Stress Tolerance Mechanisms Research Articles

Cyclic guanosine monophosphate improves salt tolerance in Solanum lycopersicum

The cyclic nucleotide cyclic guanosine monophosphate (cGMP) is a powerful cell signaling molecule involved in biotic and abiotic stress perception and signal transduction. In the model plant Arabidopsis thaliana, salt and osmotic stress rapidly induce increase in cGMP which plays role by modulating the activity of monovalent cation transporters, possibly by direct binding to these proteins and by altering the expression of many abiotic stress responsive genes. In a recent study, a membrane permeable analogue of cGMP (8-bromo-cGMP) was found to have a promotive effect on soluble sugar, flavonoids and lignin content, and membrane integrity in Solanum lycopersicum seedlings under salt stress. However, it remains to be elucidated how salt stress affects the endogenous cGMP level in S. lycopersicum and if Br-cGMP-induced improvement in salt tolerance in S. lycopersicum involves altered cation fluxes. The current study was conducted to answer these questions. A rapid increase (within 30 s) in endogenous cGMP level was determined in S. lycopersicum roots after treatment with 100 mM NaCl. Addition of membrane permeable Br-cGMP in growth medium remarkably ameliorated the inhibitory effects of NaCl on seedlings’ growth parameters, chlorophyll content and net photosynthesis rate. In salt stressed plants, Br-cGMP significantly decreased Na+ content by reducing its influx and increasing efflux while it improved plants K+ content by reducing its efflux and enhancing influx. Furthermore, supplementation with Br-cGMP improved plant’s proline content and total antioxidant capacity, resulting in markedly decreased electrolyte leakage under salt stress. Br-cGMP increased the expression of Na+/H+ antiporter genes in roots and shoots of S. lycopersicum growing under salt stress, potentially enhancing plant’s ability to sequester Na+ into the vacuole. The findings of this study provide insights into the mechanism of cGMP-induced salt stress tolerance in S. lycopersicum.

Water stress memory in wheat/maize intercropping regulated photosynthetic and antioxidative responses under rainfed conditions

Drought is a most prevalent environmental stress affecting the productivity of rainfed wheat and maize in the semiarid Loess Plateau of China. Sustainable agricultural practices such as intercropping are important for enhancing crop performance in terms of better physiological and biochemical characteristics under drought conditions. Enzymatic and non-enzymatic antioxidant enzyme activities are associated with improved abiotic tolerance in crop plants, however, its molecular mechanism remains obscure. A 2-year field study was conducted to evaluate the influence of intercropping treatment viz. wheat mono-crop (WMC), maize mono-crop (MMC), intercropping maize (IM) and wheat (IW) crops, and nitrogen (N) application rates viz. control and full-dose of N (basal application at 150 and 235 kg ha−1 for wheat and maize, respectively) on chlorophyll fluorescence, gas exchange traits, lipid peroxidation, antioxidative properties and expression patterns of six tolerance genes in both crops under rainfed conditions. As compared with their respective monocropping treatments, IW and IM increased the Fo/Fm by 18.35 and 14.33%, PS-11 efficiency by 7.90 and 13.44%, photosynthesis by 14.31 and 23.97%, C-capacity by 32.05 and 12.92%, and stomatal conductance by 41.40 and 89.95% under without- and with-N application, respectively. The reductions in instantaneous- and intrinsic-water use efficiency and MDA content in the range of 8.76–26.30% were recorded for IW and IM treatments compared with WMC and MMC, respectively. Compared with the WMC and MMC, IW and IM also triggered better antioxidant activities under both N rates. Moreover, we also noted that intercropping and N addition regulated the transcript levels of six genes encoding non-enzymatic antioxidants cycle enzymes. The better performance of intercropping treatments i.e., IW and IM were also associated with improved osmolytes accumulation under rainfed conditions. As compared with control, N addition significantly improved the chlorophyll fluorescence, gas exchange traits, lipid peroxidation, and antioxidant enzyme activities under all intercropping treatments. Our results increase our understanding of the physiological, biochemical, and molecular mechanisms of intercropping-induced water stress tolerance in wheat and maize crops.

