The reactivity of cold gas-phase clusters was investigated as a model for chemical evolution in interstellar molecular clouds. Chiral recognition using ions between amino acids and sugars was examined by mass spectrometry and ultraviolet spectroscopy measurements of gas-phase tryptophan (Trp) enantiomers hydrogen bonded with methyl-α-d-glucoside in Na+-containing or protonated forms at 8 K. The chiral recognition mechanism between Trp and the glucoside changed depending on the photoexcitation wavelength: the enantiomer-selective reactions at 265–280 nm and the electronic structure of Trp at 280–290 nm. The attachment of Na+ to d-Trp and the Cα–Cβ bond cleavage of d-Trp were the enantiomer-selective reactions in the Na+-containing and protonated clusters, respectively. The wavelength dependences of the enantiomer-selective reactions were similar between the Na+-containing and protonated clusters. This is because the enantiomer-selective reactions were triggered by photoinduced electron transfer from the indole ring to the carboxyl group of Trp in the clusters.