Mesh Bags Research Articles

Large invertebrate decomposers contribute to faster leaf litter decomposition in Fraxinus excelsior-dominated habitats: Implications of ash dieback

Leaf litter decomposition is a major component of nutrient cycling which depends on the quality and quantity of the leaf material. Ash trees (Fraxinus excelsior, decay time ∼ 0.4 years) are declining throughout Europe due to a fungal pathogen (Hymenoscyphus fraxineus), which is likely to alter biochemical cycling across the continent. The ecological impact of losing species with fast decomposing leaves is not well quantified. In this study we examine how decomposition of three leaf species with varying decomposition rates including ash, sycamore (Acer pseudoplatanus, decay time ∼ 1.4 years), and beech (Fagus sylvatica, decay time ∼ 6.8 years) differ in habitats with and without ash as the dominant overstorey species. Ten plots (40 m × 40 m) were set up in five locations representing ash dominated and non-ash dominated habitats. In each plot mesh bags (30 cm × 30 cm, 0.5 mm aperture) with a single leaf species (5 g) were used to include (large holes added) and exclude macrofauna invertebrates (with a focus on decomposer organisms such as earthworms, millipedes, and woodlice). The mesh bags were installed in October 2020 and retrieved without replacement at exponential intervals after 6, 12, 24 and 48 weeks. Total leaf mass loss was highest in the ash dominated habitat (ash dominated: 88.5%, non-ash dominated: 66.5%) where macrofauna were the main contributor (macrofauna: 96%, microorganisms/mesofauna: 4%). The difference between macrofauna vs microorganisms and mesofauna was less pronounced in the non-ash dominated habitat (macrofauna: 68%, microorganisms/mesofauna: 31%). Our results suggest that if ash dominated habitats are replaced by species such as sycamore, beech, and oak, the role of macrofauna decomposers will be reduced and leaf litter decomposition rates will decrease by 25%. These results provide important insights for future ash dieback management decisions.

Dynamics of nitrogen mineralization and fine root decomposition in sub-tropical Shorea robusta Gaertner f. forests of Central Himalaya, India

This study aimed to examine the effects of spatial and temporal variability in edaphic, and climatic attributeson soil net nitrogen mineralization rate, and to understand the pattern of fine root decomposition of dominant and co-dominant tree species, and its influence on the nutrient cycling in forest ecosystems. Study was carried out at four different sites in sub-tropical forest ecosystems of Shorea robusta, in foothills of Central Himalayan region, India. Co-dominant tree species at four sites were Mallotus philippensis (site A), Glochidion velutinum (site B), Holarrhena pubescens (site C), and Tectona grandis (site D). Buried bag technique was used for nitrogen mineralization, while fine root decomposition was determined using fine root mesh bags. Seasonal variation, soil depth, soil characteristics, and site variability, all significantly (p < 0.05) affected nitrogen mineralization rates. Fine root decomposition was significantly affected by nutrient concentration of fine roots. Total mineral nitrogen was maximum at site D (16.24 ± 0.96 μg g−1 soil), while minimum at site C (10.10 ± 0.84 μg g−1 soil). Maximum nitrogen mineralization (13.18 ± 0.18 μg g−1 month−1) was recorded during summer season at site D, while the minimum nitrogen mineralization (3.20 ± 0.46 μg g−1 month−1) was recorded during rainy season at site C. Inorganic-N and net nitrogen mineralization was relatively higher in 0–20 cm soil layer than 20–40 cm and 40–60 cm soil layer. The fine roots showed 70.61–74.82 % weight loss on completion of 365 days of decomposition process. Maximum fine root decomposition was observed in the G. velutinum, and minimum in T. grandis. A significant positive correlation (p < 0.05) was observed between root nitrogen and carbon content, and decomposition rates per month. This study concluded that the spatial and temporal variability in soil nitrogen mineralization rates and fine root decomposition optimises nutrient cycling in forest ecosystems, which can contribute to the development of sustainable forest management practices.

