Relative Abundance Measurements Research Articles

RISK ASSESSMENT OF GREAT HORNED OWLS (BUBO VIRGINIANUS) EXPOSED TO POLYCHLORINATED BIPHENYLS AND DDT ALONG THE KALAMAZOO RIVER, MICHIGAN, USA

The great horned owl (GHO; Bubo virginianus) was used in a multiple lines of evidence study of polychlorinated biphenyls (PCBs) and p,p'-dichlorodiphenyltrichloroethane (DDT) exposures at the Kalamazoo River Superfund Site (KRSS), Kalamazoo, Michigan, USA. The study examined risks from total PCBs, including 2,3,7,8-tetrachlorodibenzo-p-dioxin equivalents (TEQWorld Health Organization [WHO]-Avian Toxicity Equivalency Factor [TEF]), and total DDTs (sum of DDT, dichlorodiphenyldichloroethylene [DDE], and dichlorodiphenyldichloroethane [DDD]; sigmaDDT) by measuring concentrations in eggs and nestling blood plasma in two regions of the KRSS (upper, lower) and an upstream reference area (RA). An ecological risk assessment compared concentrations of the contaminants of concern (COCs) in eggs or plasma to toxicity reference values. Productivity and relative abundance measures for KRSS GHOs were compared with other GHO populations. Egg shell thickness was measured to assess effects of p,p'-DDE. The concentrations of PCBs in eggs were as great as 4.7 x 10(2) and 4.0 x 10(4) ng PCB/g, wet weight at the RA and combined KRSS sites, respectively. Egg TEQ(WHO-Avian) calculated from aryl hydrocarbon receptor-active PCB congeners and WHO TEFs ranged to 8.0 and 1.9 x 10(2) pg TEQ(WHO-Avian)/g, (wet wt) at the RA and combined KRSS, respectively. Egg sigmaDDT concentrations were as great as 4.2 x 10(2) and 5.0 x 10(3) ng sigmaDDT/g (wet wt) at the RA and combined KRSS, respectively. Hazard quotients (HQs) for the upper 95% confidence interval (UCI) (geometric mean) and least observable adverse effect concentration (LOAEC) for COCs in eggs were < or = 1.0 for all sites. Hazard quotient values based on the no observable adverse effect concentration (NOAEC) 95% UCI in eggs were < or = 1.0, except at the LKRSS (PCB HQ = 3.1; TEQ(WHO-Avian) HQ = 1.3). Productivity and relative abundance measures indicated no population level effects in the UKRSS.

Quantifying raft proteins in neonatal mouse brain by 'tube-gel' protein digestion label-free shotgun proteomics

BackgroundThe low concentration and highly hydrophobic nature of proteins in lipid raft samples present significant challenges for the sensitive and accurate proteomic analyses of lipid raft proteins. Elimination of highly enriched lipids and interfering substances from raft samples is generally required before mass spectrometric analyses can be performed, but these procedures often lead to excessive protein loss and increased sample variability. For accurate analyses of the raft proteome, simplified protocols are needed to avoid excessive sample handling and purification steps.ResultsWe have devised a simple protocol using a 'tube-gel' protein digestion that, when combined with mass spectrometry, can be used to obtain comprehensive and reproducible identification and quantitation of the lipid raft proteome prepared from neonatal mouse brain. Lipid rafts (detergent-resistant membranes using Triton X-100 extraction) prepared from neonatal mouse brain were directly incorporated into a polyacrylamide tube-gel matrix without prior protein separation. After in-gel digestion of proteins, nanospray LC-MS/MS was used to analyze the extracted peptides, and the resulting spectra were searched to identify the proteins present in the sample. Using the standard 'label-free' proteomics approach, the total number of MS/MS spectra for the identified proteins was used to provide a measure of relative protein abundances. This approach was successfully applied to lipid rafts prepared from neonatal mouse brain. A total of 216 proteins were identified: 127 proteins (58.8%) were predicted to be membrane proteins, or membrane-associated proteins and 175 proteins (~80%) showed less than a 2-fold variation in the relative abundance in replicate samples.ConclusionThe tube-gel protein digestion protocol coupled with nanospray LC-MS/MS (TubeGeLC-MS/MS) offers a simple and reproducible method for identifying and quantifying the changes of relative abundances in lipid raft proteins from neonatal mouse brain and could become a useful approach for studying lipid raft proteins from various tissues.