MiR397-LACs mediated cadmium stress tolerance in Arabidopsis thaliana.

Cadmium (Cd) is a non-essential heavy metal, assimilated in plant tissue with other nutrients, disturbing the ions' homeostasis in plants. The plant develops different mechanisms to tolerate the hazardous environmental effects of Cd. Recently studies found different miRNAs that are involved in Cd stress. In the current study, miR397 mutant lines were constructed to explore the molecular mechanisms of miR397 underlying Cd tolerance. Compared with the genetically modified line of overexpressed miR397 (artificial miR397, amiR397), the lines of downregulated miR397 (Short Tandem Target Mimic miR397, STTM miR397) showed more substantial Cd tolerance with higher chlorophyll a & b, carotenoid and lignin content. ICP-OES revealed higher cell wall Cd and low total Cd levels in STTM miR397 than in the wild-type and amiR397 plants.Further, the STTM plants produced fewer reactive oxygen species (ROS) and lower activity of antioxidants enzymes (e.g., catalase [CAT], malondialdehyde [MDA]) compared with amiR397 and wild-type plants after stress, indicating that silencing the expression of miR397 can reduce oxidative damage. In addition, the different family transporters' gene expression was much higher in the amiR397 plants than in the wild type and STTM miRNA397. Our results suggest that miR397 plays a role in Cd tolerance in Arabidopsis thaliana. Overexpression of miR397 could decrease Cd tolerance in plants by regulating the expression of LAC 2/4/17, changing the lignin content, which may play an important role in inducing different stress-tolerant mechanisms and protecting the cell from a hazardous condition. This study provides a basis to elucidate the functions of miR397 and the Cd stress tolerance mechanism in Arabidopsis thaliana.

Salt Stress Tolerance in Medicinal and Aromatic Plants: A Review

Soil salinity is a globally pervasive issue, significantly affecting crop productivity and quality. This review provides a comprehensive overview of salt stress tolerance in medicinal and aromatic plants, plants known for their unique metabolic capabilities and resilience to abiotic stress. The adverse impact of salt stress on plant development, growth, and chemical composition is examined, emphasizing the specific effects on medicinal and aromatic plants, such as reduced biomass, altered yield, and modification of chemical composition. We delve into the complex responses exhibited by plants under salt stress, including physiological, biochemical, and molecular mechanisms. Physiological responses such as osmotic adjustment and ion homeostasis, biochemical responses including antioxidant production and compatible solute synthesis, and molecular responses like the upregulation of salt stress-responsive genes and hormone modulation, all contribute to salt stress tolerance. Understanding these intricate mechanisms offers valuable insights into the plants' resilience under salt stress. This review also discusses strategies to enhance salt stress tolerance in medicinal and aromatic plants, encompassing breeding and genetic modification, management strategies, and the utilization of beneficial soil microbes. The potential of selective breeding and genetic engineering in developing salt-tolerant plants is explored, along with the implementation of efficient irrigation systems and the use of salt-tolerant rootstocks. Additionally, the potential role of beneficial soil microbes such as mycorrhizal fungi and plant growth-promoting rhizobacteria in alleviating salt stress is highlighted. Lastly, we present potential future directions and applications for this research. The findings and strategies elaborated upon in this review have far-reaching implications, including the improvement of salt stress tolerance in other crops, promoting sustainable agriculture in saline soils, and potential therapeutic implications due to altered biochemical composition under salt stress. The continuation of research in this field is critical to tackling soil salinity challenges and maximizing the medicinal and aromatic plants' potential under salt stress. This review underscores the importance of studying salt stress tolerance mechanisms in medicinal and aromatic plants to contribute to sustainable agricultural practices and the advancement of the pharmaceutical industry.