Arbuscular mycorrhizal fungi suppress ammonia-oxidizing bacteria but not archaea across agricultural soils

Arbuscular mycorrhizal (AM) fungi are supposedly competing with ammonia-oxidizing microorganisms (AO) for soil nitrogen in form of ammonium. Despite a few studies directly addressing AM fungal and AO interactions, mostly in artificial cultivation substrates, it is not yet clear whether AM fungi can effectively suppress AO in field soils containing complex indigenous microbiomes. To fill this knowledge gap, we conducted compartmentalized pot experiments using four pairs of cropland and grassland soils with varying physicochemical properties. To exclude the interference of roots, a fine nylon mesh was used to separate the rhizosphere and mesh bags, with the latter being filled with unsterile field soils. Inoculation of plants with AM fungus Rhizophagus irregularis LPA9 suppressed AO bacteria (AOB) but not archaea (AOA) in the soils, indicating how soil nitrification could be suppressed by AM fungal presence/activity. In addition, in rhizosphere filled with artificial substrate, AM inoculation did suppress both AOB and AOA, implying more complex interactions between roots, AO, and AM fungi. Besides, we also observed that indigenous AM fungi contained in the field soils eventually did colonize the roots of plants behind the root barrier, and that the extent of such colonization was higher if the soil has previously been taken from cropland than from grassland. Despite this, the effect of experimental AM fungal inoculation on suppression of indigenous AOB in the unsterile field soils did not vanish. It seems that studying processes at a finer temporal scale, using larger buffer zones between rhizosphere and mesh bags, and/or detailed characterization of indigenous AM fungal and AO communities would be needed to uncover further details of the biotic interactions between the AM fungi and indigenous soil AO.

The clip cage conundrum: Assessing the interplay of confinement method and aphid genotype in fitness studies.

Behavior and fitness are important ecological traits frequently measured in insect bioassays. A common method to measure them in soft-bodied herbivorous insects involves confining individuals to plant leaves using clip cages. Although studies have previously highlighted the negative effects of clip cages on leaf physiology, little is known about the impact that using this confinement method has on insect fitness. The responses of different aphid genotypes/clones to different containment methods have not previously been investigated. Here we measured key fitness traits (intrinsic rate of natural increase, mean relative growth rate, time to reach reproductive adulthood and population doubling time) in the potato aphid, Macrosiphum euphorbiae Thomas (Hemiptera: Aphididae), when confined to plants using two methods: (1) clip cages to confine aphids to individual strawberry leaves and (2) a mesh bag to confine aphids to whole strawberry plants. Our study identified a strong negative impact on all the measured aphid fitness traits when using clip cages instead of mesh bags. We also identified genotype-specific differences in response to confinement method, where clip cage confinement differentially affected the fitness of a given aphid genotype compared to the same genotype on whole plants. These results suggest that clip cage use should be carefully considered when experiments seek to quantify insect fitness and that whole plants should be used wherever possible. Given the prevalence of clip cage use in insect bioassays, our results highlight the need for caution when interpreting the existing literature as confinement method significantly impacts aphid fitness depending on their genotype.

Pilot-scale investigation of performance and microbial community in a novel system combining fixed and suspended activated sludge

The conventional activated sludge (CAS) process is a widely used method for wastewater treatment due to its effectiveness and affordability. However, it can be prone to sludge abnormalities such as sludge bulking/foaming and sludge loss, which can lead to a decrease in treatment efficiency. To address these issues, a novel bag-based fixed activated sludge (BBFAS) system utilizing mesh bags to contain the sludge was developed for low carbon/nitrogen ratio wastewater treatment. Pilot-scale experiments demonstrated that the BBFAS system could successfully avoid the sludge abnormalities. Moreover, it was not affected by mass transfer resistance and exhibited significantly higher nitrogen removal efficiency, surpassing that of the CAS system by up to 78%. Additionally, the BBFAS system demonstrated comparable organic matter removal efficiency to CAS system. 16S rRNA gene high-throughput sequencing revealed that the bacterial community structure within the BBFAS system was significantly different from that of the CAS system. The bacteria associated with ammonium removal were more abundant in the BBFAS system than in the CAS system. The abundance of Nitrospira in the BBFAS could reach up to 6% and significantly higher than that in the CAS system, and they were likely responsible for both ammonia-oxidizing and nitrite-oxidizing functions. Clear stratification of microbial communities was observed from the outer to inner layers of the bag components due to the gradients of dissolved oxygen and other substrates. Overall, this study presents a promising approach for avoiding activated sludge abnormalities while maintaining high pollutant removal performance.