CPUE as an index of relative abundance for nearshore reef fishes

Using density measurements derived by SCUBA diving, we have verified that research angling catch per unit of effort (CPUE) is a useful measurement of the relative abundance of nearshore reef species when the appropriate habitat is targeted. We found a strictly proportional relationship between lingcod and copper rockfish CPUE and density using a ranged major axis regression. This relationship did not hold for quillback rockfish since this study did not target their preferred depth range; nor for kelp greenling. Researchers must be aware of such limitations when using CPUE as a measure of relative abundance.

An allometric analysis of the number of muscle spindles in mammalian skeletal muscles.

An allometric analysis of the number of muscle spindles in relation to muscle mass in mammalian (mouse, rat, guinea-pig, cat, human) skeletal muscles is presented. It is shown that the trend to increasing number as muscle mass increases follows an isometric (length) relationship between species, whereas within a species, at least for the only essentially complete sample (human), the number of spindles scales, on average, with the square root rather than the cube root of muscle mass. An attempt is made to reconcile these apparently discrepant relationships. Use of the widely accepted spindle density (number of spindles g(-1) of muscle) as a measure of relative abundance of spindles in different muscles is shown to be grossly misleading. It is replaced with the residuals of the linear regression of ln spindle number against ln muscle mass. Significant differences in relative spindle abundance as measured by residuals were found between regional groups of muscles: the greatest abundance is in axial muscles, including those concerned with head position, whereas the least is in muscles of the shoulder girdle. No differences were found between large and small muscles operating in parallel, or between antigravity and non-antigravity muscles. For proximal vs. distal muscles, spindles were significantly less abundant in the hand than the arm, but there was no difference between the foot and the leg.

Quantitative Proteomic Comparison of Rat Mitochondria from Muscle, Heart, and Liver

Mitochondria, through oxidative phosphorylation, are the primary source of energy production in all tissues under aerobic conditions. Although critical to life, energy production is not the only function of mitochondria, and the composition of this organelle is tailored to meet the specific needs of each cell type. As an organelle, the mitochondrion has been a popular subject for proteomic analysis, but quantitative proteomic methods have yet to be applied to tease apart subtle differences among mitochondria from different tissues or muscle types. Here we used mass spectrometry-based proteomics to analyze mitochondrial proteins extracted from rat skeletal muscle, heart, and liver tissues. Based on 689 proteins identified with high confidence, mitochondria from the different tissues are qualitatively quite similar. However, striking differences emerged from the quantitative comparison of protein abundance between the tissues. Furthermore we applied similar methods to analyze mitochondrial matrix and intermembrane space proteins extracted from the same mitochondrial source, providing evidence for the submitochondrial localization of a number of proteins in skeletal muscle and liver. Several proteins not previously thought to reside in mitochondria were identified, and their presence in this organelle was confirmed by protein correlation profiling. Hierarchical clustering of microarray expression data provided further evidence that some of the novel mitochondrial candidates identified in the proteomic survey might be associated with mitochondria. These data reveal several important distinctions between mitochondrial and submitochondrial proteomes from skeletal muscle, heart, and liver tissue sources. Indeed approximately one-third of the proteins identified in the soluble fractions are associated predominantly to one of the three tissues, indicating a tissue-dependent regulation of mitochondrial proteins. Furthermore a small percentage of the mitochondrial proteome is unique to each tissue.

Characterization of the Mouse Brain Proteome Using Global Proteomic Analysis Complemented with Cysteinyl-Peptide Enrichment

We report a global proteomic approach for analyzing brain tissue and for the first time a comprehensive characterization of the whole mouse brain proteome. Preparation of the whole brain sample incorporated a highly efficient cysteinyl-peptide enrichment (CPE) technique to complement a global enzymatic digestion method. Both the global and the cysteinyl-enriched peptide samples were analyzed by SCX fractionation coupled with reversed phase LC-MS/MS analysis. A total of 48,328 different peptides were confidently identified (>98% confidence level), covering 7792 nonredundant proteins ( approximately 34% of the predicted mouse proteome). A total of 1564 and 1859 proteins were identified exclusively from the cysteinyl-peptide and the global peptide samples, respectively, corresponding to 25% and 31% improvements in proteome coverage compared to analysis of only the global peptide or cysteinyl-peptide samples. The identified proteins provide a broad representation of the mouse proteome with little bias evident due to protein pI, molecular weight, and/or cellular localization. Approximately 26% of the identified proteins with gene ontology (GO) annotations were membrane proteins, with 1447 proteins predicted to have transmembrane domains, and many of the membrane proteins were found to be involved in transport and cell signaling. The MS/MS spectrum count information for the identified proteins was used to provide a measure of relative protein abundances. The mouse brain peptide/protein database generated from this study represents the most comprehensive proteome coverage for the mammalian brain to date, and the basis for future quantitative brain proteomic studies using mouse models. The proteomic approach presented here may have broad applications for rapid proteomic analyses of various mouse models of human brain diseases.

