Negative Ionization Mass Spectrometry Research Articles

Coupling field and laboratory measurements to estimate the emission factors of identified and unidentified trace gases for prescribed fires

Abstract. An extensive program of experiments focused on biomass burning emissions began with a laboratory phase in which vegetative fuels commonly consumed in prescribed fires were collected in the southeastern and southwestern US and burned in a series of 71 fires at the US Forest Service Fire Sciences Laboratory in Missoula, Montana. The particulate matter (PM2.5) emissions were measured by gravimetric filter sampling with subsequent analysis for elemental carbon (EC), organic carbon (OC), and 38 elements. The trace gas emissions were measured by an open-path Fourier transform infrared (OP-FTIR) spectrometer, proton-transfer-reaction mass spectrometry (PTR-MS), proton-transfer ion-trap mass spectrometry (PIT-MS), negative-ion proton-transfer chemical-ionization mass spectrometry (NI-PT-CIMS), and gas chromatography with MS detection (GC-MS). 204 trace gas species (mostly non-methane organic compounds (NMOC)) were identified and quantified with the above instruments. Many of the 182 species quantified by the GC-MS have rarely, if ever, been measured in smoke before. An additional 153 significant peaks in the unit mass resolution mass spectra were quantified, but either could not be identified or most of the signal at that molecular mass was unaccounted for by identifiable species. In a second, "field" phase of this program, airborne and ground-based measurements were made of the emissions from prescribed fires that were mostly located in the same land management units where the fuels for the lab fires were collected. A broad variety, but smaller number of species (21 trace gas species and PM2.5) was measured on 14 fires in chaparral and oak savanna in the southwestern US, as well as pine forest understory in the southeastern US and Sierra Nevada mountains of California. The field measurements of emission factors (EF) are useful both for modeling and to examine the representativeness of our lab fire EF. The lab EF/field EF ratio for the pine understory fuels was not statistically different from one, on average. However, our lab EF for "smoldering compounds" emitted from the semiarid shrubland fuels should likely be increased by a factor of ~2.7 to better represent field fires. Based on the lab/field comparison, we present emission factors for 357 pyrogenic species (including unidentified species) for 4 broad fuel types: pine understory, semiarid shrublands, coniferous canopy, and organic soil. To our knowledge this is the most comprehensive measurement of biomass burning emissions to date and it should enable improved representation of smoke composition in atmospheric models. The results support a recent estimate of global NMOC emissions from biomass burning that is much higher than widely used estimates and they provide important insights into the nature of smoke. 31–72% of the mass of gas-phase NMOC species was attributed to species that we could not identify. These unidentified species are not represented in most models, but some provision should be made for the fact that they will react in the atmosphere. In addition, the total mass of gas-phase NMOC divided by the mass of co-emitted PM2.5 averaged about three (range ~2.0–8.7). About 35–64% of the NMOC were likely semivolatile or of intermediate volatility. Thus, the gas-phase NMOC represent a large reservoir of potential precursors for secondary formation of ozone and organic aerosol. For the single lab fire in organic soil about 28% of the emitted carbon was present as gas-phase NMOC and ~72% of the mass of these NMOC was unidentified, highlighting the need to learn more about the emissions from smoldering organic soils. The mass ratio of total NMOC to "NOx as NO" ranged from 11 to 267, indicating that NOx-limited O3 production would be common in evolving biomass burning plumes. The fuel consumption per unit area was 7.0 ± 2.3 Mg ha−1 and 7.7 ± 3.7 Mg ha−1 for pine-understory and semiarid shrubland prescribed fires, respectively.

Determination of Dechlorane compounds in aqueous samples using ultrasound-assisted dispersive liquid–liquid microextraction and gas chromatography-electron-capture negative ion-mass spectrometry