Factors affecting the decomposition of leaf litters in a mini-forest

The fallen leaves, small twigs, seeds, and other woody debris that accumulate on the ground are a natural part of the forests and make up the leaf litter. Leaf litter is an important factor in healthy soil. As it decomposes, it replenishes soil with nutrients such as nitrogen, phosphorus, and other inorganic compounds. This study aimed to identify the factors affecting the rate of the leaf litter decomposition process. The study was conducted in the mini forest and observation was conducted from August to October 2017. Data was collected weekly by observing and counting insects, and invertebrates in the leaf litter set-up which was composed of varying decaying leaf colors placed inside a mesh; the setup was separated into three colors: green, orange, and brown color and initially weighed 200 grams for each mesh bag and placed on the forest floor. The weight changes were noted every week during the visit to the field setup. This leaf litter observation concludes that various factors are affecting the process of decomposition of the leaf litter. This includes the presence of invertebrates and decomposers, the age of the leaves used in the setup, temperature, and the disturbances.

Drivers of wood decay in tropical ecosystems: Termites versus microbes along spatial, temporal and experimental precipitation gradients

Abstract Models estimating decomposition rates of dead wood across space and time are mainly based on studies carried out in temperate zones where microbes are dominant drivers of decomposition. However, most dead wood biomass is found in tropical ecosystems, where termites are also important wood consumers. Given the dependence of microbial decomposition on moisture with termite decomposition thought to be more resilient to dry conditions, the relative importance of these decomposition agents is expected to shift along gradients in precipitation that affect wood moisture. Here, we investigated the relative roles of microbes and termites in wood decomposition across precipitation gradients in space, time and with a simulated drought experiment in tropical Australia. We deployed mesh bags with non‐native pine wood blocks, allowing termite access to half the bags. Bags were collected every 6 months (end of wet and dry seasons) over a 4‐year period across five sites along a rainfall gradient (ranging from savanna to wet sclerophyll to rainforest) and within a simulated drought experiment at the wettest site. We expected microbial decomposition to proceed faster in wet conditions with greater relative influence of termites in dry conditions. Consistent with expectations, microbial‐mediated wood decomposition was slowest in dry savanna sites, dry seasons and simulated drought conditions. Wood blocks discovered by termites decomposed 16–36% faster than blocks undiscovered by termites regardless of precipitation levels. Concurrently, termites were 10 times more likely to discover wood in dry savanna compared with wet rainforest sites, compensating for slow microbial decomposition in savannas. For wood discovered by termites, seasonality and drought did not significantly affect decomposition rates. Taken together, we found that spatial and seasonal variation in precipitation is important in shaping wood decomposition rates as driven by termites and microbes, although these different gradients do not equally impact decomposition agents. As we better understand how climate change will affect precipitation regimes across the tropics, our results can improve predictions of how wood decomposition agents will shift with potential for altering carbon fluxes. Read the free Plain Language Summary for this article on the Journal blog.

Decomposition and nutrient release pattern of three potential leguminous green manure crops of Mizoram

Aim: The experiment was carried out to understand the decomposition and nutrient release dynamics (N, P and K) of Crotolaria micans Link, Aeschynomene indica L. and Calopogonium mucunoides Desv. using the litter bag technique. Methodology: The species were harvested at their peak vegetative stage and air-dried for a week. Air-dried samples (10 g) were placed in 20 cm X 20 cm nylon mesh bags and buried at 10 cm soil depth in an experimental plot of 1.5 m X 1.5 m prepared for each species. The bags were retrieved monthly, and the mass and nutrient loss were determined. Results: C. micans had the highest decay rate (7.67 k per year), followed by C. mucunoides (7.15 k per year) and A. indica (5.50 k per year). During the decomposition period, K release was the fastest. The decay rate was negatively correlated with initial lignin, total phenol and lignin/N of which the total phenol (R2 = 0.956) and lignin/N ratio (R2 = 0.832) had the most significant influence on decomposition. Interpretation: The study reveals that the species can be effectively utilized as a soil nutrient input source of which C. micans seems to be the most potential species to be further researched and developed as a green manuring crop. Key words: Decomposition, Decay rate, Green manure, Legume, Nutrient release

Effectiveness of bone-filled mesh bag technology and angle vertebroplasty in the treatment of osteoporotic thoracic vertebral compression fractures in the elderly.

