Matter Cycling Research Articles

Linking nematode trophic diversity to plantation identity and soil nutrient cycling

Ecological services provided by forest plantations depend on soil biodiversity, which encompasses taxonomic and functional diversity. These diversity components may respond specifically to environmental changes with consequences for soil functions. Given the large differences in plant-derived resource input between coniferous and broadleaved plantations, we investigated their impact on nematode species and trophic diversity, and on the soil nutrient cycling. The establishment of plantations (Larix gmelinii, Pinus tabuliformis, and Cercidiphyllum japonicum) 30 years ago led to a 31 %-37 % reduction in nematode species diversity, which is connected with decreased microbial biomass in soil. The reduced species diversity, however, was not linked to the cycling of organic matter, nitrogen, or phosphorus. Coniferous plantations (Larix gmelinii and Pinus tabuliformis) reduced nematode trophic diversity (34 %-55 %), indicating a strong decline in herbivorous and omnivorous-predatory groups of the food webs. This decline was primarily attributed to moisture limitations and reduced litter quality, and decreased nutrient cycling within the coniferous plantations. Conversely, the broadleaved plantation (Cercidiphyllum japonicum) maintained a complex nematode trophic structure with intensive nutrient cycling. Consequently, the trophic functional traits of nematode communities were determined by resource availability and linked to nutrient cycling in soil after plantation establishment.

Nickel's behaviour in marine sediments under aerobic to anaerobic diagenetic conditions

In the marine environment, nickel distributions are linked to the biogeochemical cycling of both organic matter and manganese. Thus, Ni and its isotopes have the potential to be used to reconstruct changes of bioproductivity and oxygenation in paleoenvironments. However, their utility relies on an understanding of the behaviour of Ni in modern marine environments. Here we investigate the distribution of Ni under a range of oxidation-reduction conditions, with organic carbon (Corg) burial rates that range from approximately 0.08 to 8.4 mmol m−2 d−1, none of the sites show deep (> 5 cm) penetration of dissolved oxygen into the sediment. We present Ni concentrations for sediments and pore fluids, as well as Ni isotope compositions from pore fluids, from the California and Mexico continental margins. The sites are sufficiently reducing that solid-phase Mn concentrations are typically <1000 ppm, but two of the stations, where oxygenated bottom water bathes the underlying sediment, have near-surface sediment Mn concentrations that reach up to 2.3%.Dissolved Ni is lower in pore fluids for stations with high solid phase Corg compared to those stations with oxygenated bottom water and high solid phase Mn concentrations. The calculated benthic fluxes of Ni at all stations are small relative to their burial rates, which implies a high Ni burial efficiency (> 85%). Pore fluid δ60Ni values range from approximately −0.39 to +2.36 ‰, with the higher δ60Ni values occurring at the Corg-rich station, and the lower values at the Mn-rich stations. At the station with the highest Corg content, the distribution of solid-phase Ni as a function of Corg content is consistent with the strong association of Ni with Corg seen at open-ocean upwelling margins globally. In contrast, the other stations investigated here clearly do not show such an association. Our data offer support for the notion that Ni accumulation within sediments is linked to organic matter accumulation in regions of high photic zone productivity and where the sediments are reducing. However, at the sites in our study where Mn oxidation-reduction reactions occur near the sediment-water boundary, any simple relationship between Ni and Corg burial is obfuscated. With a sufficiently deep oxygen penetration depth and the formation of a solid-phase Mn oxide layer, Ni burial within the sediment can be highly efficient. Importantly, Ni is well preserved in sediments deposited under the full range of conditions studied here. This observation of high Ni preservation is an important constraint if Ni is to be used as a proxy to reconstruct paleoenvironmental conditions.