Relative nuclear abundances inside ISS with Sileye-3/Alteino experiment

The experiment Sileye-3/Alteino was first operational on board the International Space Station between 27/4 and 1/5/2002. It is constituted of a cosmic ray silicon detector and an electroencephalograph and is used to monitor radiation environment and study the light flash phenomenon in space. As a stand-alone device, Sileye-3/Alteino can monitor in real time cosmic ray nuclei. In this work, we report on relative nuclear abundance measurements in different regions of the orbit for nuclei from B to Fe in the energy range above ≃60 MeV/n. Abundances of nuclei such as O and Ne relative to C are found to be increased in respect to particle composition outside of the station, whereas the Fe group is reduced. This effect could be ascribed to nuclear interactions with the hull of the station.

Mass Tagging Approach for Mitochondrial Thiol Proteins

A mass tagging approach is described for mitochondrial thiol proteins under nondenaturing conditions. This approach utilizes stable isotope-coded, thiol-reactive (4-iodobutyl)triphenylphosphonium (IBTP) reagents, i.e., the isotopomers IBTP-d(0) and IBTP-d(15). The mass spectrometric properties of IBTP-labeled peptides were evaluated using an ESI-q-TOF and a MALDI-TOF/TOF instrument. High energy collision induced dissociation (CID) in the TOF/TOF instrument caused side-chain fragmentation in the butyltriphenylphosphonium moiety-containing Cys-residue. By contrast, low energy CID in the qTOF instrument yielded sequence tags of IBTP-labeled peptides that were suitable for automated database searching. The IBTP labeling strategy was then applied to the analysis of a protein extract obtained from cardiac mitochondria. The relative abundance measurements for identified IBTP-labeled peptides showed an average variability for peptide quantitation of approximately 10% based on peak area ratios of ion signals for the d(0)/d(15)-tagged peptide pairs. The reactivity of the IBTP reagents was further studied by molecular modeling and visualization. The present study suggests that the IBTP reagent seems to show a bias toward highly surface-exposed protein thiols. Hence, the described mass tagging approach might become potentially useful in redox proteomics studies designed to identify protein thiols that are particularly prone to oxidative modifications.

Quantitative Proteomic Analysis Using Isobaric Protein Tags Enables Rapid Comparison of Changes in Transcript and Protein Levels in Transformed Cells

Isobaric tags for relative and absolute quantitation, an approach to concurrent, relative quantification of proteins present in four cell preparations, have recently been described. To validate this approach using complex mammalian cell samples that show subtle differences in protein levels, a model stem cell-like cell line (FDCP-mix) in the presence or absence of the leukemogenic oncogene TEL/PDGFRbeta has been studied. Cell lysates were proteolytically digested, and peptides within each sample were labeled with one of four isobaric, isotope-coded tags via their N-terminal and/or lysine side chains. The four labeled samples are mixed and peptides separated by two-dimensional liquid chromatography online to a mass spectrometer (LC-MS). Upon peptide fragmentation, each tag releases a distinct mass reporter ion; the ratio of the four reporters therefore gives relative abundances of the given peptide. Relative quantification of proteins is derived using summed data from a number of peptides. TEL/PDGFRbeta leukemic oncogene-mediated changes in protein levels were compared with those seen in microarray analysis of control and transfected FDCP-mix cells. Changes at the protein level in most cases reflected those seen at the transcriptome level. Nonetheless, novel differences in protein expression were found that indicate potential mechanisms for effects of this oncogene.