To evaluate the effectiveness, pain level, and lung function in elderly patients with osteoporotic thoracic vertebral compression fractures using bone filling mesh bag technology compared to curved vertebroplasty. This retrospective analysis reviewed 72 elderly patients with osteoporotic thoracic vertebral compression fractures treated at Xindu District People's Hospital of Chengdu between February 2021 and January 2022. The patients were separated into two groups according to surgery approach: an observation group using bone filling mesh bag technology and a control group using curved vertebroplasty. The overall response rate, pain degree, pulmonary function, life quality grades, surgical indicators, and bone cement leakage rates of the two groups were evaluated. The variation in overall response rate (P=0.420), pain degree (P=0.270), pulmonary function (peak expiratory flow: P=0.660, forced expiratory volume in the first second: P=0.775, forced vital capacity: 0.062), and life quality grades (physical health: P=0.949, social function: P=0.935, physiological function: P=0.970, vitality: P=0.778) between the observation group and the control group after treatment was not statistically meaningful. The Cobb angle (P<0.001) and vertebral height (P<0.001) of patients in the observation group were significantly higher than those in the control group after therapy. The leakage rates of bone cement (intervertebral disc leakage, paravertebral vein leakage, paravertebral soft tissue leakage) of patients in the observation group were notably lower than those in the control group after therapy (P=0.029). Bone filling mesh bag technology offers significant improvements in Cobb angle and vertebral height for treating elderly patients with osteoporotic thoracic vertebral compression fractures, and reduced the leakage rate of bone cement. This technique achieves comparable therapeutic outcomes to curved vertebroplasty.

Effects of crop residue incorporation on soil‐biodegradable mulch film degradation in a broccoli‐sorghum rotation system

AbstractSoil‐biodegradable mulch films are designed to be incorporated into the soil at the end of the crop cycle, to be degraded by soil microorganisms. Despite growing scientific interest, open‐field studies about the fate of these mulch films in soils are rare, with most research conducted in laboratories. We performed an open‐field trial to evaluate the effects of soil incorporation of both a combining a commercial soil‐biodegradable mulch film and broccoli and sorghum crop residues over two cropping seasons. The mulch film was sampled after broccoli harvesting and placed inside mesh bags that were buried horizontally or vertically at different depths. Film biodegradation was assessed by direct (CO2 emissions) and indirect indicators (film mass and area loss). Three experiments were conducted to evaluate (a) how incorporating crop residues affect mulch film degradation; (b) temporal changes of soil microbial activity after the incorporation of crop residues and mulch films; and (c) possible bias in the measurement of soil CO2 emissions due to horizontal vs. vertical mesh bag orientation. Incorporation of crop residues enhanced mulch film degradation and increased the soil esterase activity. However, abundance of soil fungi and bacteria in bulk soil was not increased by mulch film presence. Mesh bag orientation did not alter the soil CO2 efflux or affect the degradation degree of mulch films. Film in mesh bags buried at 10–15 cm depth showed greater degradation than those buried at 0–5 cm. Further in‐field studies are necessary to evaluate the effects of soil incorporation of residue from different crops and impacts of other associated management practices such as various soil tillage regimes.

Benefits in plant N uptake via the mycorrhizal pathway in ample soil moisture persist under severe drought

Under global change, drought is a threat of increasing importance to plant growth and nutrition. We employed isotopic labeling on potted tomatoes (Solanum lycopersicum, cv. ‘Micro Tom’) to investigate the role of an arbuscular mycorrhizal fungus (AMF – Rhizophagus irregularis) in plant uptake of nitrogen (N) from either inorganic (15NH4Cl) or organic source (15N-labeled clover biomass) along a soil moisture gradient. 15N was provided into root-excluding mesh bags inserted in pots with mycorrhizal (M) and nonmycorrhizal (NM) plants. After labeling, a substrate moisture gradient ranging from ample moisture to the wilting point was maintained for the terminal 4 weeks.M plants acquired strikingly more 15N derived from either the inorganic or organic source than their NM counterparts. The advantage of M plants in 15N uptake was manifested across the entire moisture range, although a declining trend was observed toward the drought extreme. M plants exploited up to threefold more 15N if it was provided in the inorganic form than in the organic form, probably due to faster availability of ammonium dissolved from 15NH4Cl and adsorbed on soil particles as compared to ammonium ions derived from clover biomass via mineralization. Interestingly, NM plants received more 15N from the organic than from the inorganic source. Mycorrhiza caused a fourfold increase in N acquisition from mineral sources but only by twofold from organic sources. We speculate that this was partly caused by higher rates of N transformation of ammonium ions released by mineralization to more mobile forms (nitrification) that happened inside mesh bags with the clover biomass, and we discuss possible mechanisms responsible for such increased mobility.