Identification and expression of cysteine sulfite decarboxylase genes and their response to hyposalinity stress in Ruditapes philippinarum

Cysteine sulfinate decarboxylase (CSAD) is a rate-limiting enzyme in taurine biosynthesis. In this study, the structure and expression characteristics of the RpCSAD gene in Ruditapes philippinarum were analyzed. The pyridoxal phosphate (PLP)-dependent amino acid carboxylase structural domains and catalytic active sites of six copies of RpCSAD were highly conserved. Tissue expression analysis demonstrated that RpCSAD1 and RpCSAD3-6 was primarily expressed in the mantle tissue, and RpCSAD2 in the water tube and gonad tissue. After exposure to hyposalinity stress, the expression levels of RpCSADs were found to be upregulated in all three shell-colored groups of clams. Remarkably, there was a pronounced increase in the expression of RpCSAD1-6 observed specifically in the zebra shell-color groups. These findings strongly suggest the involvement of taurine metabolism in the response of zebra shell-color clams to low salinity stress, thereby emphasizing its critical role in the adaptation mechanisms. These findings could contribute to a better understanding the mechanisms of osmotic stress tolerance in shellfish.

Ecophysiological responses of Glycine max L. under single and combined cadmium and salinity stresses.

Soil contamination by cadmium (Cd) and degradation by salinity are likely to become one of the most important problems hindering food production and human health. However, their combined effect on crops is still ambiguous. A hydroponic study was made to investigate the separate and combined exposure of 100 µM Cd and 150 µM NaCl on soybeans (Glycine max L.) growth, photosynthetic pigment, and antioxidant systems for 7 days. Both Cd and NaCl, applied separately decreased the seedlings growth, chlorophyll contents and caused oxidative stress. However, the toxic effects of salinity applied alone were more pronounced. Interestingly, combined exposure of Cd and NaCl induced higher decreases in all growth parameters and lipid peroxidation than single exposure suggesting synergistic effects. The results implicate that the phytotoxicity of both stressors can be associated with redox status imbalance. Our finding may provide insight into the physiological mechanisms of heavy metal exposure and salinity stress tolerance in soybeans and suggest that saline stress changes the effects of Cd toxicity on crops in Cd-salt-polluted soils.

Linking the role of melatonin in plant stress acclimatization

Melatonin is a derivative of tryptophan and consists of a conserved domain present ubiquitously from bacteria to higher organisms. Melatonin is an emerging pleiotropic plant growth hormone that is pivotal in coping with various biotic and abiotic stress conditions. It regulates downstream signaling transduction that modulates plants' physiological and biochemical pathways. Melatonin can be externally applied and could strengthen the stress tolerance mechanism of plants by enhancing ROS-scavenging enzymatic and non-enzymatic antioxidant defense systems. Which consequently exhibits lower lipid peroxidation, MDA content, greater enzyme activity, metabolic pool, ion homeostasis, and plasma membrane integrity under stress conditions. In addition, melatonin protects photosynthetic machinery by maintaining cell membrane stability and chlorophyll recovery. It also stimulates the electron transport chain during photosynthesis and D1 protein biosynthesis and maximizes the photochemistry efficiency (Fv/Fm) of photosystem II and photochemical quenching. Besides abiotic stress, melatonin plays a significant role in biotic stress tolerance. This review emphasizes Melatonin as a stress protectant under biotic and abiotic stress. Further, we have highlighted integrating advanced biotechnology tools with recent information for the possible application of melatonin in the current scenario of changing climate.