Resik: A Bent Crystal X-ray Spectrometer for Studies of Solar Coronal Plasma Composition

We describe the RESIK (REntgenovsky Spektrometr s Izognutymi Kristalami) instrument, consisting of two double-channel X-ray spectrometers, designed to observe solar active region and flare plasmas. RESIK is one of the instruments making up the scientific payload of the Russian CORONAS-F solar mission. The uncollimated spectrometer uses two silicon and two quartz bent crystals observing flare, active region and coronal spectra in four wavelength bands with a resolving power (λ/Δ λ) of ∼1000. The wavelength coverage, 3.3–6.1 A, includes emission lines of Si, S, Cl, Ar, and K and in the third diffraction order, the wavelength range includes He-like Fe lines (1.85 A) and Ni lines (1.55 A) with dielectronic satellites, emitted during intense, hot flares. The instrument is believed to be the best calibrated space-borne crystal spectrometer flown to date. The spectrometer dynamically adjusts the data gathering intervals from 1 s to 5 minutes, depending on the level of solar X-ray emission at the time of observation. The principal aims of RESIK are the measurements of relative and absolute element abundances in the emitting plasma and the temperature distribution of plasma (differential emission measure) over the temperature interval 3 and 50 MK. This paper summarizes the scientific objectives of RESIK and describes the design, characteristics, and performance of the instrument.

An assessment of indices of relative and absolute abundance for monitoring populations of small mammals

Abstract Knowledge of small-mammal population densities and species richness values are crucial to wildlife conservation and many ecological investigations. The relationship between estimates of absolute abundance and relative abundances of small-mammal populations is unclear. Therefore, from 1999–2001 measures of relative and absolute abundance of small mammals were compared across a terrestrial landscape using 3 vegetation communities (forest, early-successional field, and forest-field edge) in western Tennessee. We used a catch/unit effort index derived from transect sampling to estimate relative abundance and 2 estimates of absolute abundance, Mt+1 (the number of unique individuals captured) and Nest (a population estimate obtained from statistical models). These 2 estimates were derived from mark-recapture sampling on trapping grids. Using both sampling procedures, we conducted trapping with Sherman live traps during autumn, winter, and spring for 2 years. We tested the prediction that the pattern of...

Evaluation of the acid-cleavable isotope-coded affinity tag reagents: application to camptothecin-treated cortical neurons.

The new generation of isotope-coded affinity tag (ICAT) reagents have been evaluated by labeling an equimolar amount of bovine serum albumin (BSA) with ICAT-12C9 and ICAT-13C9, combining the mixtures, digesting them with trypsin and analyzing the digestate both by muRPLC-tandem MS and by matrix-assisted laser desorption ionization (MALDI) TOF/TOF MS. The use of 13C in place of 2H resulted in both of the labeled peptides having identical elution characteristics in a reversed-phase separation. This similarity in elution allows ICAT-labeled peptides to be effectively analyzed using a muRPLC-MALDI-MS strategy as well. All of the cysteinyl-containing tryptic peptides from BSA were identified with only a 10% variation in the relative abundance measurements between the light and heavy versions of each peptide. A facile method for the removal of contaminants that arise from the cleaved biotin moiety that otherwise interfere with downstream separations and MS analysis has also been developed. The new ICAT reagents were then applied to the analysis of a cortical neuron proteome sample to identify proteins regulated by the antitumor drug, camptothecin.

Successional patterns on pen shell communities at local and regional scales

Summary I present a successional study of marine organisms on pen shells (Atrina rigida) at different regions of St Joe Bay, Florida. By incorporating measures of relative abundance and assembly time I show how the relationship between local and regional diversity develops through different successional stages. The results showed that, with time, motile species richness increases significantly while evenness indices remain high and constant. Sessile species, on the other hand, increased in both species richness and evenness through time. For the motile species, regions seem to remain different while local saturation is observed. These results suggest that this group is under species‐sorting: species are mobile enough that recruits and adult dispersal within a region maintain differences among regions, while local communities are saturated. For the sessile species, the local–regional relationship was unsaturated at all sampling dates with both untransformed and rarefied data. Regions are initially similar in community structure, then differ through time to become similar again at the last sampling date. This may reflect a priority effect: propagules that arrive at a shell may initially exert influence on the species composition on a shell, so that at intermediate sampling times regions differ in community structure. However, at the last sampling there were no differences detected among regions, suggesting that dispersal distances might be larger for this group of species. These results suggest the following. (1) The degree of species saturation will depend on the successional stage of a community. (2) Incorporating species abundances (i.e. through rarefaction or other techniques) demonstrates the role of species commonness or rarity in determining patterns of community diversity at different scales. (3) Depending on the group of species studied, the size of the region will vary and will influence the local–regional dynamics: the perceived region for sessile species may be larger than for motile species.