Reciprocal stream–riparian fluxes: effects of distinct exposure patterns on litter decomposition

Resource fluxes at the stream–riparian interface are a vital contributor to both systems’ energy budgets. The effect of distinct litter exposure patterns—direction of the riparia–stream movement and duration of exposure at each habitat—however, remains to be elucidated. In this field experiment, oak leaves in fine and coarse mesh bags were either exposed to a stream-to-riparia or riparia-to-stream movement sequence for distinct periods (2:6, 4:4, or 6:2 weeks). After 8 weeks, ash-free mass loss, microbial activity, and fungal biomass were compared in leaves undergoing inverse movement sequences (e.g., 2-week exposure to the riparian area at the beginning vs. end of the colonization period). Mass loss in coarse mesh bags was negatively affected when leaves were previously exposed to a short (2 weeks) terrestrial pre-conditioning period, despite higher microbial activity and fungal biomass, when compared to the inverse movement. This effect on mass loss was neutralized by longer terrestrial exposures that likely allowed for a more thorough conditioning of the leaves, through extended leaching and terrestrial microbial colonization. Our results suggest that terrestrial pre-conditioning periods of < 2 weeks lead to litter-quality legacy effects in tough leaves, to which aquatic communities respond through lower substrate degradation efficiency, hindering stream decomposition. Contrastingly, oak aquatic pre-conditioning, regardless of duration, provides riparian communities with a high-quality resource, promoting litter processing through grazing behavior. As climate-induced hydrological shifts may result in altered provision/quality of detritus subsidies at the stream–riparia interface, we suggest that assessments of decomposition dynamics should consider the entire litter conditioning history.

Nutrient availability and stoichiometry mediate microbial effects on soil carbon sequestration in tropical forests

The persistence of soil organic carbon (SOC) is primarily driven by microbial metabolic activities; however, how microbial effects on SOC sequestration are affected by soil nutrient status remains unclear. Here, we conducted a one-year-long in situ soil incubation experiment using mesh bags (with a mesh size of 38 μm, allowing bacterial colonization and fungal hyphal penetration while preventing root penetration). This experiment involved incubating fertile sugarcane soil and infertile sand across an elevational gradient, characterized by diverse climatic and biotic conditions within a tropical forest. Biomarkers, such as phospholipid fatty acids, carbon-, nitrogen-, and phosphorus-acquiring hydrolases, glomalin-related proteins, and amino sugars, were measured to characterize the production and accumulation of microbial biomass, exo-enzymes, extracellular glycoproteins, and microbial necromass. These measurements aimed to elucidate their respective contribution to the sequestration of SOC. We found that Gram-negative bacteria dominated the microbial community composition in fertile soil, and the higher nutrient availability was related to the production and accumulation of microbial necromass via promoting microbial biomass turnover, thus enhancing the accumulation of SOC in fertile soil. This process was negatively associated with phosphorus availability and carbon- and phosphorus-acquiring enzyme activities in fertile soil. In contrast, the SOC accumulation was positively correlated with nitrogen availability and stoichiometry (including C:N and C:P), as well as moisture content in infertile sand. However, more resources were preferentially allocated to stress-tolerant fungi and Gram-positive bacteria under nutrient deficiency in infertile sand used for microbial biomass maintenance, nutrient acquisition, and environmental adaption which further aggravated the consumption of SOC, resulting in SOC loss after one year of field incubation. Our results suggest that microbial effects on SOC persistence are highly context-dependent and nutrient availability-induced changes in microbial communities and microbial resource-allocation strategies are key processes for understanding and predicting the fate of carbon in tropical forest soils.

The Cultivation of Scallop (Patinopecten yessoensis) in Hokkaido, Japan

Scallop culture is a widely practiced aquaculture activity in Japanese waters that involves collecting wild scallop spat and then growing the spat to a marketable size. This study aims to determine how the cultivation system, technology, and transportation are applied in scallop aquaculture in Japan. This research was conducted from December 2022 to June 2023 at a family scallop farming business in Ishikari, Hokkaido, Japan, hereafter referred to as Company X. This research utilizes a descriptive method with literature exploration and direct observation methods with a case study at Company X.Based on the literature study and activities at Company X, the cultivation media used and transportation are important parts of the scallop culture activities. The cultivation media used at Company X include onion mesh bags, Pearl nets, and lantern nets. The current transportation technology of scallops is carried out in two areas, namely sea, and land, using the open dry system transportation method, exposure method, and oxygen method. Marine transportation uses Hydraulic Cranes for Shipboard Use (Marine Cranes) technology applied to two specialized vessels of 9.7 and 12 GT with truck-mounted crane classification. Land transportation for the delivery of young scallops uses plastic container baskets covered with wet rice sacks to prevent dryness and the scallops inside the baskets from biting each other. After that, the scallops are transported by freezer truck, while land transportation for shipping adult scallops uses a freezer truck filled with oxygenated seawater. The size of the wind blowing at sea, the time of pickup - delivery, and the number of scallops needed are important factors in transportation activities.

