Ocean Carbon Cycle Research Articles

The role of biota in the Southern Ocean carbon cycle

The role of biota in the Southern Ocean carbon cycle

The Global Distribution of Grazing Dynamics Estimated From Inverse Modeling

AbstractGrazing dynamics are one of the most poorly constrained components of the marine carbon cycle. We use inverse modeling to infer the distribution of community‐integrated zooplankton grazing dynamics based on the ability of different grazing formulations to recreate the satellite‐observed seasonal cycle in phytoplankton biomass after controlling for physical and bottom‐up controls. We find large spatial variability in the optimal community‐integrated half saturation concentration for grazing (K1/2), with lower (higher) values required in more oligotrophic (eutrophic) biomes. This leads to a strong sigmoidal relationship between observed mean‐annual phytoplankton biomass and the optimally inferred grazing parameterization. This relationship can be used to help constrain, validate and/or parameterize next‐generation biogeochemical models.

Comparative molecular dynamics simulations provided insights into the mechanisms of cold-adaption of alginate lyases from the PL7 family.

Alginate is an important polysaccharide that is abundant in the marine environments, including the Polar Regions, and bacterial alginate lyases play key roles in its degradation. Many reported alginate lyases show characteristics of cold-adapted enzymes, including relatively low temperature optimum of activities (Topt) and low thermal stabilities. However, the cold-adaption mechanisms of alginate lyases remain unclear. Here, we studied the cold-adaptation mechanisms of alginate lyases by comparing four members of the PL7 family from different environments: AlyC3 from the Arctic ocean (Psychromonas sp. C-3), AlyA1 from the temperate ocean (Zobellia galactanivorans), PA1167 from the human pathogen (Pseudomonas aeruginosa PAO1), and AlyQ from the tropic ocean (Persicobacter sp. CCB-QB2). Sequence comparison and comparative molecular dynamics (MD) simulations revealed two main strategies of cold adaptation. First, the Arctic AlyC3 and temperate AlyA1 increased the flexibility of the loops close to the catalytic center by introducing insertions at these loops. Second, the Arctic AlyC3 increased the electrostatic attractions with the negatively charged substrate by introducing a high portion of positively charged lysine at three of the insertions mentioned above. Furthermore, our study also revealed that the root mean square fluctuation (RMSF) increased greatly when the temperature was increased to Topt or higher, suggesting the RMSF increase temperature as a potential indicator of the cold adaptation level of the PL7 family. This study provided new insights into the cold-adaptation mechanisms of bacterial alginate lyases and the marine carbon cycling at low temperatures.

Molecular composition and characteristics of Sediment-adsorbed Dissolved Organic Matter (SDOM) along the coast of China

Sediment-adsorbed Dissolved Organic Matter (SDOM) in coast plays a crucial role in the terrestrial and marine carbon cycle processes of the global environment. However, understanding the transport dynamics of SDOM along the coast of China, particularly its interactions with sediments, remains elusive. In this study, we analyzed the δ13C and δ15N stable isotopic compositions, as well as the molecular characteristics of SDOM collected from coastal areas spanning the Bohai Sea (BS), Yellow Sea (YS), East China Sea (ECS), and South China Sea (SCS), by using isotope ratio mass spectrometry and Fourier Transform Ion Cyclotron Resonance Mass Spectrometry (FT-ICR-MS). We identified the predominant sources of carbon and nitrogen in coastal sediments, revealing terrigenous origins for most C and N, while anthropogenic sources dominated in the SCS. Spatial variations in SDOM chemodiversity were observed, with diverse molecular components influenced by distinct environmental factors and sediment sources. Notably, lignins and saturated compounds (such as proteins/amino sugars) were the predominant molecular compounds detected in coastal SDOM. Through Mantel tests and Spearman's correlation analysis, we elucidated the significant influence of spatial environmental factors (temperature, DO, salinity, and depth) and sediment sources on SDOM molecular chemodiversity. These findings contribute to a more comprehensive understanding of the carbon cycle dynamics along the Chinese coast.