Tandem mass tags: a novel quantification strategy for comparative analysis of complex protein mixtures by MS/MS.

A novel MS/MS-based analysis strategy using isotopomer labels, referred to as "tandem mass tags" (TMTs), for the accurate quantification of peptides and proteins is described. The new tags are designed to ensure that identical peptides labeled with different TMTs exactly comigrate in all separations. The tags require novel methods of quantification analysis using tandem mass spectrometry. The new tags and analysis methods allow peptides from different samples to be identified by their relative abundance with greater ease and accuracy than other methods. The new TMTs permit simultaneous determination of both the identity and relative abundances of peptide pairs using a collision induced dissociation (CID)-based analysis method. Relative abundance measurements made in the MS/MS mode using the new tags are accurate and sensitive. Compared to MS-mode measurements, a very high signal-to-noise ratio is achieved with MS/MS based detection. The new tags should be applicable to a wide variety of peptide isolation methods.

Current Strategies for Quantitative Proteomics

The chapter focuses on the current strategies for quantitative proteomics. The establishment of an absolute quantitation requires the use of internal standards of known concentration, an impossible scenario considering the discovery-driven nature of proteomic studies and the complexity of the samples being analyzed. There are two primary techniques to measure the relative abundances of proteins from distinct cell populations. These techniques make use of two of the primary tools in proteomics today: two-dimensional polyacrylamide gel electrophoresis (2D-PAGE) and mass spectrometry (MS). The use of 2D-PAGE in quantitative proteomics is relatively straightforward. Protein extracts from two distinct cell populations are separated on two different 2D-PAGE gels. Two-dimensional gel electrophoresis is an important separation technique for proteomics research, whereby qualitative, as well as quantitative protein expressions can be investigated. The broad proteomic identification capabilities of these solution-based techniques combined with MS have led to the development of methods to quantitate the proteins being detected. The most popular example of these methodologies utilizes a reagent referred to as “isotope-coded affinity tags” (ICAT) that allows the global measurements of peptide relative abundances from virtually any source. The second technique relies on MS to measure relative abundances of proteins. This measurement is commonly accomplished through the use of stable isotopes to differentially label proteins from different sources. One of the most exciting aspects of more recent proteomic developments is the development of both gel-based and solution-based labeling strategies that allow relative protein abundance changes to be measured in cell systems. Gel-based technologies such as difference gel electrophoresis (DIGE) and melting profile (MP) enable thousands of protein abundances to be compared across cell systems in a precise and relatively high throughput manner.

PLACEMENT OF NETS FOR BATS: EFFECTS ON PERCEIVED FAUNA

We used mistnets to survey bats at 41 sites throughout the Shawnee National Forest in southern Illinois during the summers of 1999 and 2000. Unlike most previous studies, we placed nets in the interior of forest stands as well as the more typical placement along edge habitats associated with water. We captured 417 individual bats representing 10 species. Of these, 168 individuals (40.3%) and 8 species were collected in interior forest. Northern long-eared bats (Myotis septentrionalis) were caught significantly more often in interior forest, whereas red bats (Lasiurus borealis), eastern pipistrelles (Pipistrellus subflavus), and big brown bats (Eptesicus fuscus) were netted more often in edge habitats. In contiguous forest, especially within the geographic range of M. septentrionalis, a more accurate measure of bat diversity and relative abundance is obtained by placing nets in interior forest as well as edge habitats.

An accurate mass tag strategy for quantitative and high-throughput proteome measurements.

We describe and demonstrate a global strategy that extends the sensitivity, dynamic range, comprehensiveness, and throughput of proteomic measurements based upon the use of peptide "accurate mass tags" (AMTs) produced by global protein enzymatic digestion. The two-stage strategy exploits Fourier transform-ion cyclotron resonance (FT-ICR) mass spectrometry to validate peptide AMTs for a specific organism, tissue or cell type from "potential mass tags" identified using conventional tandem mass spectrometry (MS/MS) methods, providing greater confidence in identifications as well as the basis for subsequent measurements without the need for MS/MS, and thus with greater sensitivity and increased throughput. A single high resolution capillary liquid chromatography separation combined with high sensitivity, high resolution and accurate FT-ICR measurements has been shown capable of characterizing peptide mixtures of significantly more than 10(5) components with mass accuracies of < 1 ppm, sufficient for broad protein identification using AMTs. Other attractions of the approach include the broad and relatively unbiased proteome coverage, the capability for exploiting stable isotope labeling methods to realize high precision for relative protein abundance measurements, and the projected potential for study of mammalian proteomes when combined with additional sample fractionation. Using this strategy, in our first application we have been able to identify AMTs for >60% of the potentially expressed proteins in the organism Deinococcus radiodurans.

