Mechanism Of Hydroxylation Research Articles

Mechanism of heterogeneous reaction between gaseous elemental mercury and H2O2 on Fe3O4 (1 1 0) surface

The Fe3O4 catalytic oxidation of gaseous elemental mercury (Hg0) has been regarded as a promising method to control mercury from flue gases given its high efficiency, magnetic separation, and recyclable properties. Density functional theory (DFT) calculations were performed to study the heterogeneous reaction mechanism between Hg0 and H2O2 over Fe3O4 (1 1 0) surface. The generation mechanism of surface hydroxyl on two Fe3O4 (1 1 0) layers was investigated. Binding energies, geometric parameters, and the Mulliken charge population of the possible configurations for Hg0 interaction were studied. Results provided evidences that the H2O2 prefers to break the OO bond and produces two OH groups, which combine with Hg0 on Fe3O4 (1 1 0) A layer. The calculated binding energies suggested that the process of OHHgOH and HgOH generation are exothermic on Fe3O4 (1 1 0) surface with H2O2. The Mulliken charge population revealed Hg oxidation when systems were in equilibrium because a large number of electrons transfer from Hg0 to the surface hydroxyl. The reaction of Hg0 oxidation followed the processes of Hg + OH → HgOH, HgOH + OH → HOHgOH, and OHHgOH desorption from the Fe3O4 (1 1 0) surface.

Isotope effects in mechanistic studies of l-tyrosine halogen derivatives hydroxylation catalyzed by tyrosinase

The kinetic (KIE) and solvent (SIE) isotope effect methods were used to investigate the mechanism of enzymatic hydroxylation of halogenated derivatives of l-tyrosine to l-DOPA catalyzed by the enzyme tyrosinase (EC 1.14.18.1). The values of deuterium KIE and SIE were obtained using the non-competitive method with spectrophotometric measurements. The Lineweaver–Burk plots were used for determination of the inhibition mode of 3′-iodo-l-tyrosine. Based upon kinetic effects values the mechanism of action of enzyme tyrosinase was proposed.

Direct Observation of Oxygen Rebound with an Iron-Hydroxide Complex.

The rebound mechanism for alkane hydroxylation was invoked over 40 years ago to help explain reactivity patterns in cytochrome P450, and subsequently has been used to provide insight into a range of biological and synthetic systems. Efforts to model the rebound reaction in a synthetic system have been unsuccessful, in part because of the challenge in preparing a suitable metal-hydroxide complex at the correct oxidation level. Herein we report the synthesis of such a complex. The reaction of this species with a series of substituted radicals allows for the direct interrogation of the rebound process, providing insight into this uniformly invoked, but previously unobserved process.

Decoding the Mechanism of Intramolecular Cu-Directed Hydroxylation of sp3 C-H Bonds.

The use of copper in directed C-H oxidation has been relatively underexplored. In a seminal example, Schönecker showed that copper and O2 promoted the hydroxylation of steroid-containing ligands. Recently, Baran (J. Am. Chem. Soc. 2015, 137, 13776) improved the reaction conditions to oxidize similar substrates with excellent yields. In both reports, the involvement of Cu2O2 intermediates was suggested. In this collaborative article, we studied the hydroxylation mechanism in great detail, resulting in the overhaul of the previously accepted mechanism and the development of improved reaction conditions. Extensive experimental evidence (spectroscopic characterization, kinetic analysis, intermolecular reactivity, and radical trap experiments) is provided to support each of the elementary steps proposed and the hypothesis that a key mononuclear LCuII(OOR) intermediate undergoes homolytic O-O cleavage to generate reactive RO• species, which are responsible for key C-H hydroxylation within the solvent cage. These key findings allowed the oxidation protocol to be reformulated, leading to improvements of the reaction cost, practicability, and isolated yield.

Effect of heat, UV radiation, and moisture on the decohesion kinetics of inverted organic solar cells

Organic solar cells subjected to environmental stressors such as heat, moisture, and UV radiation can undergo significant mechanical degradation, leading to delamination of layers and device failure. This paper reports the effect these stressors have on the mechanical integrity of active layers and interfaces as measured by subcritical debonding tests, and the in situ evolution of defects and fracture processes is characterized. At elevated temperatures below 50°C in inert conditions, significant device weakening was observed, an effect we attributed to a temperature-induced P3HT:PCBM delamination mechanism from the underlying ZnO. At 50°C in ambient conditions with UV exposure—selected to better simulate real-world environments—devices were more resistant to fracture because of an interfacial strengthening effect from increased hydrogen bonding where UV-induced Zn(OH)2 formation reinforced the interface with P3HT:PCBM. This photoinduced hydroxylation mechanism was determined from a decrease in the Zn/O ratio with increased UVA or UVB exposure, and hydroxylation was shown to directly correlate with the resistance to fracture in devices.

