We present a method to accurately estimate the bathymetry and water sound speed in shallow waters using overlapping swaths obtained from a Multi-Beam Echo Sounder (MBES). The method is designed to correct the errors in the bathymetry manifested mainly in the outer beams of the MBES. The errors are caused by deviations in sound speed, which occur, for example, in estuaries where fresh river water mixes with seawater. Simulations show that we are able to simultaneously estimate the mean sound speed and the bathymetry. This is accomplished by minimizing the differences between the MBES measurements in the overlap region using a Levenberg-Marquardt optimization routine. We also present an application of the method to real data obtained at the fairway to the harbour of Rotterdam, The Netherlands. Analysis shows that the inverted sound speed agrees well with the measured sound speed at the transducer. However, the uncertainties are larger when the track-to-track distance is ̃2 times the depth. Therefore, we also discuss the optimal distance between sailed tracks. The method appears to be a promising tool for the accurate mapping of sea floors in shallow-water areas with a complex sound-speed profile.
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