Abstract Background and Aims Dialysis patients often have comorbidities that result in frequent hospitalizations. Several studies showed that inpatient costs contributed largely to the medical costs of dialysis patients. In this study, to assess the impact of comorbidities on inpatient costs in dialysis patients, we examined the association between reasons for admission and the inpatient costs using electronic medical records. Method This was a single-center, retrospective, observational study of dialysis patients admitted to Yokohama General Hospital (300 beds) between April 2020 and March 2022. Information on patient demographics, cause of end-stage kidney disease (ESKD), dialysis duration, number of complications, and reasons for admission were collected from electronic medical records. Inpatient costs were calculated from claims data and analyzed based on patient characteristics and reasons for admission. Inpatient costs for dialysis patients were compared with those for all hospitalized patients. Data were analyzed using the Kruskal-Wallis test. Results During the observation period, 172160 patients were admitted to the hospital, of which 169 were maintenance dialysis patients. One hundred and twenty-three of them were male, with a mean age of 73.0 years. Diabetic kidney disease was the most common cause of ESKD (n=128), followed by chronic glomerulonephritis (n=21), nephrosclerosis (n=19), and autosomal polycystic kidney disease (n=1). The median time on dialysis was 5 years. Seventy-three patients were admitted for peripheral vascular disease, 24 for cardiovascular disease, 24 for fractures, 16 for gastrointestinal disease, 13 for cerebrovascular disease, and remainder for other conditions. Inpatient costs ranged from €764 to €79743, with a mean of €14884, and a median of €9002. Inpatient costs did not differ significantly by age, sex, time on dialysis, number of complications, or cause of ESKD. There were significant differences in inpatient costs according to the reason for admission. Patients hospitalized for cerebrovascular disease had significantly higher inpatient costs with a mean of €17733 and a median of €14623 (P = .049). During the study period, dialysis patients accounted for 0.098% of all inpatient admissions, and their medical costs were 3% of the hospital's total inpatient medical costs. Conclusion Considering the number of dialysis patients as a percentage of all inpatients during the study period, it was clear that dialysis patients had a high cost burden. Among dialysis patients, hospitalization for cerebrovascular disease was associated with significantly higher costs.