Polystyrene microplastics facilitate formation of refractory dissolved organic matter and reduce CO2 emissions

Microplastics, as a type of anthropogenic pollution in aquatic ecosystems, affect the carbon cycle of organic matter. Although some studies have investigated the effects of microplastics on dissolved organic matter (DOM), the impact of alterations in the chemical properties of microplastics on refractory DOM and carbon release remains unclear. Here, we observed that microplastic treatments (e.g., polystyrene, PS) altered the composition and function of microbial community, notably increasing the abundance of microbial families involved in consuming easily degradable organic matter. During the process in which microbial community decomposed organic matter into DOM, PS underwent surface oxidation. The oxidized PS aggregated with DOM and microorganisms through electrostatic interactions and chemical bonds. Moreover, these interactions between oxidized PS and microbial community affect the utilization of organic matter, resulting in a significant decrease in CO2 emissions. Specifically, total CO2 emissions decreased by approximately 23.76 % with 0.1 mg/L PS treatment and by 44.97 % with 10 mg/L PS treatment compared to those in PS-free treatments over the entire reaction. These findings underscored the significance of the chemical properties of PS in the interactions among DOM and microorganisms, emphasizing the potential impact of PS microplastics on the carbon cycle in ecosystems.

Anthropogenically Driven Changes in the Carbon to Phosphorus Ratio of Marine Dissolved Organic Matter

AbstractMarine dissolved organic matter (DOM) cycles play a pivotal role in sustaining marine ecosystems and regulating the ocean's carbon sequestration from the atmosphere. However, the response of DOM cycles, including dissolved organic carbon (DOC) and dissolved organic phosphorus (DOP), to future climate change remains highly uncertain. Using the Community Earth System Model version 2 large ensemble simulations, we find that the C:P ratios in DOM are projected to increase by up to two‐fold in oligotrophic gyres by 2100. Increased upper ocean stratification reduces surface phosphate availability, thereby elevating phytoplankton C:P ratios and enhancing phytoplankton utilization of DOP, both acting to deprive DOM of P. Moreover, ocean stratification has a direct effect on exporting less DOC to the subsurface while accumulating more DOC at the sea surface. As a result of the strong sensitivity to ocean surface warming, the anthropogenically driven trends in upper ocean DOM concentration and its C:P ratios are estimated to emerge earlier from the simulated natural variability than upper ocean phosphate concentrations and net primary production—two key biogeochemical variables that are frequently monitored. This study suggests that changes in the C:P ratios of DOM could serve as a sensitive fingerprint of anthropogenic ocean warming, potentially exerting broad impacts on marine microbes. Our estimated 4% reduction in the globally integrated DOC export below 100 m is comparable to a 2% reduction in particulate organic carbon (POC) export by 2100, implying that global warming is likely to weaken the biological carbon pump through both DOC and POC.

Experimental Open Air Burning of Vegetation Enhances Organic Matter Chemical Heterogeneity Compared to Laboratory Burns.

Wildfires produce solid residuals that have unique chemical and physical properties compared to unburned materials, which influence their cycling and fate in the natural environment. Visual burn severity assessment is used to evaluate post-fire alterations to the landscape in field-based studies, yet muffle furnace methods are commonly used in laboratory studies to assess molecular scale alterations along a temperature continuum. Here, we examined solid and leachable organic matter characteristics from chars visually characterized as low burn severity that were created either on an open air burn table or from low-temperature muffle furnace burns. We assessed how the different combustion conditions influence solid and dissolved organic matter chemistries and explored the potential influence of these results on the environmental fate and reactivity. Notably, muffle furnace chars produced less leachable carbon and nitrogen than open air chars across land cover types. Organic matter produced from muffle furnace burns was more homogeneous than open air chars. This work highlights chemical heterogeneities that exist within a single burn severity category, potentially influencing our conceptual understanding of pyrogenic organic matter cycling in the natural environment, including transport and processing in watersheds. Therefore, we suggest that open air burn studies are needed to further advance our understanding of pyrogenic organic matter's environmental reactivity and fate.

Near-natural streams: Spatial factors are key in shaping multiple facets of zooplankton α and β diversity