Na+ and K+ homeostasis in different organs of contrasting Zoysia japonica accessions under salt stress

Zoysia japonica Steud., a typical halophyte, can secrete salt through salt glands, which is an important salt stress tolerance mechanism. However, the Na+ and K+ homeostasis in different organs under salt stress has not been reported. In this study, two salt-tolerant (Z011 and Z015) and two salt-sensitive (Z004 and Z103) Zoysia japonica accessions were investigated. We analyzed their Na+ and K+ absorption, transport, distribution and secretion in different organs under salt stress. Under 200 mM NaCl treatment, the Na+ content in the roots of the salt-tolerant accessions was significantly lower but K+ levels and K+/Na+ ratio were both prominently higher than those in the salt-sensitive accessions. Na+ and K+ flux assays in different root zones suggested that, under salt stress, Na+ efflux in the root maturation zone of the salt-tolerant accessions increased significantly compared with the control. The K+ efflux in the root maturation zone of the salt-sensitive accessions showed a prominent increase, but no significant differences were seen in the root meristematic or elongation zones, implying that the root maturation zone is the crucial salt tolerance regulation area of Zoysia japonica for Na+ and K+ absorption and efflux. Studies on cross-sectional tissues of different organs indicated that the roots of the salt-tolerant accessions had a stronger compartmentalization ability aiming to inhibit the entry of Na+ into the stele and prevent the loss of K+ than those of the salt-sensitive accessions. Furthermore, the salt-tolerant accessions could secrete more Na+ and K+ through the salt glands of leaves, while Na+ secretion was much more than K+ under salt stress. Therefore, the efflux and compartmentalization of ions by roots, selective transport of ions by stolons and ion secretion by leaves coordinately regulate the Na+ and K+ homeostasis of Zoysia japonica under salt stress.

Pokkali: A Naturally Evolved Salt-Tolerant Rice Shows a Distinguished Set of lncRNAs Possibly Contributing to the Tolerant Phenotype.

Pokkali is a strong representation of how stress-tolerant genotypes have evolved due to natural selection pressure. Numerous omics-based investigations have indicated different categories of stress-related genes and proteins, possibly contributing to salinity tolerance in this wild rice. However, a comprehensive study towards understanding the role of long-noncoding RNAs (lncRNAs) in the salinity response of Pokkali has not been done to date. We have identified salt-responsive lncRNAs from contrasting rice genotypes IR64 and Pokkali. A total of 63 and 81 salinity-responsive lncRNAs were differentially expressed in IR64 and Pokkali, respectively. Molecular characterization of lncRNAs and lncRNA-miRNA-mRNA interaction networks helps to explore the role of lncRNAs in the stress response. Functional annotation revealed that identified lncRNAs modulate various cellular processes, including transcriptional regulation, ion homeostasis, and secondary metabolite production. Additionally, lncRNAs were predicted to bind stress-responsive transcription factors, namely ERF, DOF, and WRKY. In addition to salinity, expression profiling was also performed under other abiotic stresses and phytohormone treatments. A positive modulation in TCONS_00035411, TCONS_00059828, and TCONS_00096512 under both abiotic stress and phytohormone treatments could be considered as being of potential interest for the further functional characterization of IncRNA. Thus, extensive analysis of lncRNAs under various treatments helps to delineate stress tolerance mechanisms and possible cross-talk.

Salicylic acid metabolism and signalling coordinate senescence initiation in aspen in nature

Deciduous trees exhibit a spectacular phenomenon of autumn senescence driven by the seasonality of their growth environment, yet there is no consensus which external or internal cues trigger it. Senescence starts at different times in European aspen (Populus tremula L.) genotypes grown in same location. By integrating omics studies, we demonstrate that aspen genotypes utilize similar transcriptional cascades and metabolic cues to initiate senescence, but at different times during autumn. The timing of autumn senescence initiation appeared to be controlled by two consecutive “switches”; 1) first the environmental variation induced the rewiring of the transcriptional network, stress signalling pathways and metabolic perturbations and 2) the start of senescence process was defined by the ability of the genotype to activate and sustain stress tolerance mechanisms mediated by salicylic acid. We propose that salicylic acid represses the onset of leaf senescence in stressful natural conditions, rather than promoting it as often observed in annual plants.