A simple and solvent-minimized procedure for the rapid determination of chlorinated flame retardants, Dechlorane compounds: syn- and anti-Dechlorane Plus (syn- and anti-DP), Dechlorane (Dec) 602, Dec 603 and Dec 604, in aqueous samples is described. The method involves the use of ultrasound-assisted dispersive liquid–liquid microextraction (UA-DLLME) prior to their determination by gas chromatography-electron-capture negative ion-mass spectrometry (GC-ECNI-MS) operating in the selected-ion-monitoring (SIM) mode. The parameters affecting the extraction efficiency of analytes from water samples were systematically investigated. The best extraction conditions involved the rapid injection of a mixture of 1.0 mL of acetonitrile (as a dispersant) and 60 μL of carbon tetrachloride (as an extractant) into 10 mL of water sample containing 0.5 g of sodium chloride in a conical bottom glass tube. After ultrasonication for 1.0 min and centrifugation at 5000 rpm (5 min), the volume of the sedimented phase was adjusted to 20 μL and the analytes were then determined by GC-ECNI-MS analysis. The limits of quantitation (LOQs) ranged from 0.08 to 0.3 ng L−1. The precision for these analytes, as indicated by relative standard deviations (RSDs), was less than 9% for both intra- and inter-day analyses. Accuracy, expressed as the mean extraction recovery, was between 75 and 92%. A preliminary result revealed that trace levels of Dechlorane compounds were detected in various water samples with total concentrations ranging from 0.6 to 0.9 ng L−1.

Biomolecular analysis and cancer diagnostics by negative mode probe electrospray ionization

We have examined several combinations of solvents and probes with the aim of optimizing the ionization conditions for biomolecules e.g., proteins, peptides and lipids by negative mode probe electrospray ionization mass spectrometry (PESI-MS). With the data presented in this study, negative-mode PESI-MS can be considered as a potential tool for biomolecular analysis and cancer diagnostics because of its simplicity in instrumental configuration. A sharper sampling probe was found to be better for obtaining high quality mass spectra because it can generate stable electrospray without the occurrence of gas breakdown. Although the best conditions may depend on each sample, aqueous organic solvent solutions, especially isopropanol-H(2)O (1/1) with a pH of ≥7, are shown to be preferable for negative-mode PESI-MS, which was successfully applied to colon cancer diagnosis.

Sample pretreatment optimization for the analysis of short chain chlorinated paraffins in soil with gas chromatography–electron capture negative ion-mass spectrometry

Accurately quantifying short chain chlorinated paraffins (SCCPs) in soil samples with gas chromatograph coupled with electron capture negative ionization mass spectrometry (GC–ECNI-MS) is difficult because many other polychlorinated pollutants are present in the sample matrices. These pollutants (e.g., polychlorinated biphenyls (PCBs), organochlorine pesticides (OCPs) and toxaphene) can cause serious interferences during SCCPs analysis with GC–MS. Four main columns packed with different adsorbents, including silica gel, Florisil and alumina, were investigated in this study to determine their performance for separating interfering pollutants from SCCPs. These experimental results suggest that the optimum cleanup procedure uses a silica gel column and a multilayer silica gel–Florisil composite column. This procedure completely separated 22 PCB congeners, 23 OCPs and three toxaphene congeners from SCCPs. However, p,p′-DDD, cis-nonachlor and o,p′-DDD were not completely removed and only 53% of the total toxaphene was removed. This optimized method was successfully and effectively applied for removing interfering pollutants from real soil samples. SCCPs in 17 soil samples from different land use areas within a suburban region were analyzed with the established method. The concentrations of SCCPs in these samples were between 7 and 541ngg−1 (mean: 84ngg−1). Similar homologue SCCPs patterns were observed between the soil samples collected from different land use areas. In addition, lower chlorinated (Cl6/7) C10- and C11- SCCPs were the dominant congeners.

The effect of co-occurring polychlorinated biphenyls on quantitation of toxaphene in fish tissue samples by gas chromatography negative ion mass spectrometry

Determinative methods based on gas chromatography-negative chemical ionization mass spectrometry (GC–NCI/MS) provide improved sensitivity and specificity for toxaphene in environmental samples, but are subject to misidentification due to oxygen reaction in the presence of polychlorinated biphenyls (PCBs). The goal of this study was to quantify the impact of co-occurring PCBs in fish tissue samples when utilizing single quadrupole instruments to implement this method. Mixtures of PCB congeners and technical toxaphene, and extracts of fish tissue with varying concentrations of PCBs were analyzed for individual congener and total toxaphene concentrations by GC–NCI/MS. The contribution of co-injected PCB 204 ranged from 23% to 88% of the total peak area for the Cl-9 toxaphene homolog quantitation ion, a contribution that increased as the ratio of technical toxaphene to PCB 204 decreased. PCB interferences in fish tissue extracts, including a standard reference material, were subtracted using a three-step procedure featuring spectral analysis of isotopic patterns for target peaks. Total toxaphene concentrations without PCB subtraction in three fish tissue samples with low, intermediate and high co-occurring PCBs were overestimated by 33, 55 and 745%, respectively, underscoring the need for practical strategies to account for PCB interferences in GC–NCI/MS based protocols. In contrast, no appreciable interference or resulting positive bias in concentrations was observed for quantitation of eight common toxaphene residue congeners.