Re-evaluation of insect melanogenesis research: Views from the dark side.

Melanins (eumelanin and pheomelanin) are synthesized in insects for several purposes including cuticle sclerotization and color patterning, clot formation, organogenesis, and innate immunity. Traditional views of insect immunity detail the storage of pro-phenoloxidases inside specialized blood cells (hemocytes) and their release upon recognition of foreign bodies. Activated phenoloxidases convert monophenols into reactive quinones in a two-step enzymatic reaction, and until recently, the mechanism of tyrosine hydroxylation remained a mystery. Herein, we present our interpretations of these enzyme-substrate complexes. The resultant melanins are deposited onto the surface of microbes to immobilize, agglutinate, and suffocate them. Phenoloxidase activity and melanin production are not limited to the blood (hemolymph) or cuticle, as recent evidence points to more diverse, sophisticated interactions in the gut and with the resident symbionts. This review offers insight into the somewhat neglected areas of insect melanogenesis research, particularly in innate immunity, its role in beneficial insects such as pollinators, the functional versatility of phenoloxidases, and the limitations of common experimental approaches that may impede progress inadvertently.

Specific Enhancement of Catalytic Activity by a Dicopper Core: Selective Hydroxylation of Benzene to Phenol with Hydrogen Peroxide

AbstractA dicopper(II) complex, stabilized by the bis(tpa) ligand 1,2‐bis[2‐[bis(2‐pyridylmethyl)aminomethyl]‐6‐pyridyl]ethane (6‐hpa), [Cu2(μ‐OH)(6‐hpa)]3+, was synthesized and structurally characterized. This complex catalyzed selective hydroxylation of benzene to phenol using H2O2, thus attaining large turnover numbers (TONs) and high H2O2 efficiency. The TON after 40 hours for the phenol production exceeded 12000 in MeCN at 50 °C under N2, the highest value reported for benzene hydroxylation with H2O2 catalyzed by homogeneous complexes. At 22 % benzene conversion, phenol (95.2 %) and p‐benzoquinone (4.8 %) were produced. The mechanism of H2O2 activation and benzene hydroxylation is proposed.

Eclectic Hydroxylation of Benzene to Phenol Using Ferrites of Fe and Zn as Durable and Magnetically Retrievable Catalysts

Ferrites of iron and zinc were prepared and examined as catalysts for the eclectic hydroxylation of benzene in the presence of hydrogen peroxide as an oxidant under mild conditions. The obtained results revealed that iron ferrite is more efficient than zinc ferrite or other catalysts used in benzene hydroxylation. The efficacy of iron ferrite is attributed to the random occupation of the octahedral sites by divalent and trivalent iron cations, which eventually boosts the redox reaction within the octahedral site without altering the spinel structure. The catalyst durability testing revealed that the catalysts sustain the employed experimental conditions for five successive runs. The mechanism of benzene hydroxylation in the presence of iron ferrite and zinc ferrite was also suggested.

Controlling Excited State Single versus Double Proton Transfer for 2,2'-Bipyridyl-3,3'-diol: Solvent Effect.

In this work, we theoretically investigate the sequential excited state double proton transfer (ESDPT) mechanism of a representative intramolecular hydroxyl (OH)-type hydrogen molecule 2,2'-bipyridyl-3,3'-diol (BP(OH)2). We mainly adopt three kinds of different polar solvents (nonpolar cyclohexane (CYH), polar acetonitrile (ACN), and moderate chloroform (CHCl3)) to explore solvent effects on this system. Two intramolecular hydrogen bonds of BP(OH)2 are testified to be strengthened in the S1 state, which provides possibility for ESDPT process. Explorations of charge redistribution and potential energy surfaces (PESs) reveal ESDPT process. Searching transition state (TS) structures in different polar aprotic solvents, we successfully regulate and control the stepwise ESDPT behaviors of BP(OH)2 through solvent polarity.