The Role of Anthocyanins in Plant Tolerance to Drought and Salt Stresses.

Drought and salinity affect various biochemical and physiological processes in plants, inhibit plant growth, and significantly reduce productivity. The anthocyanin biosynthesis system represents one of the plant stress-tolerance mechanisms, activated by surplus reactive oxygen species. Anthocyanins act as ROS scavengers, protecting plants from oxidative damage and enhancing their sustainability. In this review, we focus on molecular and biochemical mechanisms underlying the role of anthocyanins in acquired tolerance to drought and salt stresses. Also, we discuss the role of abscisic acid and the abscisic-acid-miRNA156 regulatory node in the regulation of drought-induced anthocyanin production. Additionally, we summarise the available knowledge on transcription factors involved in anthocyanin biosynthesis and development of salt and drought tolerance. Finally, we discuss recent progress in the application of modern gene manipulation technologies in the development of anthocyanin-enriched plants with enhanced tolerance to drought and salt stresses.

Overexpression of 2-Cys Peroxiredoxin alleviates the NaHCO3 stress-induced photoinhibition and reactive oxygen species damage of tobacco

Plant 2-cysteine peroxiredoxin (2-Cys Prx) is a mercaptan peroxidase localized in chloroplasts and has unique catalytic properties. To explore the salt stress tolerance mechanisms of 2-Cys Prx in plants, we analyzed the effects of overexpressing the 2-CysPrx gene on the physiological and biochemical metabolic processes of tobacco under NaHCO3 stress through joint physiological and transcriptomic analysis. These parameters included growth phenotype, chlorophyll, photosynthesis, and antioxidant system. After NaHCO3 stress treatment, a total of 5360 differentially expressed genes (DEGs) were identified in 2-Cysprx overexpressed (OE) plants, and the number of DEGs was significantly lower than 14558 in wild-type (WT) plants. KEGG enrichment analysis showed that DEGs were mainly enriched in photosynthetic pathways, photosynthetic antenna proteins, and porphyrin and chlorophyll metabolism. Overexpressing 2-CysPrx significantly reduced the growth inhibition of tobacco induced by NaHCO3 stress, alleviating the down-regulation of the DEGs related to chlorophyll synthesis, photosynthetic electron transport and the Calvin cycle and the up-regulation of those related to chlorophyll degradation. In addition, it also interacted with other redox systems such as thioredoxins (Trxs) and the NADPH-dependent Trx reductase C (NTRC), and mediated the positive regulation of the activities of antioxidant enzymes such as peroxidase (POD) and catalase (CAT) and the expression of related genes, thereby reducing the accumulation of superoxide anion (O2·-), hydrogen peroxide (H2O2) and malondialdehyde (MDA). In conclusion, 2-CysPrx overexpression could alleviate the NaHCO3 stress-induced photoinhibition and oxidative damage by regulating chlorophyll metabolism, promoting photosynthesis and participating in the regulation of antioxidant enzymes, and thus improve the ability of plants to resist salt stress damage.

Analysis of physiological and proteomic changes in marigold (Calendula officinalis) in response to short term cold stress

