To characterize a novel ene-reductase from Meyerozyma guilliermondii and achieve the ene-reductase-mediated reduction of activated C=C bonds. The gene encoding an ene-reductase was cloned from M. guilliermondii. Sequence homology analysis showed that MgER shared the maximal amino acid sequence identity of 57% with OYE2.6 from Scheffersomyces stipitis. MgER showed the highest specific activity at 30°C and pH 7 (100mM sodium phosphate buffer), and excellent stereoselectivities were achieved for the reduction of (R)-carvone and ketoisophorone. Under the reaction conditions (30°C and pH 7.0), 150mM (R)-carvone could be completely converted to (2R,5R)-dihydrocarvone within 22h employing purified MgER as catalyst, resulting in a yield of 98.9% and an optical purity of >99% d.e. MgER was characterized as a novel ene-reductase from yeast and showed great potential for the asymmetric reduction of activated C=C bonds of α,β-unsaturated compounds.