Advanced mass spectrometric methods for the rapid and quantitative characterization of proteomes

Progress is reviewed towards the development of a global strategy that aims to extend the sensitivity, dynamic range, comprehensiveness and throughput of proteomic measurements based upon the use of high performance separations and mass spectrometry. The approach uses high accuracy mass measurements from Fourier transform ion cyclotron resonance mass spectrometry (FTICR) to validate peptide ‘accurate mass tags’ (AMTs) produced by global protein enzymatic digestions for a specific organism, tissue or cell type from ‘potential mass tags’ tentatively identified using conventional tandem mass spectrometry (MS/MS). This provides the basis for subsequent measurements without the need for MS/ MS. High resolution capillary liquid chromatography separations combined with high sensitivity, and high resolution accurate FTICR measurements are shown to be capable of characterizing peptide mixtures of more than 105 components. The strategy has been initially demonstrated using the microorganisms Saccharomyces cerevisiae and Deinococcus radiodurans. Advantages of the approach include the high confidence of protein identification, its broad proteome coverage, high sensitivity, and the capability for stableisotope labeling methods for precise relative protein abundance measurements. Abbreviations: LC, liquid chromatography; FTICR, Fourier transform ion cyclotron resonance; AMT, accurate mass tag; PMT, potential mass tag; MMA, mass measurement accuracy; MS, mass spectrometry; MS/MS, tandem mass spectrometry; ppm, parts per million.

Complementary Profiling of Gene Expression at the Transcriptome and Proteome Levels in Saccharomyces cerevisiae

Using an integrated genomic and proteomic approach, we have investigated the effects of carbon source perturbation on steady-state gene expression in the yeast Saccharomyces cerevisiae growing on either galactose or ethanol. For many genes, significant differences between the abundance ratio of the messenger RNA transcript and the corresponding protein product were observed. Insights into the perturbative effects on genes involved in respiration, energy generation, and protein synthesis were obtained that would not have been apparent from measurements made at either the messenger RNA or protein level alone, illustrating the power of integrating different types of data obtained from the same sample for the comprehensive characterization of biological systems and processes.

Island biogeography and metapopulation dynamics of Bahamian ants

AimI examined the island biogeography and metapopulation dynamics of ants inhabiting two archipelagos of small Bahamian islands. Of particular interest were measurement and comparison of turnover rates, examination of variation in relative population abundances, and the effect of a hurricane force disturbance on the ant fauna of these small islands.LocationArchipelagos of small islands in the central Exumas and near the northeast coast of Andros, Bahamas.MethodsAnts occupying small islands were surveyed using tuna and honey baits. I surveyed ninety‐three islands in the Exumas in 1998 and fifty‐eight islands at Andros in 1999, to compare with earlier surveys in both regions. The proportions of baits occupied were used as a measure of relative population abundance. A subset of seventeen small islands in the Exumas was surveyed in 1999 in the aftermath of Hurricane Floyd.ResultsMean annual relative turnover rates were low: &lt;2.5% year−1 on a per island basis, and &lt;7% year−1 on a per species basis. Rates of immigration and extinction were similar, although immigrations exceeded extinctions in some comparisons. Relative population abundances of the two most common ant species varied inversely with each other. One species revealed a strong positive correlation with recent rainfall, whereas another varied strongly inversely. No extinctions of ants occurred on the seventeen small islands surveyed after Hurricane Floyd.Main conclusionsAnts were found to be ubiquitous in this system, occurring on almost all vegetated islands. Ant populations were persistent over the period of study, and species rarely became extinct or colonized islands. The few instances of turnover observed appeared to occur randomly with respect to physical island characteristics. The correlational data suggest an interaction of interspecific competition and precipitation affect relative population abundances. Ants were found to be resistant to hurricane‐force disturbances. In the short term (one decade), the ant fauna of these islands appears to be in a state of static equilibrium, although non‐equilibrial dynamics may better characterize the system over longer time periods (several decades).