C. officinalis, pot marigold, is an important plant growing in China, Europe and USA which can withstand harsh winters in Kashmir Himalayan region in India. We investigated the cold stress tolerance mechanism in Calendula officinalis by assessing various physiological dimensions and two dimensional (2D) proteomic analysis on exposure to 4 °C at different time intervals. Seeds of C. officinalis were grown at 25 °C for two weeks, transferred to growth chamber set at 4 °C and tissues were analyzed every after 24 h for one week for physiological and proteomic alterations. Differentially expressed proteins were subjected to MALDI-TOF-MS analysis. The plant shows an increased dry weight with an increased relative water content maintaining the cell turgidity and photosynthetic activity during cold stress. The enhancement of ascorbate-glutathione pathway and accumulation of various non-enzymatic antioxidants (AsA, GSH and GSSG) protects the plant against the oxidative damage during cold stress. Total of 24 proteins spots exhibit significant changes at least after 24 h cold stress. The up-regulated proteins in response to cold stress belonged to photosynthesis, respiration, stress resistance, fatty acid metabolism, antioxidant defense, plant development and signal transduction. Three proteins corresponding to spot 90, 136 and 356 were found to be unique which may play a crucial role in cold tolerance mechanism in C. officinalis. Besides, some cold responsive proteins identified in C. officinalis are also involved in salt, heavy metal and abiotic stress response, which strongly suggest their cross-tolerance to biotic and abiotic stress. The transcript expression of some selected cold responsive proteins demonstrates a correlation with the proteomic data, which suggests that the proteomic data is reliable and can be used for further studies. Furthermore, this is the first report of proteomic study on C. officinalis in response to cold stress that opens novel insights in understanding the mechanism of cold tolerance in ornamental plants, which are important source of gene pool for plant breeding initiatives leading to the development of cold resilient commercial crops.

CONTROL OF K+HOMEOSTASIS: AN ESSENTIAL STRESS TOLERANCE MECHANISM IN PLANTS

Soil salinity is one of the most critical environmental stressors that reduces crop yields worldwide and affects wild plants distribution in nature. Climate change is increasing the salinity of irrigated cropland and natural saline habitats of high ecological value, highlighting the interest in elucidating salt stress tolerance mechanisms in crops and wild plants. One of the well-known adverse effects of salt is the interference of toxic Na+ ions with K+ uptake and homeostasis, as both cations compete for the same binding sites and transport proteins. Therefore, an increase in substrate salinity is usually accompanied by a reduction of K+ concentrations in the plant organs, as it has been observed in many species, both salt sensitive and tolerant. However, in other plants, K+ contents are maintained or even increase with increasing Na+ concentrations; for example, in some species, K+transport to the leaves is activated at high external salinity to counteract the toxic Na+ effects. This review will present several examples of these mechanisms and their relevance for stress tolerance, based primarily on our group's work during the last 20 years.

Extraction Potential of Lolium perenne L. (Perennial Rye Grass) for Metals in Landfill Soil: Its Tolerance and Defense Strategies

Landfill sites open and close frequently throughout the world, taking over a significant amount of land and leaving it contaminated and unavailable to the surrounding population for use. Different forms of remediation methods have been employed to rehabilitate contaminated land to a state that poses less of a threat to the environment. Phytoremediation is one of the remediation techniques that has proven to be effective, economical and easier to implement compared to other methods. The main aim of this study was to explore the potential use of Lolium perenne L. to remediate and restore metal-contaminated landfill soil and determine its stress tolerance mechanism(s). The metal uptake, determined using inductively coupled plasma-optical emission spectroscopy (ICP-OES) and inductively coupled plasma-mass spectroscopy (ICP-MS), revealed that Lolium perenne accumulate a higher amount of metals in the roots than in leaves, which was further confirmed by the translocation factor (TF) values of all of the metals that were below 1, ranging between 0.2 and 0.8, while Cu, Cr and Pb had a bioaccumulation factor (BCF) > 1. This confirms that L. perenne is capable of absorbing metals into the root matrix but might restrict further movement into other parts of the plant as a defense mechanism against metal toxicity. In response to metal-induced stress, L. perenne displayed an increase in enzyme activity of superoxide dismutase, glutathione S-transferase, peroxidase and amylases in plants grown in landfill soil. Peroxidases displayed the highest level of enzyme activity, while total amylolytic activity had the most significant increase in activity over time. Although not a hyperaccumulator, L. perenne is a potential candidate for the phytoremediation of landfill soil and the phytostabilization of Cu, Cr and Pb.

Deciphering the complex cotton genome for improving fiber traits and abiotic stress resilience in sustainable agriculture.