Assessing transient changes in the ocean carbon cycle during the last deglaciation through carbon isotope modeling

Abstract. Atmospheric carbon dioxide concentration (pCO2) has increased by approximately 80 ppm from the Last Glacial Maximum (LGM) to the early Holocene. The change in this atmospheric greenhouse gas is recognized as a climate system response to gradual change in insolation. Previous modeling studies suggested that the deglacial increase in atmospheric pCO2 is primarily attributed to the release of CO2 from the ocean. Additionally, it has been suggested that abrupt change in the Atlantic meridional overturning circulation (AMOC) and associated interhemispheric climate changes are involved in the release of CO2. However, understanding remains limited regarding oceanic circulation changes and the factors responsible for changes in chemical tracers in the ocean during the last deglaciation and their impact on atmospheric pCO2. In this study, we investigate the evolution of the ocean carbon cycle during the last deglaciation (21 to 11 ka BP) using three-dimensional ocean fields from the transient simulation of the MIROC 4m climate model, which exhibits abrupt AMOC changes similar to those observed in reconstructions. We investigate the reliability of simulated changes in the ocean carbon cycle by comparing the simulated carbon isotope ratios with sediment core data, and we examine potential biases and overlooked or underestimated processes in the model. Qualitatively, the modeled changes in atmospheric pCO2 are consistent with ice core records. For example, during Heinrich Stadial 1 (HS1), atmospheric pCO2 increases by 10.2 ppm, followed by a reduction of 7.0 ppm during the Bølling–Allerød (BA) period and then by an increase of 6.8 ppm during the Younger Dryas (YD) period. However, the model underestimates the changes in atmospheric pCO2 during these events compared to values derived from ice core data. Radiocarbon and stable isotope signatures (Δ14C and δ13C) indicate that the model underestimates both the activated deep-ocean ventilation and reduced efficiency of biological carbon export in the Southern Ocean and the active ventilation in the North Pacific Intermediate Water (NPIW) during HS1. The relatively small changes in simulated atmospheric pCO2 during HS1 might be attributable to these underestimations of ocean circulation variation. The changes in Δ14C associated with strengthening and weakening of the AMOC during the BA and YD periods are generally consistent with values derived from sediment core records. However, although the data indicate continuous increase in δ13C in the deep ocean throughout the YD period, the model shows the opposite trend. It suggests that the model either simulates excessive weakening of the AMOC during the YD period or has limited representation of geochemical processes, including marine ecosystem response and terrestrial carbon storage. Decomposing the factors behind the changes in ocean pCO2 reveals that variations in temperature and alkalinity have the greatest impact on change in atmospheric pCO2. Compensation for the effects of temperature and alkalinity suggests that the AMOC changes and the associated bipolar climate changes contribute to the decrease in atmospheric pCO2 during the BA and the increase in atmospheric pCO2 during the YD period.

Intraspecific trait variation modulates the temperature effect on elemental quotas and stoichiometry in marine Synechococcus.

Diverse phytoplankton modulate the coupling between the ocean carbon and nutrient cycles through life-history traits such as cell size, elemental quotas, and ratios. Biodiversity is mostly considered at broad functional levels, but major phytoplankton lineages are themselves highly diverse. As an example, Synechococcus is found in nearly all ocean regions, and we demonstrate contains extensive intraspecific variation. Here, we grew four closely related Synechococcus isolates in serially transferred cultures across a range of temperatures (16-25°C) to quantify for the relative role of intraspecific trait variation vs. environmental change. We report differences in cell size (p<0.01) as a function of strain and clade (p<0.01). The carbon (QC), nitrogen (QN), and phosphorus (QP) cell quotas all increased with cell size. Furthermore, cell size has an inverse relationship to growth rate. Within our experimental design, temperature alone had a weak physiological effect on cell quota and elemental ratios. Instead, we find systemic intraspecific variance of C:N:P, with cell size and N:P having an inverse relationship. Our results suggest a key role for intraspecific life history traits in determining elemental quotas and stoichiometry. Thus, the extensive biodiversity harbored within many lineages may modulate the impact of environmental change on ocean biogeochemical cycles.

