During the registration and processing of measurement information obtained by the MFTR-2100/40 radar system, there is a probability of missing values in the trajectory measurement data. Experience with the radar system indicates a high sensitivity of the angular channels to the propagation of the radar signal in the real atmosphere. As a result of these errors, object tracking may be lost over a certain period, causing periodic delays in data registration, necessitating the filling or restoring of missing values with acceptable accuracy. The built-in algorithms and mathematical methods of the WinTrack specialized software (SS) allow for the interpolation and extrapolation of the trajectory measurement data of the MFTR-2100/40 radar system for visual display and plotting of tracks, including ranges with missing values. However, the functional capabilities of the WinTrack SS are not designed for full and accurate restoration of missing values. Additionally, the limited tools of the WinTrack SS necessitate finding alternatives in other software to ensure the reliability of the restored results. Trajectory measurement data is a large dataset, so selecting the right method for filling in missing values is crucial to maintaining a low percentage of deviations in the obtained results. This publication examines the functional capabilities of the WinTrack SS that allow for the restoration of missing trajectory measurement values. The approximation of measured trajectory data values in the WinTrack SS enables partial filling of missing values upon export, but not for all data types. An algorithm for the process of restoring missing values in trajectory measurement data arrays is provided.