Marine Salmon Farms Research Articles

Serological and molecular typing of Tenacibaculum maritimum from New Zealand farmed salmon, Oncorhynchus tshawytscha

Tenacibaculum maritimum is a cosmopolitan bacterial pathogen with the potential to cause significant losses in a broad range of farmed and wild marine fish species. This study investigated the antigenic diversity of T. maritimum isolated in culture from farmed Chinook (king) salmon (Oncorhynchus tshawytscha) from the Marlborough Sounds in New Zealand. A total of 36 isolates were examined using antibody serotyping and rapid molecular serotyping via multiplex PCR (mPCR) targeting genes encoding O-antigen biosynthesis enzymes. Serological analysis using three different polyclonal antisera developed against T. maritimum isolated from farmed Atlantic salmon (Salmo salar) in Tasmania, Australia revealed that there are three putative serotypes of T. maritimum that occur in New Zealand. The predominant serotype was defined by a positive reaction to all three Tasmanian antisera (antisera A, B and C), designated as serotype ABC. This serotype was found at all nine farm locations tested and represented 81% of all isolates examined. The same library of isolates was evaluated by mPCR serotyping and found three O-AGC types among tested isolates. O-AGC Type 3 was not only the predominant type (72%) present, but it also had a wide distribution, having been isolated at eight of the nine farms. Two other O-AGC types (O-AGC Type 2–1 and O-AGC Type 3–2) were identified, providing evidence of genetic variation. However, there was only partial concordance between the two serotyping techniques, which is likely linked to differences in the way serotypes are defined in the two approaches that were used. Nevertheless, in broad terms there is good evidence of intraspecific antigenic variation within our library of isolates, and collectively these data will be of crucial importance for assessing the pathogenicity of the isolates and the subsequent development of a vaccine for this emerging disease in New Zealand marine salmon farms.

Experimental challenge of Atlantic salmon Salmo salar using clones of Paramoeba perurans, P. pemaquidensis and Tetramitus sp.

Salmon gill disease in Norway is in most cases associated with a range of different pathogens, stress and environmental factors. Paramoeba perurans and other amoebae have been isolated during such disease outbreaks. Other amoebae isolated from salmon with gill disease in Norway include P. pemaquidensis, Tetramitus sp. and Vannella sp. Here we tested the pathogenicity of the first 2 species in challenge experiments. We found that even when clonal cultures of P. pemaquidensis established an infection on the gills of salmon, it failed to cause gill disease, while Tetramitus sp. appeared to be unable to establish a lasting infection on the gills of healthy salmon. The result of the challenge with P. pemaquidensis confirms the results of similar studies performed in the USA and in Australia. Tetramitus sp. is probably a common amoeba in the marine environment, and its presence on the gills of farmed salmon may just be accidental. Based on this study, we conclude that P. perurans is the only known amoeba in marine salmon farming associated with amoebic gill disease in Norway.

Not that clean: Aquaculture-mediated translocation of cleaner fish has led to hybridization on the northern edge of the species' range.

Translocation and introduction of non‐native organisms can have major impacts on local populations and ecosystems. Nevertheless, translocations are common practices in agri‐ and aquaculture. Each year, millions of wild‐caught wrasses are transported large distances to be used as cleaner fish for parasite control in marine salmon farms. Recently, it was documented that translocated cleaner fish are able to escape and reproduce with local wild populations. This is especially a challenge in Norway, which is the world's largest salmon producer. Here, a panel of 84 informative SNPs was developed to identify the presence of nonlocal corkwing wrasse (Symphodus melops) escapees and admixed individuals in wild populations in western Norway. Applying this panel to ~2000 individuals, escapees and hybrids were found to constitute up to 20% of the local population at the northern edge of the species’ distribution. The introduction of southern genetic material at the northern edge of the species distribution range has altered the local genetic composition and could obstruct local adaptation and further range expansion. Surprisingly, in other parts of the species distribution where salmon farming is also common, few escapees and hybrids were found. Why hybridization seems to be common only in the far north is discussed in the context of demographic and transport history. However, the current lack of reporting of escapes makes it difficult to evaluate possible causes for why some aquaculture‐dense areas have more escapees and hybrids than others. The results obtained in this study, and the observed high genomic divergence between the main export and import regions, puts the sustainability of mass translocation of nonlocal wild wrasse into question and suggests that the current management regime needs re‐evaluation.