Two-decade satellite observations reveal variability in size-fractionated phytoplankton primary production in the South China Sea

Understanding variations in marine phytoplankton primary production (PP) is crucial for assessing the response of the marine environment to climate change and for quantifying the ocean carbon cycle. However, the spatiotemporal variability of size-fractionated PP in the South China Sea (SCS) remains ambiguous. Our study investigated the monthly, seasonal, and inter-annual variability of size-fractionated PP in the SCS using satellite observations from 2002 to 2022. There were noticeable seasonal and monthly variations in size-fractionated PP, with notably high PP values appearing during the cold season. The disparities in distribution and the distinct fluctuation patterns between size-fractionated PP suggest that total PP alone is not a comprehensive indicator of marine ecosystem health. Over the past two decades in the SCS, there were more pronounced decreases in total, pico-, and nano-PP, whereas micro-PP displayed no significant trend. The most pronounced decline occurred in the northern SCS, contrasted by increases in coastal areas. These size-fractionated PP anomalies showed strong correlations with climate change indices, highlighting the impact of environmental factors on these anomalies, such as sea surface temperature, mixed layer depth, and wind speed. Our findings emphasize the importance considering size-fractionated PP to gain a more nuanced understanding of the ocean carbon cycle and the marine ecosystem's response to climate changes.

Effect of the antibiotic tetracycline on structural-functional characteristics of coccolithophore Chrysotila sp. and the degree of its calcification

Coccolithophorids play a fundamental role in the marine carbon cycle, fixing inorganic carbon during photosynthesis and exporting CO2 during calcification. In the presented study, the toxic effect of tetracycline on coccolithophorids of Chrysotila sp. was evaluated and the possibility of removing the antibiotic from water using this microalga was investigated. Tetracycline at a concentration of 1–15 mg L−1 had no effect on the growth of Chrysotila sp. and at higher values (20–25 mg L−1) it stimulated the growth of the algae. As the concentration of tetracycline increased, a tendency to decrease the percentage of coccolith-covered cells in the culture was observed. At the same time, the growth of Chrysotila sp. was realized mainly at the expense of uncovered coccoliths cells, the number of covered cells changed insignificantly. Coccolith- covered and uncovered Chrysotila sp. cells showed different physiological responses to antibiotic addition. Calcified cells are more sensitive to tetracycline, which is expressed in an increase in their size and a decrease in granularity, a decrease in specific chlorophyll fluorescence and enzymatic (esterase) activity, and an increase in the production of reactive oxygen species. Reduction of cell calcification under exposure to pollutants is potentially dangerous by changes in the biogeochemical cycle of nutrient elements in the aquatic ecosystem.It is shown that the main mechanism of tetracycline removal from water is photodegradation. However, in the presence of Chrysotila sp. the rate of tetracycline degradation is significantly higher (by 7–15%) than in samples without algae.

Grazing by nano- and microzooplankton on heterotrophic picoplankton dominates the biological carbon cycling around the Western Antarctic Peninsula

