Abstract Introduction: Hepatocellular carcinoma (HCC) is the second most common cause of cancer-related deaths worldwide with a 5-year survival rate of <15%. Chronic viral hepatitis, NASH, and cirrhosis are major risk factors for the HCC development. Thus, HCC represents a major public health issue worldwide. Currently, sorafenib is the only FDA-approved drug used for HCC treatment. Unfortunately, it increases patient's survival by only 3 months. Tumor stem cells (TSCs) are likely responsible for resistance to chemotherapy, relapse, and metastasis. We have demonstrated that a TSC marker, doublecortin-like kinase (DCLK1), is induced during hepatic injury, cirrhosis and HCC and its overexpression in HCC patient’s liver significantly reduces survival. Therefore, understanding of the mechanism(s) hepatic TSCs regulation is important for the development of effective therapy against HCC. Methods: Hepatoma Huh7 cells and primary human hepatocytes were infected with lentiviruses expressing recombinant RFP-DCLK1 fusion protein. The RFP-DCLK1-positive cells were isolated using FACS and subjected to immunofluorescence confocal microscopy, clonogenic assay, Western blot and xenograft in mice. Results: DCLK1-overexpressing human hepatocytes formed spheroids but not the control cells. DCLK1 overexpression induced accumulation of active β-catenin in the perinuclear and nuclear regions in Huh7 cells with concomitant increase in c-Myc. The DCLK1-negative cells lacked active β-catenin and total β-catenin was observed only in their cell membranes. Hepatic β-catenin mRNA levels were unaffected during various stages of HCC. Analysis of HCC patients’ liver tissues (n= 369) suggested that elevated DCLK1 mRNAs expression significantly correlates with increased levels of MMP2, vimentin, Zeb2, Twist1 and VEGF-C which are involved in epithelial-to-mesenchymal transition (EMT) and tumor invasion. Huh7-derived tumors also exhibited high level expression of these factors. Conclusions: These observations suggest that DCLK1 induces tumor/cancer stem cell-like properties and EMT in liver cells. DCLK1 appears to enhance active β-catenin levels and its cellular localization to the nucleus. Thus, the DCLK1 represents an important target for HCC therapy. Citation Format: Naushad Ali, Charles B. Nguyen, Parthasarathy Chandrakesan, Randal May, Danny Dhanasekaran, Michael S. Bronze, Courtney W. Houchen. A tumor stem cell marker DCLK1 promotes hepatocellular carcinoma by regulating β-catenin, EMT and clonogenic properties of hepatocytes [abstract]. In: Proceedings of the American Association for Cancer Research Annual Meeting 2017; 2017 Apr 1-5; Washington, DC. Philadelphia (PA): AACR; Cancer Res 2017;77(13 Suppl):Abstract nr 3884. doi:10.1158/1538-7445.AM2017-3884