In this study, Listeria monocytogenes and Escherichia coli were selected as reference bacteria, and the inhibitory effects and mechanisms of cell-free supernatants (CFS) of Limosilactobacillus fermentum 733 on its free-living bacteria and biofilm were investigated in depth. The findings demonstrated that L. fermentum 733 CFS displayed notable suppressive effects on L. monocytogenes and E. coli, which were caused by the loss of the cell membranes' structural integrity. This disturbance resulted in the release of intracellular adenosine triphosphate (ATP), alkaline phosphatase (ALP), and reactive oxygen species (ROS). Scanning electron microscopy and laser scanning confocal microscopy showed that L. fermentum 733 CFS disrupted L. monocytogenes and E. coli biofilm structure. L. fermentum 733 CFS inhibited partial population sensing and biofilm-associated gene expression of L. monocytogenes and E. coli, shown by fluorescence quantitative PCR (qPCR). Metabolomics analysis showed that L. fermentum 733 CFS strongly inhibited L. monocytogenes and E. coli by the disruption of both cellular structure and intracellular. These results offer novel perspectives and a theoretical foundation for the prevention of lactic acid bacteria (LAB) infections caused by L. monocytogenes and E. coli.