As the global clean energy transition accelerates, China’s mining industry faces pressing challenges concerning the sustainable consumption of clean energy minerals. This study employed the EE-MRIO model to investigate the consumption trends of clean energy minerals across various provinces and industries in China from 2012 to 2017, specifically focusing on the resource footprints of copper, nickel, molybdenum, zinc, and cobalt. Using the random forest model, we identified the driving factors, with the goal of offering a solid scientific foundation for strategic decision making. Our findings reveal marked disparities in resource footprints among provinces, which are correlated with regional industrialization, urbanization trends, and resource reserves. Beyond the traditional resource-intensive sectors, industries like finance and real estate have significantly impacted the resource footprint. Monte Carlo simulations further validated the reliability of our model. The random forest analysis indicates that population size and energy consumption mainly determine the footprints of copper and zinc. In contrast, the footprints of nickel and cobalt are primarily influenced by technology market turnover, while molybdenum’s footprint is largely driven by population size and total carbon emissions. Drawing from these insights, we suggest several policy recommendations for clean energy mineral extraction. These include fostering inter-provincial resource collaboration, bolstering geological exploration and assessment, promoting technological innovation, advancing environmentally friendly mineral extraction techniques, and enhancing collaboration between urban planning and pivotal industries.