In near-natural basins, zooplankton are key hubs for maintaining aquatic food webs and organic matter cycles. However, the spatial patterns and drivers of zooplankton in streams are poorly understood. This study registered 165 species of zooplankton from 147 sampling sites (Protozoa, Rotifers, Cladocera and Copepods), integrating multiple dimensions (i.e., taxonomic, functional, and phylogenetic) and components (i.e., total, turnover, and nestedness) of α and β diversity. This study aims to reveal spatial patterns, mechanisms, correlations, and relative contribution of abiotic factors (i.e., local environment, geo-climatic, land use, and spatial factors) through spatial interpolation (ordinary kriging), mantel test, and variance partitioning analysis (VPA). The study found that α diversity is concentrated in the north, while β diversity is more in the west, which may be affected by typical habitat, hydrological dynamics and underlying mechanisms. Taxonomic and phylogenetic β diversity is dominated by turnover, and metacommunity heterogeneity is the result of substitution of species and phylogeny along environmental spatial gradients. Taxonomic and phylogenetic β diversity were strongly correlated (r from 0.91 to 0.95), mainly explained by historical/spatial isolation processes, community composition, generation time, and reproductive characteristics, and this correlation provides surrogate information for freshwater conservation priorities. In addition, spatial factors affect functional and phylogenetic α diversity (26%, 28%), and environmental filtering and spatial processes combine to drive taxonomic α diversity (10%) and phylogenetic β diversity (11%). Studies suggest that spatial factors are key to controlling the community structure of zooplankton assemblages in near-natural streams, and that the relative role of local environments may depend on the dispersal capacity of species. In terms of diversity conservation, sites with high variation in uniqueness should be protected (i) with a focus on the western part of the thousand islands lake catchment and (ii) increasing effective dispersal between communities to facilitate genetic and food chain transmission.

Substrate uptake patterns shape niche separation in marine prokaryotic microbiome.

Marine heterotrophic prokaryotes primarily take up ambient substrates using transporters. The patterns of transporters targeting particular substrates shape the ecological role of heterotrophic prokaryotes in marine organic matter cycles. Here, we report a size-fractionated pattern in the expression of prokaryotic transporters throughout the oceanic water column due to taxonomic variations, revealed by a multi-"omics" approach targeting ATP-binding cassette (ABC) transporters and TonB-dependent transporters (TBDTs). Substrate specificity analyses showed that marine SAR11, Rhodobacterales, and Oceanospirillales use ABC transporters to take up organic nitrogenous compounds in the free-living fraction, while Alteromonadales, Bacteroidetes, and Sphingomonadales use TBDTs for carbon-rich organic matter and metal chelates on particles. The expression of transporter proteins also supports distinct lifestyles of deep-sea prokaryotes. Our results suggest that transporter divergency in organic matter assimilation reflects a pronounced niche separation in the prokaryote-mediated organic matter cycles.

Investigating the physiological ecology of mesopelagic zooplankton in the Scotia sea (Southern ocean) using lipid and stable isotope signatures

The mesopelagic zooplankton community plays an important role in the cycling and sequestration of carbon via the biological pump. However, little is known about the physiology and ecology of key taxa found within this region, hindering our understanding of their influence on the pathways of energy and organic matter cycling. We sampled the eight most abundant zooplankton (Calanoides acutus, Rhincalanus gigas, Paraeuchaeta spp., Chaetognatha, Euphausia triacantha, Thysanoessa spp., Themisto gaudichaudii and Salpa thompsoni) from within the mesopelagic zone in the Scotia Sea during a sinking diatom bloom and investigated their physiological ecology using lipid biomarkers and stable isotopic signatures of nitrogen. Data suggest that the large calanoid copepods, C. acutus and R. gigas, were in, or emerging from, a period of metabolic inactivity during the study period (November 15th – December 15th, 2017). Abundant, but decreasing lipid reserves in the predominantly herbivorous calanoid copepods, suggest these animals may have been metabolising previously stored lipids at the time of sampling, rather than deriving energy solely from the diatom bloom. This highlights the importance of understanding the timing of diapause of overwintering species as their feeding is likely to have an impact on the turnover of particulate organic matter (POM) in the upper mesopelagic. The δ15N signatures of POM became enriched with increasing depth, whereas all species of zooplankton except T. gaudichaudii did not. This suggests that animals were feeding on fresher, surface-derived POM, rather than reworked particles at depth, likely influencing the quantity and quality of organic matter leaving the upper mesopelagic. Our study highlights the complexity of mesopelagic food webs and suggests that the application of broad trophic functional types may lead to an incorrect understanding of ecosystem dynamics.