Pollination of Richea dracophylla (Ericaceae) and the role of the nocturnal ant Notoncus hickmani (Formicinae)

AbstractOur observation of large numbers of ants Notoncus hickmani (Formicinae) on the flowers of a Tasmanian endemic shrub Richea dracophyllum (Ericacea) during the night in winter prompted us to carry out a more extensive study of pollination of R. dracophyllum at two sites. Terminal panicles bear inflorescences of 300+ flowers whose petals are fused into calyptrae covering the reproductive organs, and the calyptrae must be removed before pollination can occur. To exclude birds, we placed mesh bags over some inflorescences. Inflorescences with exclusion bags had a high proportion of retained calyptra and the numbers of viable seeds were greatly reduced. We found R. dracophyllum to have a very long flowering period (more than 6 months) and a range of floral visitors, including honey‐eaters (Meliphagidae) and flying insects. At one site we observed large numbers (up to 100) of N. hickmani on inflorescences between dusk and midnight during winter at air temperatures down to 2.5°C. They fed on nectar from flowers that had lost their calyptra where they were exposed to pollen from the anthers and scanning electron microscopy showed high numbers of pollen grains being carried on the ants. The feeding behaviour of these ants would facilitate pollination between adjacent flowers (geitonogamy). Smaller numbers of dolichoderine ants (Iridomyrmex bicknelli?) were observed during the daytime in spring but mainly fed under partially detached calyptrae where they had little exposure to pollen. We suggest that R. dracophylla is pollinated by a range of species and functional groups—birds, flying insects and ants, and that the pollinating species will vary during the year and between sites, although insects depend on birds to remove the calyptrae. Ant pollination is rare, nocturnal ant pollination is extremely rare, and pollination by nocturnal cryophilic ants has not been documented previously.

First Report of Basal Rot of Onion Caused by Fusarium oxysporum f. sp. cepae in Saudi Arabia.