Anomalously long‐lived molecular negative ions of duroquinone

The problem under investigation here is establishment of mechanisms of the resonant electron capture by molecules, using the example of duroquinone (2,3,5,6-tetramethyl-1,4-benzoquinone). A solution is important because it will provide new insights into the fundamental physical laws and widespread applications in various fields like molecular nanoelectronics, touched upon herein too. Resonant electron capture (REC) in duroquinone was studied with negative ion mass spectrometry of the REC as the main method, and UV absorption and the photoelectron spectroscopy as the auxiliary ones. The latter were used to study the electronic structures of the various neutral molecular states that are the parent ones for the negative molecular ions formed by electron attachment to the molecules. B3LYP/6-311 + G(d,p) calculations were widely used throughout the study. As a result, an intensive peak of the negative molecular ions with anomalously high lifetime (200 microseconds) was registered at the attached electron energy of 1.8 eV. The ions were determined to be quartets delaying the electron autodetachment because of spin prohibition and appearing via inter-system crossing from the negative molecular ion doublets produced in the core-excited Feshbach resonances. Finally, the pattern of the REC in duroquinone was obtained for the energy region of 1-4 eV which is presented by shape resonances, core-excited Feshbach resonances and by mechanisms little-known for molecules of inter-shell resonances and the formation of ion quartets. The latter were proposed to be related to the negative differential resistance in molecular nanoelectronics.

Analysis of Lipids: Metal Oxide Laser Ionization Mass Spectrometry

Matrix-assisted laser desorption/ionization mass spectrometry (MALDI-MS) has been used for lipid analysis; however, one of the drawbacks of this technique is matrix interference peaks at low masses. Metal oxide surfaces are described here for direct, matrix-free analysis of small (MW < 1000 Da) lipid compounds, without interferences in the resulting spectra from traditional matrix background peaks. Spectra from lipid standards produced protonated and sodiated molecular ions. More complex mixtures including vegetable oil shortening and lipid extracts from bacterial and algal sources provided similar results. Mechanistic insight into the mode of ionization from surface spectroscopy, negative ion mass spectrometry, and stable isotope studies is also presented. The metal oxide system is compared to other reported matrix-free systems.

Simultaneous quantification of Polyphyllin D and Paris H, two potential antitumor active components in Paris polyphylla by liquid chromatography–tandem mass spectrometry and the application to pharmacokinetics in rats

Polyphyllin D and Paris H are two potential antitumor active components in Paris polyphylla, one of the Traditional Chinese Medicines (TCMs). The present study details the development and validation of a rapid, sensitive and accurate LC–ESI-MS/MS method for the separation and simultaneous determination of Polyphyllin D and Paris H in rat plasma using Ginsenoside Rh2 as the internal standard (IS). A simple protein precipitation method was used for the preparation of plasma sample. Chromatographic separation was successfully achieved on an Agilent Zorbax C18 column using a step gradient program with the mobile phase of 10mmol/L aqueous ammonium acetate and acetonitrile. Both analytes were detected by negative mode electrospray ionization mass spectrometry. Selected reaction monitoring (SRM) was applied for all monitored analytes. This method demonstrated good linearity and did not show any endogenous interference. The lower limits of quantification (LLOQs) of Polyphyllin D and Paris H were both 1.0ng/mL using 100μL rat plasma. The average recoveries of Polyphyllin D and Paris H from rat plasma were both above 80%. The inter-day precisions (%RSD) of both analytes determined in five days were all below 15%. The developed and validated method has been successfully applied in the simultaneous quantification and pharmacokinetic studies of Polyphyllin D and Paris H in rats.