Phytoplankton-derived polysaccharides and microbial peptidoglycans are key nutrients for deep-sea microbes in the Mariana Trench

BackgroundThe deep sea represents the largest marine ecosystem, driving global-scale biogeochemical cycles. Microorganisms are the most abundant biological entities and play a vital role in the cycling of organic matter in such ecosystems. The primary food source for abyssal biota is the sedimentation of particulate organic polymers. However, our knowledge of the specific biopolymers available to deep-sea microbes remains largely incomplete. One crucial rate-limiting step in organic matter cycling is the depolymerization of particulate organic polymers facilitated by extracellular enzymes (EEs). Therefore, the investigation of active EEs and the microbes responsible for their production is a top priority to better understand the key nutrient sources for deep-sea microbes.ResultsIn this study, we conducted analyses of extracellular enzymatic activities (EEAs), metagenomics, and metatranscriptomics from seawater samples of 50–9305 m from the Mariana Trench. While a diverse array of microbial groups was identified throughout the water column, only a few exhibited high levels of transcriptional activities. Notably, microbial populations actively transcribing EE genes involved in biopolymer processing in the abyssopelagic (4700 m) and hadopelagic zones (9305 m) were primarily associated with the class Actinobacteria. These microbes actively transcribed genes coding for enzymes such as cutinase, laccase, and xyloglucanase which are capable of degrading phytoplankton polysaccharides as well as GH23 peptidoglycan lyases and M23 peptidases which have the capacity to break down peptidoglycan. Consequently, corresponding enzyme activities including glycosidases, esterase, and peptidases can be detected in the deep ocean. Furthermore, cell-specific EEAs increased at 9305 m compared to 4700 m, indicating extracellular enzymes play a more significant role in nutrient cycling in the deeper regions of the Mariana Trench.ConclusionsTranscriptomic analyses have shed light on the predominant microbial population actively participating in organic matter cycling in the deep-sea environment of the Mariana Trench. The categories of active EEs suggest that the complex phytoplankton polysaccharides (e.g., cutin, lignin, and hemicellulose) and microbial peptidoglycans serve as the primary nutrient sources available to deep-sea microbes. The high cell-specific EEA observed in the hadal zone underscores the robust polymer-degrading capacities of hadal microbes even in the face of the challenging conditions they encounter in this extreme environment. These findings provide valuable new insights into the sources of nutrition, the key microbes, and the EEs crucial for biopolymer degradation in the deep seawater of the Mariana Trench.6w3UcpMmGbcStWK5zJqVACVideo

Polyester microfiber impacts on coastal sediment organic matter consumption

As plastic pollution continues to accumulate at the seafloor, concerns around benthic ecosystem functionality heightens. This research demonstrates the systematic effects of polyester microfibers on seafloor organic matter consumption rates, an important benthic ecosystem function connected to multiple reactions and processes. We used a field-based assay to measure the loss of organic matter, both with and without polyester microfiber contamination. We identified sediment organic matter content, mud content, and mean grain size as the main drivers of organic matter consumption, however, polyester microfiber contamination decoupled ecosystem relationships and altered observed organic matter cycling dynamics. Organic matter consumption rates varied across horizontal and vertical spaces, highlighting that consumption and associated plastic effects are dependent on environmental heterogeneity at both small (within sites) and larger (between sites) scales. Our results emphasize the important role habitat heterogeneity plays in seafloor organic matter consumption and the associated effects of plastic pollution on ecosystem function.

Implikasi Keputusan Tata Usaha Negara Persetujuan Peningkatan Produksi Kontrak Karya dalam Penegakan Keadilan pada Peradilan Tata Usaha Negara

Environmental pollution occurs when the cycle of matter in the living environment changes so that the balance in terms of structure and function is disturbed. Imbalances in the structure and function of the material cycle occur due to natural processes or also due to human actions. In this modern age, there are many human activities or actions to fulfill biological needs and technological needs, thus causing a lot of environmental pollution. If there is a problem regarding environmental destruction or damage to the environment, it is almost certain that human activity is the main cause. The research method used is the Normative Juridical research type, in accordance with the objectives the author wants to achieve, the methodology in designing the thesis research uses two types of approaches, namely the Statutory Approach and the Conceptual Approach. The Statute Approach is an approach carried out by examining all laws with the concept of law. The implications of the state administration's decision to approve increased production of work contracts, provisions containing the principle of absolute responsibility, cannot yet be implemented, considering that Article 21 of Law No. 23 of 1997 concerning Environmental Management with implementing regulations that have not been made has resulted in lawsuits in environmental cases. in courts requesting the application of the principle of absolute responsibility is often not accepted. Enforcement of environmental law through civil procedures is regulated in Chapter either based on an agreement between the parties or using the services of a mediator and/or arbitrator. A lawsuit via litigation (court action) can only be pursued if efforts to resolve the dispute outside of court are unsuccessful.