Deep Convolutional Neural Networks for Predicting Hydroxyproline in Proteins

Background: Protein hydroxyproline is one type of post translational modification (PTM). Because protein sequence contains many uncharacterized residues of P, the question that needs to be answered is: Which ones can be hydroxylated, and which ones cannot? The solution will not only give a deeper understanding of the hydroxylation mechanism but can also lead to drug development. The evergrowing demand for better handling of protein sequences in the post-genomic age presents new prediction challenges. Keywords: Protein hydroxyproline, deep learning, convolutional neural network, pseudo amino acid composition (PseAAC), position-specific scoring matrix (PSSM).

Oxidation of benzoic acid by heat-activated persulfate: Effect of temperature on transformation pathway and product distribution

Heat activates persulfate (S2O82−) into sulfate radical (SO4−), a powerful oxidant capable of transforming a wide variety of contaminants. Previous studies have shown that an increase in temperature accelerates the rates of persulfate activation and contaminant transformation. However, few studies have considered the effect of temperature on contaminant transformation pathway. The objective of this study was to determine how temperature (T = 22–70 °C) influences the activation of persulfate, the transformation of benzoic acid (i.e., a model compound), and the distribution of benzoic acid oxidation products. The time-concentration profiles of the products suggest that benzoic acid was transformed via decarboxylation and hydroxylation mechanisms, with the former becoming increasingly important at elevated temperatures. The pathway through which the products were further oxidized was also influenced by the temperature of persulfate activation. Our findings suggest that the role of temperature in the persulfate-based treatment systems is not limited only to controlling the rates of sulfate and hydroxyl radical generation. The ability of sulfate radical to initiate decarboxylation reactions and, more broadly, fragmentation reactions, as well as the effect of temperature on these transformation pathways could be important to the transformation of a number of organic contaminants.

Reaction mechanism of sterol hydroxylation by steroid C25 dehydrogenase – Homology model, reactivity and isoenzymatic diversity

Steroid C25 dehydrogenase (S25DH) is a molybdenum-containing oxidoreductase isolated from the anaerobic Sterolibacterium denitrificans Chol-1S. S25DH is classified as ‘EBDH-like’ enzyme (EBDH, ethylbenzene dehydrogenase) and catalyzes the introduction of an OH group to the C25 atom of a sterol aliphatic side-chain. Due to its regioselectivity, S25DH is proposed as a catalyst in production of pharmaceuticals: calcifediol or 25-hydroxycholesterol. The aim of presented research was to obtain structural model of catalytic subunit α and investigate the reaction mechanism of the O2-independent tertiary carbon atom activation. Based on homology modeling and theoretical calculations, a S25DH α subunit model was for the first time characterized and compared to other S25DH-like isoforms. The molecular dynamics simulations of the enzyme-substrate complexes revealed two stable binding modes of a substrate, which are stabilized predominantly by van der Waals forces in the hydrophobic substrate channel. However, H-bond interactions involving polar residues with C3=O/C3-OH in the steroid ring appear to be responsible for positioning the substrate. These results may explain the experimental kinetic results which showed that 3-ketosterols are hydroxylated 5–10-fold faster than 3-hydroxysterols. The reaction mechanism was studied using QM:MM and QM-only cluster models. The postulated mechanism involves homolytic CH cleavage by the MoO ligand, giving rise to a radical intermediate with product obtained in an OH rebound process. The hypothesis was supported by kinetic isotopic effect (KIE) experiments involving 25,26,26,26-[2H]-cholesterol (4.5) and the theoretically predicted intrinsic KIE (7.0–7.2). Finally, we have demonstrated that the recombinant S25DH-like isoform catalyzes the same reaction as S25DH.

Degradation of sulfamethoxazole by UV, UV/H2O2 and UV/persulfate (PDS): Formation of oxidation products and effect of bicarbonate