Tandem Mass Spectrometry of Heparan Sulfate Negative Ions: Sulfate Loss Patterns and Chemical Modification Methods for Improvement of Product Ion Profiles

Heparan sulfate (HS) is a polysaccharide modified with sulfation, acetylation, and epimerization that enable its binding with protein ligands and regulation of important biological processes. Tandem mass spectrometry has been employed to sequence linear biomolecules e.g., proteins and peptides. However, its application in structural characterization of HS is limited due to the neutral loss of sulfate (SO(3)) during collisional induced dissociation (CID). In this report, we studied the dissociation patterns of HS disaccharides and demonstrate that the N-sulfate (N-S) bond is especially facile during CID. We identified factors that influence the propensities of such losses from precursor ions and proposed a Free Proton Index (FPI) to help select ions that are able to produce meaningful backbone dissociations. We then investigated the thermodynamics and kinetics of SO(3) loss from sulfates that are protonated, deprotonated, and metal-adducted using density functional theory computations. The calculations showed that sulfate loss from a protonated site was much more facile than that from a deprotonated or metal-adducted site. Further, the loss of SO(3) from N-sulfate was energetically favored by 3-8 kcal/mol in transition states relative to O-sulfates, making it more prone to this process by a substantial factor. In order to reduce the FPI, representing the number of labile sulfates in HS native chains and oligosaccharides, we developed a series of chemical modifications to selectively replace the N-sulfates of the glucosamine with deuterated acetyl group. These modifications effectively reduced the sulfate density on the HS oligosaccharides and generated considerably more backbone dissociation using on-line LC/tandem MS.

Separation and identification of smokeless gunpowder additives by capillary electrochromatography

This paper details a method for the separation and identification of fourteen organic compounds commonly found as constituents in commercial smokeless powders using a hexyl acrylate-based porous monolith. Capillary electrochromatography (CEC) coupled to UV and time of flight-mass spectrometry (TOF-MS) methods were both explored. The CEC–UV method provides an effective and efficient method for the detection of all components in the additive package of the powder. The TOF-MS procedure provides better sensitivity and selectivity allowing an additional confirmation of the presence of the subset of those compounds, which are detectable via positive and/or negative ion electrospray ionization mass spectrometry. Both methods were used for the analysis of smokeless powder components in a mixed standard as well as in the determination of the composition of the additive package of individual powders.

Negative Ion Mass Spectral Fragmentation of N-Alkoxycarbonyl-1-Aminoarylmethyl Phosphonic Monoesters under Electrospray Ionization Conditions

The negative ion mass spectrometry of N-benzyloxycarbonyl and N-ethoxycarbonyl 1-aminoarylmethylphosphonic methyl, ethyl, and phenyl monoesters was investigated under electrospray ionization conditions. Their fragmentation pathways are proposed and supported by collisional activated dissociation product-ion spectrometry. All of the deprotonated molecules preferentially eliminate a molecule of benzyl alcohol or ethanol first to yield isocyanato-alkylphosphonate anions, which further generate phosphonate ions by the loss of carbon monoxide, phenol or alcohol, carbon monoxide plus arenes. The isocyanato-sulfonate anions can further cyclize to generate 3-aryl-2-phenoxy-1,2,4-oxaphosphazolidine-2,5-dione amide anions, which can undergo rearrangements by the loss of carbon dioxide, metaphosphorous acid phenyl ester, or carbon dioxide plus metaphosphorous acid phenyl ester, respectively, to give rise to nitrogen-containing anions. The title compounds show an obviously different fragmentation in the negative ion mode from that in the positive ion mode under the electrospray ionization conditions.

The role of ion‐bound cluster formation in negative ion mass spectrometry

The ionization mechanisms operative in negative ion atmospheric pressure mass spectrometry are far from being properly understood. In an excess of oxygen superoxide (O(2)(-)) is generally the primary charge-carrying species that is generated. However, subsequent reactions leading to the finally detected ion signals remain obscure. Since adiabatic expansion induced cluster growth and collision-induced dissociation (CID) processes rendered a representative sampling of ion distributions present in the source difficult, a custom-built thermally sampling time-of-flight mass spectrometer was used for the investigations. Using atmospheric pressure laser ionization of toluene as the reagent gas, high yields of thermal electrons were observed, but only negligible amounts of by-products. Ab initio calculations for individual ion/molecule reaction pathways were performed. Electron capture by molecular oxygen resulted in the formation of subsequent superoxide water clusters as well as distinct analyte-adduct ions. By adjusting the extent of CID within the ion optical stages of the mass spectrometer, the cluster distribution changes to smaller cluster sizes and the analyte signals strongly shifted towards M(-) or [M-H](-). The observed superoxide water cluster distribution was close to thermal. The theoretical results confirmed the experimental findings. In negative atmospheric pressure mass spectrometry the water concentration in the ion source (determining the ionization efficiency) and the CID energy provided through electrical fields (determining the ion distribution) are primary, critical parameters for the observed overall ionization mechanism and efficiency.