Implikasi Keputusan Tata Usaha Negara Persetujuan Peningkatan Produksi Kontrak Karya dalam Penegakan Keadilan pada Peradilan Tata Usaha Negara

Environmental pollution occurs when the cycle of matter in the living environment changes so that the balance in terms of structure and function is disturbed. Imbalances in the structure and function of the material cycle occur due to natural processes or also due to human actions. In this modern age, there are many human activities or actions to fulfill biological needs and technological needs, thus causing a lot of environmental pollution. If there is a problem regarding environmental destruction or damage to the environment, it is almost certain that human activity is the main cause.The research method used is the Normative Juridical research type, in accordance with the objectives the author wants to achieve, the methodology in designing the thesis research uses two types of approaches, namely the Statutory Approach and the Conceptual Approach. The Statute Approach is an approach carried out by examining all laws with the concept of law. The implications of the state administration's decision to approve increased production of work contracts, provisions containing the principle of absolute responsibility, cannot yet be implemented, considering that Article 21 of Law No. 23 of 1997 concerning Environmental Management with implementing regulations that have not been made has resulted in lawsuits in environmental cases. in courts requesting the application of the principle of absolute responsibility is often not accepted.Enforcement of environmental law through civil procedures is regulated in Chapter either based on an agreement between the parties or using the services of a mediator and/or arbitrator. A lawsuit via litigation (court action) can only be pursued if efforts to resolve the dispute outside of court are unsuccessful.

The magnetic field in the Flame nebula

Context.Star formation drives the evolution of galaxies and the cycling of matter between different phases of the interstellar medium and stars. The support of interstellar clouds against gravitational collapse by magnetic fields has been proposed as a possible explanation for the low observed star formation efficiency in galaxies and the Milky Way. ThePlancksatellite provided the first all-sky map of the magnetic field geometry in the diffuse interstellar medium on angular scales of 5–15′. However, higher spatial resolution observations are required to understand the transition from diffuse, subcritical gas to dense, gravitationally unstable filaments.Aims.NGC 2024, also known as the Flame nebula, is located in the nearby Orion B molecular cloud. It contains a young, expanding HIIregion and a dense supercritical filament. This filament harbors embedded protostellar objects and is likely not supported by the magnetic field against gravitational collapse. Therefore, NGC 2024 provides an excellent opportunity to study the role of magnetic fields in the formation, evolution, and collapse of dense filaments, the dynamics of young HIIregions, and the effects of mechanical and radiative feedback from massive stars on the surrounding molecular gas.Methods.We combined new 154 and 216 μm dust polarization measurements carried out using the HAWC+ instrument aboard SOFIA with molecular line observations of12CN(1−0) and HCO+(1−0) from the IRAM 30-m telescope to determine the magnetic field geometry, and to estimate the plane of the sky magnetic field strength across the NGC 2024 HIIregion and the surrounding molecular cloud.Results.The HAWC+ observations show an ordered magnetic field geometry in NGC 2024 that follows the morphology of the expanding HIIregion and the direction of the main dense filament. The derived plane of the sky magnetic field strength is moderate, ranging from 30 to 80 μG. The strongest magnetic field is found at the eastern edge of the HIIregion, characterized by the highest gas densities and molecular line widths. In contrast, the weakest field is found toward the main, dense filament in NGC 2024.Conclusions.We find that the magnetic field has a non-negligible influence on the gas stability at the edges of the expanding HIIshell (gas impacted by stellar feedback) and the filament (site of current star formation).

The Combined Effects of Ocean Acidification and Respiration on Habitat Suitability for Marine Calcifiers Along the West Coast of North America