The frequent detection of sulfamethoxazole (SMX) in wastewater and surface waters gives rise of concerns about their ecotoxicological effects and potential risks to induce antibacterial resistant genes. UV/hydrogen peroxide (UV/H2O2) and UV/persulfate (UV/PDS) advanced oxidation processes have been demonstrated to be effective for the elimination of SMX, but there is still a need for a deeper understanding of product formations. In this study, we identified and compared the transformation products of SMX in UV, UV/H2O2 and UV/PDS processes. Because of the electrophilic nature of SO4-, the second-order rate constant for the reaction of sulfate radical (SO4-) with the anionic form of SMX was higher than that with the neutral form, while hydroxyl radical (OH) exhibited comparable reactivity to both forms. The direct photolysis of SMX predominately occurred through cleavage of the NS bond, rearrangement of the isoxazole ring, and hydroxylation mechanisms. Hydroxylation was the dominant pathway for the reaction of OH with SMX. SO4- favored attack on NH2 group of SMX to generate a nitro derivative and dimeric products. The presence of bicarbonate in UV/H2O2 inhibited the formation of hydroxylated products, but promoted the formation of the nitro derivative and the dimeric products. In UV/PDS, bicarbonate increased the formation of the nitro derivative and the dimeric products, but decreased the formation of the hydroxylated dimeric products. The different effect of bicarbonate on transformation products in UV/H2O2 vs. UV/PDS suggested that carbonate radical (CO3-) oxidized SMX through the electron transfer mechanism similar to SO4- but with less oxidation capacity. Additionally, SO4- and CO3- exhibited higher reactivity to the oxazole ring than the isoxazole ring of SMX. Ecotoxicity of transformation products was estimated by ECOSAR program based on the quantitative structure-activity relationship analysis as well as by experiments using Vibrio fischeri, and these results indicated that the oxidation of SO4- or CO3- with SMX generated more toxic products than those of OH.

In-crystal reaction cycle of a toluene-bound diiron hydroxylase.

Electrophilic aromatic substitution is one of the most important and recognizable classes of organic chemical transformation. Enzymes create the strong electrophiles that are needed for these highly energetic reactions by using O2, electrons, and metals or other cofactors. Although the nature of the oxidants that carry out electrophilic aromatic substitution has been deduced from many approaches, it has been difficult to determine their structures. Here we show the structure of a diiron hydroxylase intermediate formed during a reaction with toluene. Density functional theory geometry optimizations of an active site model reveal that the intermediate is an arylperoxo Fe2+/Fe3+ species with delocalized aryl radical character. The structure suggests that a carboxylate ligand of the diiron centre may trigger homolytic cleavage of the O-O bond by transferring a proton from a metal-bound water. Our work provides the spatial and electronic constraints needed to propose a comprehensive mechanism for diiron enzyme arene hydroxylation that accounts for many prior experimental results.

A competing, dual mechanism for catalytic direct benzene hydroxylation from combined experimental-DFT studies.

A dual mechanism for direct benzene catalytic hydroxylation is described. Experimental studies and DFT calculations have provided a mechanistic explanation for the acid-free, Tp x Cu-catalyzed hydroxylation of benzene with hydrogen peroxide (Tp x = hydrotrispyrazolylborate ligand). In contrast with other catalytic systems that promote this transformation through Fenton-like pathways, this system operates through a copper-oxyl intermediate that may interact with the arene ring following two different, competitive routes: (a) electrophilic aromatic substitution, with the copper-oxyl species acting as the formal electrophile, and (b) the so-called rebound mechanism, in which the hydrogen is abstracted by the Cu-O moiety prior to the C-O bond formation. Both pathways contribute to the global transformation albeit to different extents, the electrophilic substitution route seeming to be largely favoured.

Mechanism of aromatic hydroxylation of lidocaine at a Pt electrode under acidic conditions

Aromatic hydroxylation reactions, which are mainly catalyzed by cytochrome P450 (CYP) enzymes in vivo, are some of the most important reactions of Phase I metabolism, because insertion of a hydroxyl group into a lipophilic drug compound increases its hydrophilicity and prepares it for subsequent Phase II metabolic conjugation reactions as a prerequisite to excretion. Aromatic hydroxylation metabolites of pharmaceuticals may be obtained through various synthetic and enzymatic methods Electrochemical oxidation is an alternative with advantages in terms of mild reaction conditions and less hazardous chemicals. In the present study, we report that aromatic hydroxylation metabolites of lidocaine can be readily obtained electrochemically under aqueous acidic conditions at platinum electrodes. Our results show that the dominant N-dealkylation reaction can be suppressed by decreasing the solution pH below 0.5 resulting in selective 3-hydroxylidocaine, which is an in vivo metabolite of lidocaine. Experiments in 18O labelled water indicated that water is the primary source of oxygen, while dissolved molecular oxygen contributes to a minor extent to the hydroxylation reaction.

