Abstract Background Despite its interest for the development of personalised medicine, the pathophysiological distinctions between ileal and colonic Crohn’s disease (CD) have been poorly characterised. This study aims to search for immunological differences between ileal and colonic CD. Methods We reanalysed our proteomic dataset1 to extract non-exploited immunological information. Using mass spectrometry-based proteomics, we previously compared the proteome of ulcer edges and adjacent normal mucosa (paired design) in the ileum (n=16 biopsies) and colon (n=16 biopsies) of 16 CD patients (Figure 1). A total of 4,428 and 5,204 proteins were screened in the ileum and colon, respectively. To identify proteins specific to particular immune cell populations, we searched in the Human Proteome Atlas and literature. Results We identified markers specific to plasma cells (IgA1, IgM, IgG1, IgG2, IgG3, IgG4, immunoglobulin J chain [IGJ], and immunoglobulin lambda-like polypeptide 5 [IGLL5]), monocytes/macrophages (cluster of differentiation 14 [CD14]), and mast cells (chymase [CMA1], mast cell carboxypeptidase A [CPA3], and tryptase alpha/beta-1 [TPSAB1]). No specific markers were identified for the other immune cells. The number of increased plasma cell markers (ulcer edges vs adjacent normal mucosa) was higher in the ileum (IgA1, IgM, IgG1, IgG2, IgG3, IGLL5, and IGJ) than in the colon (IgG3) (Figure 2). Of note, immune exclusion markers (IgM, IgA1, IGJ) were increased in the ileum, but not the colon (ulcer edges vs adjacent normal mucosa). The marker of monocytes/macrophages CD14 was increased in the colon, but not in the ileum (ulcer edges vs adjacent normal mucosa) (Figure 2). Mast cells markers (CMA1, CPA3, and TPSAB1) showed no significant change in the ileum or colon (ulcer edges vs adjacent normal mucosa) (Figure 2). Conclusion Plasma cells and monocytes/macrophages may play distinct roles in the formation of ileal and colonic ulcers in patients with CD, suggesting further investigations.
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