Simultaneous quantification of free and glucuronidated cannabinoids in human urine by liquid chromatography tandem mass spectrometry

BackgroundCannabis is the most commonly abused drug of abuse and is commonly quantified during urine drug testing. We are conducting a controlled drug administration study investigating efficacy of urinary cannabinoid glucuronide metabolites for documenting recency of cannabis intake and for determining stability of urinary cannabinoids. MethodsA liquid chromatography tandem mass spectrometry method was developed and validated quantifying Δ9-tetrahydrocannabinol (THC), 11-hydroxy-THC (11-OH-THC), 11-nor-9-carboxy-THC (THCCOOH), cannabidiol, cannabinol, THC-glucuronide and THCCOOH-glucuronide in 0.5ml human urine via supported-liquid extraction. Chromatography was performed on an Ultra Biphenyl column with a gradient of 10mmol/l ammonium acetate, pH 6.15 and 15% methanol in acetonitrile at 0.4ml/min. Analytes were monitored by positive and negative mode electrospray ionization and multiple reaction monitoring mass spectrometry. ResultsLinear ranges were 0.5–50ng/ml for THC-glucuronide, 1–100ng/ml for THCCOOH, 11-OH-THC and cannabidiol, 2–100ng/ml for THC and cannabinol, and 5–500ng/ml for THCCOOH-glucuronide (R2>0.99). Mean extraction efficiencies were 34–73% with analytical recovery (bias) 80.5–118.0% and total imprecision 3.0–10.2% coefficient of variation. ConclusionThis method simultaneously quantifies urinary cannabinoids and phase II glucuronide metabolites, and enables evaluation of urinary cannabinoid glucuronides for documenting recency of cannabis intake and cannabinoid stability. The assay is applicable for routine urine cannabinoid testing.

Sequence analysis of the sulfated rhamno-oligosaccharides derived from a sulfated rhamnan

Three sulfated rhamno-oligosaccharides, designated O1, O2 and O3, were obtained by mild acid hydrolysis of the sulfated rhamnan and purified by gel-permeation chromatography. On the basis of one- and two-dimensional nuclear magnetic resonance (1D, 2D NMR) spectroscopic analyses, the oligosaccharide O1 was characterized to be α-l-Rhap-(2SO4)-(1→3)-α-l-Rhap. The fragmentation pattern of the homogeneous disaccharide in the product ion spectra was recognized by negative-ion electrospray tandem mass spectrometry with collision-induced dissociation (ES-CID MS/MS). With the principles established, the sequences of the oligosaccharides O2 and O3 were deduced to be α-l-Rhap-(2SO4)-(1→3)-α-l-Rhap-(1→3)-α-l-Rhap, and α-l-Rhap-(2SO4)-(1→3)-α-l-Rhap-(1→3)-α-l-Rhap-(1→3)-α-l-Rhap (2SO4), respectively. The investigation demonstrated that the sulfated rhamnan-derived oligosaccharides were novel sulfated oligosaccharides different from those of other polysaccharides-degraded from algae, and it could be possible to determine the sequence of the sulfated rhamno-oligosaccharides directly from the glycosidic cleavage fragmentation in the product ion spectra.

Desulfurization of phosphorothioate oligonucleotides via the sulfur‐by‐oxygen replacement induced by the hydroxyl radical during negative electrospray ionization mass spectrometry

While the occurrence of desulfurization of phosphorothioate oligonucleotides in solution is well established, this study represents the first attempt to investigate the basis of the unexpected desulfurization via the net sulfur-by-oxygen (S-O) replacement during negative electrospray ionization (ESI). The current work, facilitated by quantitative mass deconvolution, demonstrates that considerable desulfurization can take place even under common negative ESI operating conditions. The extent of desulfurization is dependent on the molar phosphorothioate oligonucleotide-to-hydroxyl radical ratio, which is consistent with the corona discharge-induced origin of the hydroxyl radical leading to the S-O replacement. This hypothesis is supported by the fact that an increase of the high-performance liquid chromatography (HPLC) flow rate and the on-column concentration of a phosphorothioate oligonucleotide, as well as a decrease of the electrospray voltage reduce the degree of desulfurization. Comparative LC-tandem mass spectrometry (MS/MS) sequencing of a phosphorothioate oligonucleotide and its corresponding desulfurization product revealed evidence that the S-O replacement occurs at multiple phosphorothioate internucleotide linkage sites. In practice, the most convenient and effective strategy for minimizing this P = O artifact is to increase the LC flow rate and the on-column concentration of phosphorothioate oligonucleotides. Another approach to mitigate possible detrimental effects of the undesired desulfurization is to operate the ESI source at a very low electrospray voltage to diminish the corona discharge; however this will significantly compromise sensitivity when analyzing the low-level P = O impurities in phosphorothioate oligonucleotides.