Less is more: Negative relationship between biomass density and sea lice infestation in marine salmon farming

The relationship between biomass density and sea lice infestation is of particular interest in marine salmonid aquaculture. Data from a commercial fish farmer with parallel production of both organic and conventional salmon at the same site made it possible to study aspects of this relationship in a field situation. The maximum allowed biomass density for organically produced salmon is 10 kg/m3 and 25 kg/m3 for conventionally produced salmon. The focus of this study was to compare sea lice infestation on salmon in the two productions types and related biomass densities synchronously. Organic salmon had significantly higher levels of sea lice compared to salmon in conventional production. Mortality rate and growth rate were not significantly different between the production strategies.

Freshwater salmon aquaculture in Chile and transferable antimicrobial resistance.

Large amounts of antimicrobials are used in salmonid aquaculture in Chile. Most are used in marine aquaculture, but appreciable amounts are also employed in freshwater aquaculture. Much research and many publications have examined transferable antimicrobial resistance in bacteria isolated from marine salmon farms, but much less attention has been paid to this area in freshwater salmon farming. A recent paper by Domínguez et al. (2019) has as least in part remedied this situation. We now comment on some of its interpretations and have attempted to point out its areas of strength and weakness in light of the published scientific literature. Seen in this setting, the important results presented by Domínguez et al. (2019) underline the need for increased awareness of the challenge to animal and human health posed by excessive use of antimicrobials in aquaculture.

The epidemiological and economic effects from systematic depopulation of Norwegian marine salmon farms infected with pancreas disease virus

Pancreas disease (PD) is a viral disease associated with significant economic losses in Scottish, Irish, and Norwegian marine salmon aquaculture. In this paper, we investigate how disease-triggered harvest strategies (systematic depopulation of infected marine salmon farms) towards PD can affect disease dynamics and salmon producer profits in an endemic area in the southwestern part of Norway. Four different types of disease-triggered harvest strategies were evaluated over a four-year period (2011–2014), each scenario with different disease-screening procedures, timing for initiating the harvest interventions on infected cohorts, and levels of farmer compliance to the strategy. Our approach applies a spatio-temporal stochastic model for simulating the spread of PD in the separate scenarios. Results from these simulations were then used in cost-benefit analyses to estimate the net benefits of different harvest strategies over time. We find that the most aggressive strategy, in which infected farms are harvested without delay, was most efficient in terms of reducing infection pressure in the area and providing economic benefits for the studied group of salmon producers. On the other hand, lower farm compliance leads to higher infection pressure and less economic benefits. Model results further highlight trade-offs in strategies between those that primarily benefit individual producers and those that have collective benefits, suggesting a need for institutional mechanisms that address these potential tensions.

Sea lice (Lepeophtheirus salmonis and Caligus elongatus) infestation levels on sea trout (Salmo trutta L.) around the Irish Sea, an area without salmon aquaculture

