Haemophilus influenzae (family Pasteurellaceae) is a coccobacillus, which is a non-spore-forming, non-motile, and non-acid-fast Gram-negative bacteria, present in upper respiratory tract causing epiglottitis, chronic bronchitis, meningitis, sinusitis, and community-acquired pneumonia. H. influenzae is resistant to certain antibiotics; novel drug discoveries are needed. In the present study, B. lyceum and F. cretica plant phytochemicals were tested in vitro against H. influenzae. Zones of inhibition were measured after the crude extract was tested using a well diffusion method against H. influenzae cultured on chocolate agar. Methanolic crude extract from B. lyceum showed a maximum zone of inhibition (32 mm) followed by ethanolic extract (30 mm). Similarly, methanolic extract from F. cretica showed maximum zone of inhibition (29 mm) followed by ethanolic extract (27.5 mm). Cytotoxic factor outer membrane protein (OMP) from H. influenzae was docked with the previously identified phytochemicals of these plants. In silico analysis shows that phytic acid from these plants is the most potent inhibitor of outer membrane protein (P6) followed by sindamine and karakuramine. The present study recommends that B. lyceum phytochemicals can be synergistically used as a potential drug against H. influenzae.