Decisions regarding forest typology, management and protection are often based on the structures of present-day forests, ignoring their successional history. Forests growing on kames, eskers and various moraine hillocks common in regions with Holocene glaciation are good examples of this approach. In Estonia, these forests locally persist as fragments of continuous primary forest, but usually they are situated on former slash-and-burn areas (bushlands) or reforested agricultural land. Our aim was to elucidate the strength of the effect of long-term land-use history on the present-day vegetation compositions of mature hillock forests and their soil chemistry. It appeared that even the mature secondary hillock forests are still distinct from historically continuous stands in terms of species composition. We discovered connections between stand history and species content in hillock forests as well as transformed soil properties. The carbon and nitrogen contents in the humus horizons of secondary forests are lower while their carbon–nitrogen ratios are higher than in continuous forests. The relationship between vegetation and stand history is demonstrated by the higher proportions of anthropophytic and apophytic species in the herb layer of the secondary forests. The presence of species that are tolerant of anthropogenic impact on the secondary hillock forests floor can also be partly explained by the effect of different species in the tree and shrub layers, gaps in the tree canopy, and the boundary effect caused by the small areas of forest patches, neighboring grasslands or fields. The extinction debt in secondary communities should also be considered.