Onion (Allium cepa L.) is a globally important crop worldwide including Saudi Arabia. In November 2020, 2-month-old onion plants (cv. Redwing) in commercial fields within the Sajir area of Riyadh region (∼ 1.4 ha), showed symptoms of yellowing, wilting, stunting, bulb discoloration, rot in the basal parts of bulb and decrease in roots. In the advanced stages, the affected plants collapsed and died. The incidence of symptomatic plants ranged from 30 to 65% in the surveyed fields. To isolate the pathogen, symptomatic onion plants (n =20) were sampled. Diseased tissues from roots and bulbs were cut into small pieces (4 × 4 mm), sanitized with 1% sodium hypochlorite solution for 2 min, submerged in 70% alcohol for 20 s, then rinsed with sterile water, before plating on potato dextrose agar (PDA) medium. The plates were incubated at 25°C for 6 days. Subcultures of the mycelia grown out of the diseased tissues produced purplish pink fungal colonies on PDA. On carnation leaf agar, cultures were characteristic of Fusarium oxysporum as described by Leslie and Summerell (2006), with the presence of unicellular microconidia (3.8 to 7.8 × 1.7 to 2.5 μm, n= 50) without septa in false heads or short monophialides and slightly curved macroconidia (16.3 to 28 × 4.2 to 6.1 μm, n= 50) with two to four septa. Older mycelia developed many chlamydospores that were single or in short chains. To further confirm the pathogen identification, DNA was extracted from single-spore cultures of three representative isolates using the DNeasy Plant Mini kit (QIAGEN, Hilden, Germany). Three different fungal nuclear regions of internal transcribed spacer (ITS), elongation factor 1-α, (TEF1-α) and the second largest subunit of DNA-directed RNA polymerase II (RPB2) DNA were amplified by PCR and sequenced with the following primers: ITS4 and ITS5 (White et al. 1990); EF-1 and EF-2 (O'Donnell et al. 2008); and fRPB2-5F and fRPB2-7cR (Liu et al. 1999), respectively. Phylogenetic analysis based on the alignment of the ITS, TEF1-α, and RPB2 sequences using MEGA7 placed these isolates in the F. oxysporum clade. The ITS, TEF1-α, and RPB2 sequences of an isolate FOC-OR9 were submitted to GenBank (OL721757, OL764494, and OL764495 respectively). To confirm the forma specialis cepae, a fragment of the F. oxysporum f. sp. cepae gene Secreted In Xylem 3 (SIX3) was amplified by PCR (Kalman et al. 2020). The SIX3 amplicon (∼ 277-bp) was sent for sequencing, and the sequence was submitted to GenBank (OL828265). BLASTn analysis of the sequences showed 100% identity with F. oxysporum f. sp. cepae (KP746408). To fulfill Koch's postulates, pathogenicity tests were performed with healthy onion bulbs cv. "Redwing" of 100-150 g each. Prior to inoculation of onion bulbs, the dry bulb scales, one of the fleshy inner scales, as well as the roots were removed. Bulbs were then surface sterilized (as described above) and injected with 20 µl of a conidial suspension (106 spores/ ml) into the basal plate of each bulb and approximately 1 cm deep into the tissue. Six bulbs were inoculated for each isolate, placed in a mesh bag, and incubated at 28 °C in the dark. Six bulbs injected with sterile water and six non-inoculated bulbs served as controls. At the 4th week post inoculation, necrotic rot symptoms and brown discoloration were observed on the basal plates of these inoculated bulbs (similar symptoms to those observed in the field), while control treatments showed no symptoms. The pathogen was re-isolated from the basal plates onto PDA and identified morphologically and molecularly as F. oxysporum f. sp. cepae, thus fulfilling Koch's postulates. The test was repeated twice. This pathogen was previously reported causing onion basal rot in United Kingdom (Taylor, et al., 2013). To our knowledge, this is the first report of basal rot in onion caused by F. oxysporum f. sp. cepae in Saudi Arabia. It is recommended that preventive management should be considered as this disease may cause significant economic losses for onion growers in Saudi Arabia. Also, Fusarium mycotoxin contamination of onion bulb could pose a public health risk.

Mound‐building behaviour of a keystone bioturbator alters rates of leaf litter decomposition and movement in urban reserves

AbstractBioturbation, the disturbance of soil and litter by digging animals plays an important role for a variety of species and ecological processes in many ecosystems. The majority of studies globally on the ecosystem engineering effects of digging vertebrates have focussed on mammals, with birds, reptiles and amphibians remaining comparatively understudied. The loss of ecosystem engineers is a key conservation challenge, and the return of these species is increasingly seen as a priority for habitat restoration; yet this concept is highly novel when we consider urban ecosystems. The Australian brush‐turkey (Alectura lathami), historically a rainforest bird and now common in urban ecosystems, displaces significant quantities of soil and leaf litter through its foraging and nest‐building behaviour and has previously been described as an ecosystem engineer. Here, we tested the effect of brush‐turkey nest building on the decomposition rate of leaf litter, an important ecosystem process. We placed mesh bags of dried Angophora costata and Lantana camara leaves at increasing distances from brush‐turkey incubation mounds. We predicted that leaf litter closer to the nest would break down faster during the brush‐turkey breeding season due to increased turnover associated with nest mound maintenance. We found slower leaf litter decomposition in the breeding than the non‐breeding season, but a relatively greater rate of decomposition closer to the mound in the breeding season. Our results show a seasonal difference in the spatial pattern of leaf litter decomposition and movement; we interpret that brush‐turkey mound‐building behaviour was the key driver. The ecosystem services provided by brush‐turkeys are of particular interest for future research as this species is naturally recolonizing areas where it has been absent for decades, including urban areas. The effect of this species on ecosystem processes including nutrient cycling, seedbank stimulation and reduced fuel loads warrants further investigation.