AbstractThe California Current Ecosystem (CCE) is a natural laboratory for studying the chemical and ecological impacts of ocean acidification. Biogeochemical variability in the region is due primarily to wind‐driven near‐shore upwelling of cold waters that are rich in re‐mineralized carbon and poor in oxygen. The coastal regions are exposed to surface waters with increasing concentrations of anthropogenic CO2 (Canth) from exchanges with the atmosphere and the shoreward transport and mixing of upwelled water. The upwelling drives intense cycling of organic matter that is created through photosynthesis in the surface ocean and degraded through biological respiration in subsurface habitats. We used an extended multiple linear‐regression approach to determine the spatial and temporal concentrations of Canth and respired carbon (Cbio) in the CCE based on cruise data from 2007, 2011, 2012, 2013, 2016, and 2021. Over the region, the Canth accumulation rate increased from 0.8 ± 0.1 μmol kg−1 yr−1 in the northern latitudes to 1.1 ± 0.1 μmol kg−1 yr−1 further south. The rates decreased to values of about ∼0.3 μmol kg−1 yr−1 at depths near 300 m. These accumulation rates at the surface correspond to total pH decreases that averaged about 0.002 yr‐1; whereas, decreases in aragonite saturation state ranged from 0.006 to 0.011 yr‐1. The impact of the Canth uptake was to decrease the amount of oxygen consumption required to cross critical biological thresholds (i.e., calcification, dissolution) for marine calcifiers and are significantly lower in the recent cruises than in the pre‐industrial period because of the addition of Canth.

More than food: Why restoring the cycle of organic matter in sustainable plant production is essential for the One Health nexus

Abstract One Health professes that the health of organisms is interconnected through the exploitation of planetary resources, trade, and transportation, in particular. The impetus for the emergence of this concept in the early 2000s was knowledge of the epidemiology of zoonotic diseases that put humans at risk to diseases carried by animals. In spite of the intended comprehensiveness of One Health, the place of plant health in this concept is vague, and few issues about plant health are debated in the scientific literature related to One Health. Here, we explore the history of concepts related to One Health in an attempt to understand why there is this schism between the plant sciences and the medical and veterinary sciences beyond the prism of zoonotic diseases. We illustrate the rich history of concepts in the plant sciences concerning the oneness of plants, animals and humans, and the debates about the definition and scope of sustainability that are precursors to One Health. These concepts continue to be foundations for research and development, particularly for food security and food safety. The emergence of these concepts from plant sciences was based on fundamental understanding of the food web – where plants are food for humans and animals whose digestive processes create important resources for plant growth and health. Yet, this latter part of the food web – recycling of manures in particular – was ruptured during modernization of agriculture. We explain how attaining sustainable One Health depends on restoring this part of the food web via soil stewardship, whose principal guarantors are the ensemble of actors in plant production.

Constraining activity and growth substrate of fungal decomposers via assimilation patterns of inorganic carbon and water into lipid biomarkers.

Fungi are among the few organisms on the planet that can metabolize recalcitrant carbon (C) but are also known to access recently produced plant photosynthate. Therefore, improved quantification of growth and substrate utilization by different fungal ecotypes will help to define the rates and controls of fungal production, the cycling of soil organic matter, and thus the C storage and CO2 buffering capacity in soil ecosystems. This pure-culture study of fungal isolates combined a dual stable isotope probing (SIP) approach, together with rapid analysis by tandem pyrolysis-gas chromatography-isotope ratio mass spectrometry to determine the patterns of water-derived hydrogen (H) and inorganic C assimilated into lipid biomarkers of heterotrophic fungi as a function of C substrate. The water H assimilation factor (αW) and the inorganic C assimilation into C18:2 fatty acid isolated from five fungal species growing on glucose was lower (0.62% ± 0.01% and 4.7% ± 1.6%, respectively) than for species grown on glutamic acid (0.90% ± 0.02% and 7.4% ± 3.7%, respectively). Furthermore, the assimilation ratio (RIC/αW) for growth on glucose and glutamic acid can distinguish between these two metabolic modes. This dual-SIP assay thus delivers estimates of fungal activity and may help to delineate the predominant substrates that are respired among a matrix of compounds found in natural environments.IMPORTANCEFungal decomposers play important roles in food webs and nutrient cycling because they can feed on both labile and more recalcitrant forms of carbon. This study developed and applied a dual stable isotope assay (13C-dissolved inorganic carbon/2H) to improve the investigation of fungal activity in the environment. By determining the incorporation patterns of hydrogen and carbon into fungal lipids, this assay delivers estimates of fungal activity and the different metabolic pathways that they employ in ecological and environmental systems.

