Abstract Eighty-four species of blue-green algae were recorded from the intertidal zone of the Gulf of Elat (Aqaba) and four hypersaline coastal pools. Heterocystous forms (sixteen) were restricted to the intertidal, although significant rates of nitrogen fixation (acetylene reduction) were measured in non-heterocystous communities in coastal pools. Species distribution, the colour and surface morphology of thick mats are determined by salinity, frequency of wetting and desiccation. Distinct horizontal zonation patterns occur in coastal pools. Coccoid and non-filamentous forms such as Entophysalis and Pleurocapsa grow associated with gypsum crusts around the periphery of the pools, while filamentous forms (Lyngbya, Microcoleus) become abundant towards the central regions. Complex stratification is apparent in many communities. In different coastal pools mat communities have a similar structure; Lyngbya aestuarii and pennate diatoms at the surface, then coccoid blue-green algae (Aphanorhece, Synechococcus)...