The weaving art of mechanically and electronically robust hydrogel realizes multi-dimensional response of stretchable sensors

In recent years, hydrogel-based soft electronics have been developed for the application of human motion, flexible robots and foldable displays. However, most existing conductive hydrogels have low toughness, single electron conduction or ionic conduction and poor adaptability towards complex applications. In this work, we obtained the toughness fiber-like hydrogel in three steps by doping nanofillers, directional extrusion freezing, and salting out. The proposed tough fiber-like hydrogel has a rich porous structure, which is achieved by doping the hydrophilic graphene nanosheets (HGNs) into a physically cross-linking polyvinyl alcohol (PVA) gel matrix. Directional extrusion freezing and salting out effect endow fiber-like hydrogel with better orientation ultimate nominal stress (∼9.5 MPa) and nominal strain (∼2200%). Meanwhile, the abundant porous structure facilitates ion migration and greatly enhances the ionic conductivity (up to 2.8 S m −1, at f = 1 MHz) of the hydrogel. The presence of HGNs endows the fiber-like hydrogel with excellent electronic conduction properties. Moreover, the weaving strategy is proposed to fabricate fiber-like hydrogel into hydrogel fabric film, which is effective for increased safety of stress-induced deformation and crack propagation. The woven hydrogel mesh bag can lift 6 kg of watermelon and the woven hydrogel net can bear a top-down weight impact of 1 kg. We also develop a novel type of woven hydrogel glove that can monitor complex hand movement. This work will provide new insight into the design of multifunctional materials with applications on electronic skin, wearable devices, and health monitoring.

What dead seaweeds can tell us about metal uptake and their application to control marine pollution

The mechanisms of trace element uptake by seaweeds are still unknown, despite being key to understand the impact of pollution in coastal environments. This knowledge gap, in addition to the lack of standardization, have also hindered the use of seaweeds to monitor seawater pollution. To address these shortcomings, we tested the use of devitalization as a pre-exposure treatment for brown seaweed transplants, and we compared devitalized and fresh transplants to gain some insights into the mechanisms of element uptake. We exposed four types of Fucus vesiculosus transplants in 6 sites for 4, 8 and 20 days: fresh and devitalized (dried or boiled) algal segments held in mesh bags, and whole algal thalli imitating natural conditions. We then determined he concentrations of 11 trace elements in the algal tissues. The element concentrations were highest in the devitalized transplants, but the material lost consistency and weight throughout the exposure period, limiting their use to short periods. We proposed several factors that may contribute to the different accumulation patterns between treatments, and examined the implications for the uptake mechanisms, revealing that two of the most important are surface adsorption of sediment particles and chemical bounds to extracellular components.

Deep Straw Burial Accelerates Straw Decomposition and Improves Soil Water Repellency

The continuous input, slow decomposition, and retention of straw can impede tillage and crop growth, and the decomposition process of the straw in soil is affected by its composition and the method of application. Experimental Station of Jilin Agricultural University, Changchun City, Jilin Province. The soil type was Argiudolls, the experimental field area was 30 m2, and the maize was planted continuously for 12 years without returning the straw to the field. There were four treatments: (1) control (CK), 10 g of straw was placed on the surface of a nylon mesh bag, and the nylon mesh bag was separated from the soil by polyethylene film without contacting with the soil; (2) straw mulching (CM), a nylon mesh bag with 10 g of straw was placed on the soil surface; (3) straw burying (CD), a nylon mesh bag with 10 g of straw was buried at a depth of 40 cm from the soil surface; (4) straw burying (CE), a nylon mesh bag with 40 cm of soil depth. Fifteen micro-zones were set up with a micro-zone area of 1 m2 and each micro-zone consisted of four treatments randomly grouped in three replicates per treatment. The on-site nylon bag burying trial started on 20 April 2021 and ended on 15 April 2022. Nylon bag and soil samples were collected on days 0, 30, 90, 180, 270, and 360. SOC, TN, straw component decomposition, and water droplet-soil contact angle were determined. Our results showed that the CE treatment increased soil organic carbon (SOC) and total nitrogen (TN) content compared to the CM and CD treatments. Compared with CK, straw decomposition rates increased by 13.3%, 30.8%, and 22.3% in the CM, CD, and CE treatments, respectively. Lignin decomposition rates increased by 7.8%, 27.3%, and 16.2%; cellulose decomposition rates increased by 14.6%, 35.4%, and 27.3%; and hemicellulose decomposition rates increased by 17.2%, 31.7% and 23.7% in the CD treatment, respectively. Compared with CK, the contact angle of droplets in the CD treatment was statistically significantly increased by 91.5% when the droplets remained on the soil surface for 5 s. The rate of decrease of droplet contact angle with time was statistically significantly decreased by 11.8%, and the penetration rate of droplets on the soil surface was slower. Overall, the CD treatment promoted straw decomposition and increased SWR compared to the CM and CE treatments. which are important attributes to enhance soil quality and improve soil structural stability.