Abstract Sea trout are parasitized by two species of caligid copepod sea lice, Lepeophtheirus salmonis and Caligus elongatus. Generally, levels of lice infestation are low and few adverse effects on the host have been reported. However, with the advent of marine salmon farming since the 1980s, there have been many published accounts of L. salmonis sea lice epizootics on salmonids in aquaculture areas. Few large-scale studies are available on levels of sea lice infestation of sea trout in areas without salmon farms or before their development. Understanding natural background lice levels on sea trout is important to interpret lice levels on trout in aquaculture areas. The Celtic Sea Trout Project, an INTERREG IVA Ireland Wales EU funded project, examined the status, distribution, genetics, and ecology of sea trout around the Irish Sea and provided an opportunity to assess levels of lice on sea trout spatially and temporally in an area without marine salmon farming. The prevalence of L. salmonis remained constant over the 3 years (63–69%), whereas the prevalence of C. elongatus was lower (20–40%). The mean abundance of L. salmonis ranged from 3.6 to 3.8 and that of C. elongatus ranged from 0.6 to 4.3 (n = 850). There was a significant variation in L. salmonis abundance between marine areas. However, the relative stability in the prevalence and mean intensity of both lice species observed and the low mean abundances and very small proportion of juvenile life stages of L. salmonis reported here are similar to those reported from other studies in areas without salmon farming and likely represent natural background salmon lice levels on sea trout. This 3-year study, conducted over a wide geographic area, represents one of the largest studies of sea lice infestation patterns on sea trout in an area distant from finfish aquaculture influences.

Modelling Infectious Hematopoietic Necrosis Virus Dispersion from Marine Salmon Farms in the Discovery Islands, British Columbia, Canada.

Finite volume ocean circulation and particle tracking models are used to simulate water-borne transmission of infectious hematopoietic necrosis virus (IHNV) among Atlantic salmon (Salmo salar) farms in the Discovery Islands region of British Columbia, Canada. Historical simulations for April and July 2010 are carried out to demonstrate the seasonal impact of river discharge, wind, ultra-violet (UV) radiation, and heat flux conditions on near-surface currents, viral dispersion and survival. Numerical particles released from infected farm fish in accordance with IHNV shedding rates estimated through laboratory experiments are dispersed by model oceanic flows. Viral particles are inactivated by ambient UV radiation levels and by the natural microbial community at rates derived through laboratory studies. Viral concentration maps showing temporal and spatial changes are produced and combined with lab-determined minimum infectious dosages to estimate the infective connectivity among farms. Results demonstrate that neighbouring naïve farms can become exposed to IHNV via water-borne transport from an IHNV diseased farm, with a higher risk in April than July, and that many events in the sequence of farm outbreaks in 2001-2002 are consistent with higher risks in our farm connectivity matrix. Applications to other diseases, transfers between farmed and wild fish, and the effect of vaccinations are also discussed.

Occurrence and potential transfer of mycotoxins in gilthead sea bream and Atlantic salmon by use of novel alternative feed ingredients

Plant ingredients and processed animal proteins (PAP) are suitable alternative feedstuffs for fish feeds in aquaculture practice, although their use can introduce contaminants that are not previously associated with marine salmon and gilthead sea bream farming. Mycotoxins are well known natural contaminants in plant feed material, although they also could be present on PAPs after fungi growth during storage. The present study surveyed commercially available plant ingredients (19) and PAP (19) for a wide range of mycotoxins (18) according to the EU regulations. PAP showed only minor levels of ochratoxin A and fumonisin B1 and the mycotoxin carry-over from feeds to fillets of farmed Atlantic salmon and gilthead sea bream (two main species of European aquaculture) was performed with plant ingredient based diets. Deoxynivalenol was the most prevalent mycotoxin in wheat, wheat gluten and corn gluten cereals with levels ranging from 17 to 814 and μgkg−1, followed by fumonisins in corn products (range 11.1–4901μgkg−1 for fumonisin B1+B2+B3). Overall mycotoxin levels in fish feeds reflected the feed ingredient composition and the level of contaminant in each feed ingredient. In all cases the studied ingredients and feeds showed levels of mycotoxins below maximum residue limits established by the Commission Recommendation 2006/576/EC. Following these guidelines no mycotoxin carry-over was found from feeds to edible fillets of salmonids and a typically marine fish, such as gilthead sea bream. As far we know, this is the first report of mycotoxin surveillance in farmed fish species.