A Negative Ion Mass Spectrometry Approach to Identify Cross-Linked Peptides Utilizing Characteristic Disulfide Fragmentations

Chemical cross-linking combined with mass spectrometry (MS) is an analytical tool used to elucidate the topologies of proteins and protein complexes. However, identification of the low abundance cross-linked peptides and modification sites amongst a large quantity of proteolytic fragments remains challenging. In this work, we present a strategy to identify cross-linked peptides by negative ion MS for the first time. This approach is based around the facile cleavages of disulfide bonds in the negative mode, and allows identification of cross-linked products based on their characteristic fragmentations. MS(3) analysis of the cross-linked peptides allows for their sequencing and identification, with residue specific location of cross-linking sites. We demonstrate the applicability of the commercially available cystine based cross-linking reagent dithiobis(succinimidyl) propionate (DSP) and identify cross-linked peptides from ubiquitin. In each instance, the characteristic fragmentation behavior of the cross-linked species is described. The data presented here indicate that this negative ion approach may be a useful tool to characterize the structures of proteins and protein complexes, and provides the basis for the development of high throughput negative ion MS chemical cross-linking strategies.

Enhanced pressurized liquid extraction technique capable of analyzing polychlorodibenzo-p-dioxins, polychlorodibenzofurans, and polychlorobiphenyls in fish tissue

A high-throughput enhanced pressurized liquid extraction technique was developed by incorporating pressurized liquid extraction and multiple cleanup techniques. USEPA methods of polychlorodibenzo-p-dioxins, polychlorodibenzofurans (PCDD/Fs) and dioxin-like polychlorobiphenyls (dl-PCBs) analysis in fish tissue include independent silica gel, florisil, alumina, and carbopack/celite column cleanup techniques following extraction. Under the improved method, fish composites (∼10g) were extracted and cleaned simultaneously using alumina (∼10g), florisil (∼10g), silica gel (∼5g), celite (∼5g), and carbopack (∼0.5g). Clean extracts were concentrated and then analyzed by high resolution gas chromatography coupled with electron capture negative ionization mass spectrometry. Carbopack/celite within the extraction cell provided the analytical separation of dl-PCBs from PCDD/Fs, reducing potential molecular interferences. The average recoveries (n=3) of dl-PCBs in dichloromethane:hexane (1:1, v/v) extracts were 93±2.4% and PCDD/Fs in toluene extracts were 85±3.0%. The developed method was applied to measure the PCDD/Fs and dl-PCBs in catfish from San Jacinto River Waste Pits, a Superfund site in Houston, TX. The dl-PCBs were measured at 5.0–17,000pgg−1 ww. Sample preparation time and solvents were reduced as much as 95% and 65%, respectively, as compared to USEPA method 1613.

Sequence determination and anticoagulant and antithrombotic activities of a novel sulfated fucan isolated from the sea cucumber Isostichopus badionotus