Understanding the complex cotton genome is of paramount importance in devising a strategy for sustainable agriculture. Cotton is probably the most economically important cash crop known for its cellulose-rich fiber content. The cotton genome has become an ideal model for deciphering polyploidization due to its polyploidy, setting it apart from other major crops. However, the main challenge in understanding the functional and regulatory functions of many genes in cotton is still the complex cotton polyploidy genome, which is not limited to a single role. Cotton production is vulnerable to the sensitive effects of climate change, which can alter or aggravate soil, pests, and diseases. Thus, conventional plant breeding coupled with advanced technologies has led to substantial progress being made in cotton production. In the frontier areas of genomics research, cotton genomics has gained momentum accomplished by robust high-throughput sequencing platforms combined with novel computational tools to make the cotton genome more tractable. Advances in long-read sequencing have allowed for the generation of the complete set of cotton gene transcripts giving incisive scientific knowledge in cotton improvement. In contrast, the integration of the latest sequencing platforms has been used to generate multiple high-quality reference genomes in diploid and tetraploid cotton. While pan-genome and 3D genomic studies are still in the early stages in cotton, it is anticipated that rapid advances in sequencing, assembly algorithms, and analysis pipelines will have a greater impact on advanced cotton research. This review article briefly compiles substantial contributions in different areas of the cotton genome, which include genome sequencing, genes, and their molecular regulatory networks in fiber development and stress tolerance mechanism. This will greatly help us in understanding the robust genomic organization which in turn will help unearth candidate genes for functionally important agronomic traits.

Photosynthetic efficiency and transcriptome analysis of Dunaliella salina under hypersaline: a retrograde signaling mechanism in the chloroplast.

Understanding the molecular mechanisms of environmental salinity stress tolerance and acclimation strategies by photosynthetic organisms facilitates accelerating the genetic improvement of tolerant economically important crops. In this study, we have chosen the marine algae Dunaliella (D.) salina, a high-potential and unique organism that shows superior tolerance against abiotic stresses, especially hypersaline conditions. We have grown the cells in three different salt concentrations 1.5M NaCl (control), 2M NaCl, and 3M NaCl (hypersaline). Fast chlorophyll fluorescence analysis showed increased initial fluorescence (Fo) and decreased photosynthetic efficiency, indicating hampered photosystem II utilization capacity under hypersaline conditions. Also, the reactive oxygen species (ROS) localization studies and quantification revealed elevated accumulation of ROS was observed in the chloroplast in the 3M condition. Pigment analysis shows a deficit in chlorophyll content and increased carotenoid accumulation, especially lutein and zeaxanthin content. This study majorly explored the chloroplast transcripts of the D. salina cell as it is the major environmental sensor. Even though most of the photosystem transcripts showed moderate upregulation in hypersaline conditions in the transcriptome study, the western blot analysis showed degradation of the core as well as antenna proteins of both the photosystems. Among the upregulated chloroplast transcripts, chloroplast Tidi, flavodoxin IsiB, and carotenoid biosynthesis-related protein transcripts strongly proposed photosynthetic apparatus remodeling. Also, the transcriptomic study revealed the upregulation of the tetrapyrrole biosynthesis pathway (TPB) and identified the presence of a negative regulator of this pathway, called the s-FLP splicing variant. These observations point towards the accumulation of TPB pathway intermediates PROTO-IX, Mg-PROTO-IX, and P-Chlide, those earlier reported as retrograde signaling molecules. Our comparative transcriptomic approach along with biophysical and biochemical studies in D. salina grown under control (1.5 M NaCl) and hypersaline (3M NaCl) conditions, unveil an efficient retrograde signaling mechanism mediated remodeling of photosynthetic apparatus.

Integration of GWAS and RNA-Seq Analysis to Identify SNPs and Candidate Genes Associated with Alkali Stress Tolerance at the Germination Stage in Mung Bean.