Treatment rates for sea lice of Scottish inshore marine salmon farms depend on local (sea loch) farmed salmon biomass and oceanography

AEI Aquaculture Environment Interactions Contact the journal Facebook Twitter RSS Mailing List Subscribe to our mailing list via Mailchimp HomeLatest VolumeAbout the JournalEditorsTheme Sections AEI 5:117-125 (2014) - DOI: https://doi.org/10.3354/aei00099 Treatment rates for sea lice of Scottish inshore marine salmon farms depend on local (sea loch) farmed salmon biomass and oceanography Alexander G. Murray*, Malcolm Hall Marine Scotland Science Marine Laboratory, 375 Victoria Road, Aberdeen AB11 9DB, UK *Corresponding author: sandy.murray@scotland.gsi.gov.uk ABSTRACT: Sea lice are the most damaging parasite of marine-farmed salmon. Lice are controlled largely by using medicines. Discharge consents limit the allowed medicine use and hence biomass of salmon that can be farmed. The local environment may be expected to play a role in determining the frequency of application of these medicines on specific salmon farm sites. To assess this, we used data collected by the Scottish Environment Protection Agency on lice treatments and fish biomasses from 2005 to 2012 for salmon farm sites located within sea lochs (offshore sites are not included), together with local hydrographic data. There was relatively little variation in treatment rates between different sites within a loch, so a loch (or larger unit) is the appropriate area for analysis of factors influencing these treatment rates. Treatment rates tended to increase with the loch’s total biomass of farmed salmon. Dependence of treatment rate on loch flushing time was highly significant in all regions; however, dependence was positive in the Northern and Western Isles but negative in mainland Scotland. A possible explanation is flushing of lice away from island sea lochs but into mainland sea lochs, in line with prevailing currents. Regional variation in dependence suggests that oceanographic processes at larger spatial scales play a significant role in determining lice dynamics. KEY WORDS: Sea lice treatment · Generalised linear model · Salmon aquaculture Full text in pdf format PreviousNextCite this article as: Murray AG, Hall M (2014) Treatment rates for sea lice of Scottish inshore marine salmon farms depend on local (sea loch) farmed salmon biomass and oceanography. Aquacult Environ Interact 5:117-125. https://doi.org/10.3354/aei00099 Export citation RSS - Facebook - Tweet - linkedIn Cited by Published in AEI Vol. 5, No. 2. Online publication date: May 20, 2014 Print ISSN: 1869-215X; Online ISSN: 1869-7534 Copyright © 2014 Inter-Research.

A game theory based framework for assessing incentives for local area collaboration with an application to Scottish salmon farming

Movements of water that transport pathogens mean that in net-pen aquaculture diseases are often most effectively managed collaboratively among neighbours. Such area management is widely and explicitly applied for pathogen management in marine salmon farms. Effective area management requires the active support of farm managers and a simple game-theory based framework was developed to identify the conditions required under which collaboration is perceived to be in their own best interest. The model applied is based on area management as practiced for Scottish salmon farms, but its simplicity allows it to be generalised to other area-managed net-pen aquaculture systems. In this model managers choose between purchasing tested pathogen-free fish or cheaper, untested fish that might carry pathogens. Perceived pay-off depends on degree of confidence that neighbours will not buy untested fish, risking input of pathogens that spread between farms. For a given level of risk, confidence in neighbours is most important in control of moderate-impact moderate-probability diseases. Common low-impact diseases require high confidence since there is a high probability a neighbour will import, while testing for rare high-impact diseases may be cost-effective regardless of neighbours actions. In some cases testing may be beneficial at an area level, even if all individual farms are better off not testing. Higher confidence is required for areas with many farms and so focusing management on smaller, epidemiologically imperfect, areas may be more effective. The confidence required for collaboration can be enhanced by the development of formal agreements and the involvement of outside disinterested parties such as trade bodies or government.