Insights into Silica Bilayer Hydroxylation and Dissolution

Hydroxylation and dissolution of well-structured silica bilayer films grown on a ruthenium single-crystal support (SiO2/Ru(0001)) was studied by temperature programmed desorption and X-ray photoelectron spectroscopy (XPS). Water desorption signals from SiO2/Ru(0001) hydroxylated by electron-bombardment of adsorbed ice at 100 K were found to be comparable to those of hydroxylated bulk silica samples and attributed to adsorbed molecular water and silanol groups (vicinal and terminal). Isotopic exchange between 18O-labeled SiO2 and 16O-labeled water suggests the occurrence of dynamic siloxane bond cleavage and re-formation during electron bombardment. Together with the observed strong dependence of hydroxylation activity on ice coverage, which is found to increase with increasing thickness of the ice layer, a hydroxylation mechanism based on the activation of siloxane bonds by water radiolysis products (e.g. hydroxyls) and subsequent water dissociation is proposed. Dissolution rates obtained from the attenuation of Si 2p and O 1s XPS signal intensities upon exposure of bilayer SiO2/Ru(0001) to alkaline conditions at various temperatures are in agreement with the proposed rate model for bulk silica dissolution by OH− attack and provide further corroboration of the proposed hydroxylation mechanism.

Aromatic C-F Hydroxylation by Nonheme Iron(IV)-Oxo Complexes: Structural, Spectroscopic, and Mechanistic Investigations.

The synthesis and reactivity of a series of mononuclear nonheme iron complexes that carry out intramolecular aromatic C-F hydroxylation reactions is reported. The key intermediate prior to C-F hydroxylation, [FeIV(O)(N4Py2Ar1)](BF4)2 (1-O, Ar1 = -2,6-difluorophenyl), was characterized by single-crystal X-ray diffraction. The crystal structure revealed a nonbonding C-H···O═Fe interaction with a CH3CN molecule. Variable-field Mössbauer spectroscopy of 1-O indicates an intermediate-spin (S = 1) ground state. The Mössbauer parameters for 1-O include an unusually small quadrupole splitting for a triplet FeIV(O) and are reproduced well by density functional theory calculations. With the aim of investigating the initial step for C-F hydroxylation, two new ligands were synthesized, N4Py2Ar2 (L2, Ar2 = -2,6-difluoro-4-methoxyphenyl) and N4Py2Ar3 (L3, Ar3 = -2,6-difluoro-3-methoxyphenyl), with -OMe substituents in the meta or ortho/para positions with respect to the C-F bonds. FeII complexes [Fe(N4Py2Ar2)(CH3CN)](ClO4)2 (2) and [Fe(N4Py2Ar3)(CH3CN)](ClO4)2 (3) reacted with isopropyl 2-iodoxybenzoate to give the C-F hydroxylated FeIII-OAr products. The FeIV(O) intermediates 2-O and 3-O were trapped at low temperature and characterized. Complex 2-O displayed a C-F hydroxylation rate similar to that of 1-O. In contrast, the kinetics (via stopped-flow UV-vis) for complex 3-O displayed a significant rate enhancement for C-F hydroxylation. Eyring analysis revealed the activation barriers for the C-F hydroxylation reaction for the three complexes, consistent with the observed difference in reactivity. A terminal FeII(OH) complex (4) was prepared independently to investigate the possibility of a nucleophilic aromatic substitution pathway, but the stability of 4 rules out this mechanism. Taken together the data fully support an electrophilic C-F hydroxylation mechanism.

Steroid C25 dehydrogenase – the mechanism of regioselective hydroxylation of sterols and cholecalciferol

Steroid C25 dehydrogenase – the mechanism of regioselective hydroxylation of sterols and cholecalciferol

Synthesis of hydroxyl terminated liquid natural rubber by oxidative depolymerization of deproteinized natural rubber

Hydroxyl terminated liquid natural rubber (HTLNR) was prepared by the depolymerization of deproteinized natural rubber (DPNR) in mixture of toluene and water at 60oC for 24 hours in the presence of ammonium persulfate as an initiator and tetrahydrofuran (THF) as a homogenizing agent. GPC analysis revealed that the number-average molecular weight (Mn) and weight-average molecular weight (Mw) of HTLNR were found to be 4.334×103 g/mol and 11.702×103 g/mol, respectively, with polydispersity index (PDI) of 2.7. The chemical structure of HTLNR was determined by FTIR and 1H-NMR and 13C-NMR spectroscopic analysis. The mechanism of depolymerization and hydroxylation of NR to form HTNR based on the analytical data is also suggested in this study.