Uncovering the role of oxygen on organic carbon cycling: insights from a continuous culture study with a facultative anaerobic bacterioplankton species (Shewanella baltica)

Deoxygenation is tied to organic carbon (Corg) supply and utilization in marine systems. Under oxygen-depletion, bacteria maintain Corg respiration using alternative electron acceptors such as nitrate. Since anaerobic respiration’s energy yield is lower, Corg remineralization may be reduced and its residence time increased. We investigated the influence of oxygen and alternative electron acceptors’ availability on Corg cycling by heterotrophic bacteria during a continuous culture experiment with Shewanella baltica, a facultative anaerobic γ-Proteobacteria in the Baltic Sea. We tested six different oxygen levels, from suboxic (&amp;lt;5 µmol L-1) to fully oxic conditions, using a brackish (salinity=14 g L-1) media supplied with high (HighN) or low (LowN) inorganic nitrogen concentrations relative to glucose as labile Corg source. Our results show that suboxia limited DOC (glucose) uptake and cell growth only under LowN, while higher availability of alternative electron acceptors seemingly compensated oxygen limitation under HighN. N-loss was observed under suboxia in both nitrogen treatments. Under HighN, N-loss was highest and a C:N loss ratio of ~2.0 indicated that Corg was remineralized via denitrification. Under LowN, the C:N loss ratio under suboxia was higher (~5.5), suggesting the dominance of other anaerobic respiration pathways, such as dissimilatory nitrate reduction to ammonium (DNRA). Bacterial growth efficiency was independent of oxygen concentration but higher under LowN (34 ± 3.0%) than HighN (26 ± 1.6%). Oxygen concentration also affected dissolved organic matter (DOM) cycling. Under oxic conditions, the release of dissolved combined carbohydrates was enhanced, and the amino acid-based degradation index (DI) pointed to more diagenetically altered DOM. Our results suggest bacterial Corg uptake in low-oxygen systems dominated by S. baltica can be limited by oxygen but compensated by high nitrate availability. Hence, suboxia diminishes Corg remineralisation only when alternative electron acceptors are lacking. Under high nitrate:Corg supply, denitrification leads to a higher N:C loss ratio, potentially counteracting eutrophication in the long run. Low nitrate:Corg supply may favour other anaerobic respiration pathways like DNRA, which sustains labile nitrogen in the system, potentially intensifying the cycle of eutrophication. Going forward, it will be crucial to establish the validity of our findings for S. baltica in natural systems with diverse organic substrates and microbial consortia.

Rich microbial and depolymerising diversity in Antarctic krill gut.

With almost a quadrillion individuals, the Antarctic krill processes five million tons of organic carbon every day during austral summer. This high carbon flux requires a broad range of hydrolytic enzymes to decompose the diverse food-derived biopolymers. While krill itself possesses numerous such enzymes, it is unclear, to what extent the endogenous microbiota contribute to the hydrolytic potential of the gut environment. Here we applied amplicon sequencing, shotgun metagenomics, cultivation, and physiological assays to characterize the krill gut microbiota. The broad bacterial diversity (273 families, 919 genera, and 2,309 species) also included a complex potentially anaerobic sub-community. Plate-based assays with 198 isolated pure cultures revealed widespread capacities to utilize lipids (e.g., tributyrin), followed by proteins (casein) and to a lesser extent by polysaccharides (e.g., alginate and chitin). While most isolates affiliated with the genera Pseudoalteromonas and Psychrobacter, also Rubritalea spp. (Verrucomicrobia) were observed. The krill gut microbiota growing on marine broth agar plates possess 13,012 predicted hydrolyses; 15-fold more than previously predicted from a transcriptome-proteome compendium of krill. Cultivation-independent and -dependent approaches indicated members of the families Flavobacteriaceae and Pseudoalteromonadaceae to dominate the capacities for lipid/protein hydrolysis and to provide a plethora of carbohydrate-active enzymes, sulfatases, and laminarin- or porphyrin-depolymerizing hydrolases. Notably, also the potential to hydrolyze plastics such as polyethylene terephthalate and polylactatide was observed, affiliating mostly with Moraxellaceae. Overall, this study shows extensive microbial diversity in the krill gut, and suggests that the microbiota likely play a significant role in the nutrient acquisition of the krill by enriching its hydrolytic enzyme repertoire.IMPORTANCEThe Antarctic krill (Euphausia superba) is a keystone species of the Antarctic marine food web, connecting the productivity of phyto- and zooplankton with the nutrition of the higher trophic levels. Accordingly, krill significantly contributes to biomass turnover, requiring the decomposition of seasonally varying plankton-derived biopolymers. This study highlights the likely role of the krill gut microbiota in this ecosystem function by revealing the great number of diverse hydrolases that microbes contribute to the krill gut environment. The here resolved repertoire of hydrolytic enzymes could contribute to the overall nutritional resilience of krill and to the general organic matter cycling under changing environmental conditions in the Antarctic sea water. Furthermore, the krill gut microbiome could serve as a valuable resource of cold-adapted hydrolytic enzymes for diverse biotechnological applications.

