The BeiDou global navigation satellite system (BDS-3) has been widely applied in various geodetic applications since its full operation. However, the estimated station coordinates using BDS-3 are less precise compared to GPS results. It contains systematic errors caused by scale bias with respect to International GNSS Service (IGS) 2020 frame and Inter-System Translation Parameters (ISTPs). In order to improve the consistency of BDS-3-derived station coordinates with respect to IGS20 products, we firstly estimated the satellite antenna Phase Center Offsets (PCOs) for BDS-3 Medium Earth Orbit (MEO) constellation, and then estimated station-specific ISTPs from GPS to BDS-3 systems. The results indicate that the PCO-Z estimates show large differences among satellites from different manufacturers and orbit planes. The estimated BDS-3 satellite PCOs exhibit a systematic bias of −9.3 cm in the Z-direction compared to ground calibrations. The maximum mean station-specific ISTPs can reach up to 3 mm, highlighting significant variability and the need for refinement in positioning. When using the estimated PCOs instead of igs20.atx values, the estimated scale bias with respect to the IGS20 frame is reduced from 0.38 ppb to −0.12 ppb, indicating that the refined BDS-3 satellite PCOs are well compatible with IGS20. Regarding the Up component that is correlated with the scale factor, the station coordinate differences with respect to the IGS20 frame is reduced from 7.0 mm to 6.2 mm in terms of the root mean square (RMS), which is improved by 11.4%. Considering the additional ISTP corrections, a further improvement of 17% was obtained in station coordinates. The RMS of station coordinate differences with respect to the IGS20 frame is 2.3 mm, 2.7 mm, and 5.2 mm for the North, East, and Up components, respectively.
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