Introduction: About 15% of patients with stroke show elevated Troponin T levels without presenting an acute coronary syndrome. Dysbalance in the autonomous nervous system is discussed as a possible reason. However, it remains unknown which brain regions affect specific autonomous biosignals. Methods: Prospectively from July 2018 to May 2019 we performed simultaneous non-invasive 30-min recordings of autonomous biosignals with all patients at our centre suffering from an ischaemic stroke within the last 7 days. Previously described autonomous risk factors were investigated and a lesion symptom mapping based on MRI was done. Results: In total, 100 patients with ischaemic stroke were measured. Subsequently 10 patients had to be excluded because of atrial fibrillation during recording, resulting in a study population of 90 patients. Mean age was 64.9 years, 38 patients (42.2%) were female. Mean NIHSS-Score at first admission was 3.7 points. The five parameters baroreflex sensitivity (BRS), deceleration capacity of the heart rate, expiration-triggered sinus arrhythmia, mean heart rate and average respiration rate were analysed for their association with ischaemic lesion location. Using established dichotomy limits in the lesion symptom mapping we could find risk factor related overlaps in different brain regions, such as an association of disturbed BRS with pontine strokes. Conclusion: Previous studies show that patients with abnormalities in autonomous parameters have higher cardiovascular risk. Identifying brain regions that affect the cardiac autonomous system is relevant for better understanding the underlying pathophysiology as well as early identification of these patients at risk. It is interesting to speculate if patients with lesions in these brain regions could benefit from early cardiologic surveillance. We are currently validating our findings with a higher sample size and follow up data.