BackgroundThe aim is to analyze the structure, anticoagulant and antithrombotic activities of a sulfated fucan isolated from sea cucumber Isostichopus badionotus (fucan-Ib). MethodsFucan-Ib was hydrolyzed under mild acid conditions. The oligosaccharide fragments were fractionated by gel-filtration chromatography and the structures were determined by negative-ion electrospray tandem mass spectrometry with collision-induced dissociation and two-dimensional NMR. Anticoagulant activities were measured by activated partial thromboplastin, thrombin and prothrombin times, and by in vitro inhibition experiments with factors IIa and Xa. Antithrombotic activities were determined in vitro by measuring the length and weight of the thrombus generated. ResultThe linear polysaccharide sequence of fucan-Ib was deduced from the structures of its oligosaccharide fragments produced by acid hydrolysis. Under mild conditions, the glycosidic bonds between the non-sulfated and 2,4-O-disulfated fucose residues were selectively cleaved and highly ordered oligosaccharide fragments with a tetrasaccharide repeating unit [→3Fuc(2S,4S)α1→3Fuc(2S)α1→3Fuc(2S)α1→3Fucα1→]n were obtained. In in vitro assays fucan-Ib showed good anticoagulant and antithrombotic activities compared with heparin and the fucosylated chondroitin sulfate isolated from the same source (fCS-Ib). The two polysaccharides, fucan-Ib and fCS-Ib, differ in the mechanism of action; the former exhibited activity mainly by potentiation of antithrombin acted on thrombin and factor Xa whereas the latter mainly through heparin cofactor II. ConclusionFucan-Ib has a well defined structure with tetrasaccharide tandem repeats and good anticoagulant and antithrombotic activities. General importanceFucan-Ib has a well defined structure and can be readily quality-controlled, and therefore has potential therapeutic value as an affective antithrombotic drug with low risk of bleeding.

Determination of chlorinated paraffins in sediments from the Firth of Clyde by gas chromatography with electron capture negative ionisation mass spectrometry and carbon skeleton analysis by gas chromatography with flame ionisation detection

Short chain chlorinated paraffins (SCCPs) are a group of persistent organic pollutants (POPs) of increasing concern, but are to date not widely investigated in the environment, largely due to the challenges involved in their quantification. Here, SCCPs were quantified in marine sediments from the Firth of Clyde, Scotland, by gas chromatography with electron capture negative ionisation mass spectrometry (GC–ECNIMS) and through carbon skeleton analysis by gas chromatography with flame ionisation detection (GC–FID), and the analytical challenges encountered are discussed. Concentrations in the sediments ranged from 0.4 to 69μgkg−1 when determined by GC–ECNIMS, and from 5.6 to 379μgkg−1 when determined by GC–FID. For 8 out of 11 samples, analysis by GC–FID gave higher results than analysis by GC–ECNIMS. Unexpected aspects of the analysis, such as the presence of high concentrations of longer chain chlorinated paraffins in the samples, are also presented.

Chemical characterisation of humic-like substances from urban, rural and tropical biomass burning environments using liquid chromatography with UV/vis photodiode array detection and electrospray ionisation mass spectrometry

Environmental contextOne of the most important classes of water-soluble organic compounds in continental fine and tropical biomass burning aerosol is humic-like substances (HULIS), which contain components with strong polar, acidic and chromophoric properties. We focus on the chemical characterisation of HULIS and provide evidence that nitro-aromatic catecholic compounds are among the major species of HULIS. This indicates that volatile aromatic hydrocarbons emitted during biomass burning are important gas-phase precursors for HULIS. AbstractHumic-like substances (HULIS) are ubiquitously present in the troposphere and make up a major fraction of continental fine-sized water-soluble organic compounds. They are regarded as material with strong polar, acidic and chromophoric properties; however, structural information at the individual component level is rather limited. In the present study, we have characterised HULIS from different locations using liquid chromatography coupled to photodiode array detection and negative ion electrospray ionisation mass spectrometry. Aerosol samples with particles less than 2.5 μm in diameter (PM2.5) were collected in Budapest and K-puszta, Hungary, during 2007 and 2008 spring and summer periods, and in Rondônia, Brazil, during a 2002 biomass burning experiment. Major components of the Budapest 2007 and Brazil 2002 HULIS corresponded to chromophoric substances, of which 4-nitrocatechol (molecular weight (MW) 155) was identified as the most abundant organic species and less abundant ones were attributed to mono- and dimethyl nitrocatechols (MWs 169 and 183). The mass concentrations of 4-nitrocatechol in the water-soluble organic carbon (WSOC) of the Budapest 2007 and day- and night-time Brazil 2002 HULIS were 0.46, 0.50 and 1.80 %. Abundant components of K-puszta 2008 HULIS were assigned to α-pinene secondary organic aerosol (SOA) tracers, i.e. 3-methyl-1,2,3-butanetricarboxylic acid and terpenylic acid; their mass concentrations in the HULIS WSOC were 0.75 and 0.40 %. Tere- and ortho-phthalic acids (MW 166) were major components of the Budapest and K-puszta HULIS, but only minor ones of the Brazil 2002 biomass burning HULIS, consistent with a source that is different from biomass burning and likely related to open waste burning of phthalate ester-containing material such as plastic.