Clinical manifestations of pancreas disease outbreaks in Norwegian marine salmon farming – variations due to salmonid alphavirus subtype

Pancreas disease (PD) in Norwegian salmonid aquaculture has traditionally been caused by salmonid alphavirus (SAV) subtype 3. Following the isolation of a novel SAV subtype in 2010, marine SAV2, two separate endemic areas have developed. It has been debated whether disease outbreaks due to marine SAV2 result in milder clinical manifestations compared to outbreaks caused by SAV3. The aim of this study was to descriptively investigate site-level differences in the clinical manifestations of marine SAV2 and SAV3 at Norwegian seawater sites diagnosed with PD in 2012. The findings suggest that Norwegian PD outbreaks caused by marine SAV2 result in lower mortality and milder clinical signs compared to outbreaks caused by SAV3. For sites without reported PD-related mortality, there was no difference in the mortality levels between sites infected by marine SAV2 and SAV3. The results also indicate that there are no differences in grading quality at slaughter between the SAV subtypes.

Fish Processing Facilities: New Challenge to Marine Biosecurity in Canada

The transmission of pathogens is a common consequence of animal food production. Marine salmon farms and their processing facilities can serve as sources of virulent fish pathogens; our study is the first to confirm the broadcast of a live fish pathogen from a farmed salmon processing facility into the marine waters of Canada's Pacific coast. We found live salmon lice Lepeophtheirus salmonis, mucus, and fish tissue in effluent from the processing facility. Sea lice transmitted from this source may pose a threat to wild salmon populations, and the release of untreated offal, including blood water, is of considerable concern. Further research is needed to quantify the extent to which processing facilities release sea lice and to determine whether more virulent fish pathogens are present in effluent. These data underscore the need for fish farming nations to develop mandatory biosecurity programs to ensure that farmed salmon processing facilities will prevent the broadcast of infectious fish pathogens into wild fish habitat.

Space-Time Modelling of the Spread of Salmon Lice between and within Norwegian Marine Salmon Farms

Parasitic salmon lice are potentially harmful to salmonid hosts and farm produced lice pose a threat to wild salmonids. To control salmon lice infections in Norwegian salmonid farming, numbers of lice are regularly counted and lice abundance is reported from all salmonid farms every month. We have developed a stochastic space-time model where monthly lice abundance is modelled simultaneously for all farms. The set of farms is regarded as a network where the degree of contact between farms depends on their seaway distance. The expected lice abundance at each farm is modelled as a function of i) lice abundance in previous months at the same farm, ii) at neighbourhood farms, and iii) other, unspecified sources. In addition, the model includes explanatory variables such as seawater temperature and farm-numbers of fish. The model gives insight into factors that affect salmon lice abundance and contributing sources of infection. New findings in this study were that 66% of the expected salmon lice abundance was attributed to infection within farms, 28% was attributed to infection from neighbourhood farms and 6% to non-specified sources of infection. Furthermore, we present the relative risk of infection between neighbourhood farms as a function of seaway distance, which can be viewed as a between farm transmission kernel for salmon lice. The present modelling framework lays the foundation for development of future scenario simulation tools for examining the spread and abundance of salmon lice on farmed salmonids under different control regimes.

Transmission dynamics of pancreas disease (PD) in a Norwegian fjord: aspects of water transport, contact networks and infection pressure among salmon farms

Pancreas disease (PD) in marine salmon farming is caused by salmon pancreas disease virus (SPDV). Virus survival, infection pressure and contact networks among farms influence the potential of PD to spread. The present study aims to explore contact networks and infection pressure and their ability to explain transmission dynamics of PD in a Norwegian fjord. In this study, we included all records of PD by subtype 3 (SPDV3) in the study population from the first reported in August 2006 to the last reported in November 2009. Using logistic regression analyses, we found that contact network by water transport explained better transmission of PD than contact networks defined by ownership or close distance to infected farms. Hydrodynamic modelling can be a valuable tool to forecast the spread of PD and thereby take actions to reduce the transmission. Knowing the risk of getting infected, it is important to avoid water transport from infected farms when new cohorts are transferred to sea water, and to have conscious control regarding management operations between farms.