Influence of the Keystone Grazer, Sesarma reticulatum, on the Hydrology and Organic Matter Cycling in Salt Marshes of the Southeastern USA

AbstractIn salt marshes of the Southeastern USA, purple marsh crabs (Sesarma reticulatum), hereafter Sesarma, aggregate in grazing and burrowing fronts at the heads of tidal creeks, accelerating creek incision into marsh platforms. We explored the effects of this keystone grazer and sediment engineer on salt marsh sediment accumulation, hydrology, and carbon (C) and nitrogen (N) turnover using radionuclides (210Pb and 7Be), total hydrolyzable amino acids (THAA), and C and N stable isotopes (δ13C and δ15N) in sediment from paired Sesarma-grazed and un-grazed creeks. Sesarma-grazed-creek sediments exhibited greater bioturbation and tidal inundation compared to sediments in un-grazed creeks, as indicated by larger 210Pb and 7Be inventories. Total organic carbon (TOC) to total nitrogen (TN) weight ratios (C:N) were higher and δ15N values were lower in grazed-creek sediments than in un-grazed-creek sediments, suggesting Sesarma remove and assimilate N in their tissues, and excrete N with lower δ15N values into sediments. In support of this inference, the percent total carbon (TC) and percent TOC declined by nearly half, percent TN decreased by ~ 80%, and the C:N ratio exhibited a ~ threefold increase between Sesarma fore-gut and hind-gut contents. An estimated 91% of Sesarma’s diet was derived from Spartina alterniflora, the region’s dominant salt marsh plant. We found that, as Sesarma grazing fronts progress across marsh landscapes, they enhance the decay of Spartina-derived organic matter and prolong marsh tidal inundation. These findings highlight the need to better account for the effects of keystone grazers and sediment engineers, like Sesarma, in estimates of the stability and size of blue C stores in coastal wetlands.

Microbial-explicit processes and refined perennial plant traits improve modeled ecosystem carbon dynamics

Globally, soils hold approximately half of ecosystem carbon and can serve as a source or sink depending on climate, vegetation, management, and disturbance regimes. Understanding how soil carbon dynamics are influenced by these factors is essential to evaluate proposed natural climate solutions and policy regarding net ecosystem carbon balance. Soil microbes play a key role in both carbon fluxes and stabilization. However, biogeochemical models often do not specifically address microbial-explicit processes. Here, we incorporated microbial-explicit processes into the DayCent biogeochemical model to better represent large perennial grasses and mechanisms of soil carbon formation and stabilization. We also take advantage of recent model improvements to better represent perennial grass structural complexity and life-history traits. Specifically, this study focuses on: 1) a plant sub-model that represents perennial phenology and more refined plant chemistry with downstream implications for soil organic matter (SOM) cycling though litter inputs, 2) live and dead soil microbe pools that influence routing of carbon to physically protected and unprotected pools, 3) Michaelis-Menten kinetics rather than first-order kinetics in the soil decomposition calculations, and 4) feedbacks between decomposition and live microbial pools. We evaluated the performance of the plant sub-model and two SOM cycling sub-models, Michaelis-Menten (MM) and first-order (FO), using observations of net ecosystem production, ecosystem respiration, soil respiration, microbial biomass, and soil carbon from long-term bioenergy research plots in the mid-western United States. The MM sub-model represented seasonal dynamics of soil carbon fluxes better than the FO sub-model which consistently overestimated winter soil respiration. While both SOM sub-models were similarly calibrated to total, physically protected, and physically unprotected soil carbon measurements, the models differed in future soil carbon response to disturbance and climate, most notably in the protected pools. Adding microbial-explicit mechanisms of soil processes to ecosystem models will improve model predictions of ecosystem carbon balances but more data and research are necessary to validate disturbance and climate change responses and soil pool allocation.