Quantification mercury (Hg) pools in forests is crucial for understanding the Hg assimilation, flux and even biogeochemical cycle in forest ecosystems. While several investigations focused on Hg pools among broad-leaved, coniferous and mixed forests, there was still absent information on alpine forest. We sampled soil, moss and various tissues of the dominant Qinghai spruce (Picea crassifolia Kom.) to investigate Hg concentrations and pools, and assess Hg accumulation dynamics in the Qilian Mountains, northwestern China. The mean Hg concentration increased in the following order: trunk wood (1.8 ± 0.7 ng g−1) < branch (4.6 ± 0.8 ng g−1) < root (12.2 ± 2.9 ng g−1) < needle (19.3 ± 5.6 ng g−1) < bark (28.7 ± 9.0 ng g−1) < soil (34.1 ± 7.7 ng g−1) < litterfall (42.9 ± 2.9 ng g−1) < moss (62.5 ± 5.0 ng g−1). The soil contained Hg pools two orders of magnitude higher than vegetation and accounted for 92.2 % of the total Hg pool in the alpine forest ecosystem. Moss, despite representing only 2.7 % of total vegetation biomass, contained a disproportionate 16.7 % of the Hg pool. Although species-specific, aboveground spruce tissues exhibited higher Hg pools in alpine forests compared to other forests in China and America. The dynamic accumulation indicated that increasing atmospheric Hg concentration and enhancing tree productivity contributed to rising Hg assimilation in remote alpine forests, particularly after the 1960s. Our results highlight the relatively high levels of Hg pools in aboveground tree tissues of alpine forest and reveal a significant increase in Hg accumulation. We recommend that when assessing Hg dynamics in forest ecosystems, it is crucial to consider both the variability in atmospheric Hg exposure levels and the forest productivity.