Gill disorders in marine-farmed salmon: investigating the role of hydrozoan jellyfish

AEI Aquaculture Environment Interactions Contact the journal Facebook Twitter RSS Mailing List Subscribe to our mailing list via Mailchimp HomeLatest VolumeAbout the JournalEditorsTheme Sections AEI 1:245-257 (2011) - DOI: https://doi.org/10.3354/aei00024 Gill disorders in marine-farmed salmon: ­investigating the role of hydrozoan jellyfish Emily J. Baxter1,2,*, Hamish D. Rodger3, Rob McAllen2, Thomas K. Doyle1 1Coastal and Marine Research Centre, Environmental Research Institute, University College Cork, Naval Base, Haulbowline, Cork, Ireland 2Department of Zoology, Ecology and Plant Science, School of Biological, Earth and Environmental Sciences, University College Cork, Distillery Fields, North Mall, Cork, Ireland 3Vet-Aqua International, Oranmore Business Park, Oranmore, Co. Galway, Ireland *Email: e.baxter@gmx.com ABSTRACT: Jellyfish have been implicitly linked to a number of fish kill events in marine-farmed finfish over recent decades. However, due to insufficient data, it is difficult to identify small hydrozoan jellyfish as the causative agents of the more common and chronic problem of gill disorders. Gill disorders (physical, pathogenic or parasitic damage to the gills) can be caused by a number of waterborne agents and are an increasing though poorly understood problem for the aquaculture industry. Hence, the first year-long monitoring programme to study hydrozoan jellyfish, other gelatinous zooplankton, phytoplankton and fish health was initiated at 2 aquaculture sites on the west coast of Ireland. At the southern site, 2 jellyfish species previously implicated in aquaculture fish kill events (Muggiaea atlantica and Solmaris corona) occurred at high abundances (combined density of ~450 jellyfish m–3, an order of magnitude lower than during previous mass mortality events). The fish at this site exhibited clinically significant gill damage throughout the peak in jellyfish abundance. Analyses revealed a significant positive correlation between daily fish mortality and the abundance of these jellyfish but not with any other factors. At the northern site, there were low abundances of jellyfish; nevertheless, gill damage due to the protozoan parasite Trichodina sp. was observed over a shorter time period. As the European aquaculture sector experiences annual economic losses due to gill disorders, these findings raise concerns for the expected growth of the industry, especially as ­jellyfish populations are predicted to increase in some areas. Therefore, mitigation methods need to be developed and implemented. KEY WORDS: Aquaculture · Gelatinous zooplankton · Siphonophores · Hydromedusae · Atlantic salmon · Fish kills Full text in pdf format PreviousNextCite this article as: Baxter EJ, Rodger HD, McAllen R, Doyle TK (2011) Gill disorders in marine-farmed salmon: ­investigating the role of hydrozoan jellyfish. Aquacult Environ Interact 1:245-257. https://doi.org/10.3354/aei00024 Export citation RSS - Facebook - Tweet - linkedIn Cited by Published in AEI Vol. 1, No. 3. Online publication date: June 10, 2011 Print ISSN: 1869-215X; Online ISSN: 1869-7534 Copyright © 2011 Inter-Research.

Gill disease in marine farmed Atlantic salmon at four farms in Ireland

A study of four marine salmon farms was undertaken in Ireland in 2008, with a focus on gill health and disease. All four farms suffered severe gill disease resulting in...

Gill Damage to Atlantic Salmon (Salmo salar) Caused by the Common Jellyfish (Aurelia aurita) under Experimental Challenge