Soil salt-alkalization seriously impacts crop growth and productivity worldwide. Breeding and applying tolerant varieties is the most economical and effective way to address soil alkalization. However, genetic resources for breeders to improve alkali tolerance are limited in mung bean. Here, a genome-wide association study (GWAS) was performed to detect alkali-tolerant genetic loci and candidate genes in 277 mung bean accessions during germination. Using the relative values of two germination traits, 19 QTLs containing 32 SNPs significantly associated with alkali tolerance on nine chromosomes were identified, and they explained 3.6 to 14.6% of the phenotypic variance. Moreover, 691 candidate genes were mined within the LD intervals containing significant trait-associated SNPs. Transcriptome sequencing of alkali-tolerant accession 132-346 under alkali and control conditions after 24 h of treatment was conducted, and 2565 DEGs were identified. An integrated analysis of the GWAS and DEGs revealed six hub genes involved in alkali tolerance responses. Moreover, the expression of hub genes was further validated by qRT-PCR. These findings improve our understanding of the molecular mechanism of alkali stress tolerance and provide potential resources (SNPs and genes) for the genetic improvement of alkali tolerance in mung bean.

Multi-Omics Pipeline and Omics-Integration Approach to Decipher Plant's Abiotic Stress Tolerance Responses.

The present day's ongoing global warming and climate change adversely affect plants through imposing environmental (abiotic) stresses and disease pressure. The major abiotic factors such as drought, heat, cold, salinity, etc., hamper a plant's innate growth and development, resulting in reduced yield and quality, with the possibility of undesired traits. In the 21st century, the advent of high-throughput sequencing tools, state-of-the-art biotechnological techniques and bioinformatic analyzing pipelines led to the easy characterization of plant traits for abiotic stress response and tolerance mechanisms by applying the 'omics' toolbox. Panomics pipeline including genomics, transcriptomics, proteomics, metabolomics, epigenomics, proteogenomics, interactomics, ionomics, phenomics, etc., have become very handy nowadays. This is important to produce climate-smart future crops with a proper understanding of the molecular mechanisms of abiotic stress responses by the plant's genes, transcripts, proteins, epigenome, cellular metabolic circuits and resultant phenotype. Instead of mono-omics, two or more (hence 'multi-omics') integrated-omics approaches can decipher the plant's abiotic stress tolerance response very well. Multi-omics-characterized plants can be used as potent genetic resources to incorporate into the future breeding program. For the practical utility of crop improvement, multi-omics approaches for particular abiotic stress tolerance can be combined with genome-assisted breeding (GAB) by being pyramided with improved crop yield, food quality and associated agronomic traits and can open a new era of omics-assisted breeding. Thus, multi-omics pipelines together are able to decipher molecular processes, biomarkers, targets for genetic engineering, regulatory networks and precision agriculture solutions for a crop's variable abiotic stress tolerance to ensure food security under changing environmental circumstances.

Stress response and tolerance mechanisms of spirobudiclofen exposure based on multiomics in Panonychus citri (Acari: Tetranychidae)

The toxicity of insecticides used in the field decreases gradually to sublethal concentrations over time. Therefore, it is necessary to study sublethal effects of pesticides for controlling population explosion. Panonychus citri is a global pest which control is based on insecticides. This study explores the stress responses of spirobudiclofen on the P.citri. Spirobudiclofen significantly inhibited survival and reproduction of P.citri, and the effects aggravated as concentration increased. The transcriptomes and metabolomes of spirobudiclofen-treated and control were compared to characterize spirobudiclofen molecular mechanism. Transcriptomics indicated stress induced by spirobudiclofen stimulated immune defense, antioxidative system, cuticle formation, and lipid metabolism, as deduced from RNA-seq analysis. Meanwhile, our study found that tolerance metabolism in P.citri was regulated by promoting the metabolism of glycerophospholipids, glycine, serine, and threonine. The results of this study can provide a basis for exploring the adaptation strategies of P.citri to spirobudiclofen stress.