BackgroundOver recent decades jellyfish have caused fish kill events and recurrent gill problems in marine-farmed salmonids. Common jellyfish (Aurelia spp.) are among the most cosmopolitan jellyfish species in the oceans, with populations increasing in many coastal areas. The negative interaction between jellyfish and fish in aquaculture remains a poorly studied area of science. Thus, a recent fish mortality event in Ireland, involving Aurelia aurita, spurred an investigation into the effects of this jellyfish on marine-farmed salmon.Methodology/Principal FindingsTo address the in vivo impact of the common jellyfish (A. aurita) on salmonids, we exposed Atlantic salmon (Salmo salar) smolts to macerated A. aurita for 10 hrs under experimental challenge. Gill tissues of control and experimental treatment groups were scored with a system that rated the damage between 0 and 21 using a range of primary and secondary parameters. Our results revealed that A. aurita rapidly and extensively damaged the gills of S. salar, with the pathogenesis of the disorder progressing even after the jellyfish were removed. After only 2 hrs of exposure, significant multi-focal damage to gill tissues was apparent. The nature and extent of the damage increased up to 48 hrs from the start of the challenge. Although the gills remained extensively damaged at 3 wks from the start of the challenge trial, shortening of the gill lamellae and organisation of the cells indicated an attempt to repair the damage suffered.ConclusionsOur findings clearly demonstrate that A. aurita can cause severe gill problems in marine-farmed fish. With aquaculture predicted to expand worldwide and evidence suggesting that jellyfish populations are increasing in some areas, this threat to aquaculture is of rising concern as significant losses due to jellyfish could be expected to increase in the future.

Sea louse infection of juvenile sockeye salmon in relation to marine salmon farms on Canada's west coast.

BackgroundPathogens are growing threats to wildlife. The rapid growth of marine salmon farms over the past two decades has increased host abundance for pathogenic sea lice in coastal waters, and wild juvenile salmon swimming past farms are frequently infected with lice. Here we report the first investigation of the potential role of salmon farms in transmitting sea lice to juvenile sockeye salmon (Oncorhynchus nerka).Methodology/Principal FindingsWe used genetic analyses to determine the origin of sockeye from Canada's two most important salmon rivers, the Fraser and Skeena; Fraser sockeye migrate through a region with salmon farms, and Skeena sockeye do not. We compared lice levels between Fraser and Skeena juvenile sockeye, and within the salmon farm region we compared lice levels on wild fish either before or after migration past farms. We matched the latter data on wild juveniles with sea lice data concurrently gathered on farms. Fraser River sockeye migrating through a region with salmon farms hosted an order of magnitude more sea lice than Skeena River populations, where there are no farms. Lice abundances on juvenile sockeye in the salmon farm region were substantially higher downstream of farms than upstream of farms for the two common species of lice: Caligus clemensi and Lepeophtheirus salmonis, and changes in their proportions between two years matched changes on the fish farms. Mixed-effects models show that position relative to salmon farms best explained C. clemensi abundance on sockeye, while migration year combined with position relative to salmon farms and temperature was one of two top models to explain L. salmonis abundance.Conclusions/SignificanceThis is the first study to demonstrate a potential role of salmon farms in sea lice transmission to juvenile sockeye salmon during their critical early marine migration. Moreover, it demonstrates a major migration corridor past farms for sockeye that originated in the Fraser River, a complex of populations that are the subject of conservation concern.

Epidemiological observations of pancreas disease of farmed Atlantic salmon, Salmo salar L., in Ireland

Epidemiological investigations into the pancreas disease (PD) of farmed salmon were conducted on populations of Atlantic salmon reared in Ireland during 2003 and 2004. The investigations surveyed all marine salmon farms operating in Ireland through a detailed questionnaire with follow-up farm visits. Information was gathered on 21 populations of fish in 2003 and 14 populations in 2004. Thirteen of the 21 populations suffered PD in 2003 and 12 of the 14 in 2004. The mean mortality due to PD on affected farms was 18.8% in 2003 and 14.8% in 2004 and the loss of growth due to PD was estimated at 11.4% over the 2-year period. The highest risk periods for outbreaks of PD were early summer and early autumn and the farms most seriously affected by PD mortality were in the western counties of Ireland. Factors which showed an indication of association with a PD outbreak or high mortality during a PD outbreak were: livestock movement to another sea site, high feeding rate prior to any PD outbreak, the presence of another PD positive farm in the same water body, greater than 250000 fish on a site, a previous history of PD on a site, a high sea lice burden, and sites located in the western regions of Ireland which reared a specific strain of salmon.