Over the past 40 years, the significance of microzooplankton grazing in oceanic carbon cycling has been highlighted with the help of dilution experiments. The ecologically relevant Western Antarctic Peninsula (WAP) ecosystem in the Southern Ocean (SO), however, has not been well studied. Here we present data from dilution experiments, performed at three stations around the northern tip of the WAP to determine grazing rates of small zooplankton (hetero- and mixotrophic members of the 0.2–200 µm size fraction, SZP) on auto- and heterotrophic members of the < 200 µm plankton community as well as their gross growth. While variable impacts of SZP grazing on carbon cycling were measured, particulate organic carbon, not the traditionally used parameter chlorophyll a, provided the best interpretable results. Our results suggested that heterotrophic picoplankton played a significant role in the carbon turnover at all stations. Finally, a comparison of two stations with diverging characteristics highlights that SZP grazing eliminated 56–119% of gross particulate organic carbon production from the particulate fraction. Thus, SZP grazing eliminated 20–50 times more carbon from the particulate fraction compared to what was exported to depth, therefore significantly affecting the efficiency of the biological carbon pump at these SO sites.

Millennial‐Scale Carbon Flux Variability in the Subantarctic Pacific During Marine Isotope Stage 3 (57–29 ka)

AbstractAntarctic ice cores reveal a glacial climate state during Marine Isotope Stage 3 (MIS‐3; 57–29 ka) punctuated by millennial‐scale warming events and pulses of CO2. This study further explores how changes in Southern Ocean carbon cycling contributed to these millennial‐scale fluctuations in climate. Evidence from South Atlantic sediment cores suggests that warming events were associated with decreased dust‐borne iron flux, reduced export production, and increased upwelling from the deep Southern Ocean (SO). These processes are considered to have contributed to rising atmospheric CO2 during periods of rapid warming. Here we investigate whether the same processes occurred in the southwest Pacific sector of the SO at TAN1106‐28. We show that reduced New Zealand glaciation and localized iron limitation in the southwest Pacific led to reduced export production during millennial‐scale warming events. Decreases in foraminifera‐bound δ15N during all MIS‐3 warming events may reflect increased nutrient supply by upwelling. Increased calcium carbonate flux during MIS‐3 warming events likely reflects coccolithophore production in response to sea surface temperatures, which, would increase carbonate counter pump strength and reduce CO2 sequestration. Concomitant decreases in bottom water oxygen, inferred from redox‐sensitive U and Mn sediment concentrations, and increases in the 14C age of deep waters, suggest that old, nutrient‐rich waters influenced southwest Pacific middepth waters during warming events. This signature may reflect an expansion of Pacific Deep Water into the SO during warming. Taken together, our multi‐proxy data set reveals that the southwest subantarctic Pacific acted as a source of CO2 during millennial‐scale warming events of MIS‐3.

Far-field effects of the Nile damming on the silica cycle in the Southeastern Mediterranean Sea

Silica plays a key role in the growth of silicifying primary producers (e.g., diatoms) and hence the ocean carbon pump. The Mediterranean Sea's eastern Levantine Basin (ELB) is a low silica (and low N and P) ultra-oligotrophic basin. Before 1965, Nile autumn floods were a major source of dissolved silica (DSi) and other nutrients to primary producers of the ELB continental shelf, also known as the Nilotic cell. The construction of the Aswan High Dam (AHD) in the mid-1960s, blocked these floods, drastically diminishing the autumn-diatom blooms offshore the Nile delta. However, the far-reaching and long-lasting effects of the Nile damming on the Si cycle in the ELB remain unclear. Here, we studied the changes in DSi in the surface water offshore Israel and the distribution of biogenic silica in deep-sea short sediment cores, collected hundreds of kilometers from the Nile outlet, at depths range of 1100–1900 m, offshore the ELB Israeli coast. We show post dam reduction and termination in flood related seasonality of DSi and a concurrent decrease (of up to 79 %) in biogenic silica (BSi) accumulation rates in surficial sediments relative to underlying sediments. These changes reflect the effects of Si (dissolved and particulate) retention by the AHD on diatoms production, export and burial in the ELB. This far-field effect was demonstrated in deep-sea areas subjected to intense lateral transport of resuspended sediments from the shelf via intermediate nepheloid layers and to coastal water intrusions, along the path of the pre-dam, flood plumes. Our core records show that the AHD worsened nutrient-diminished, exceptionally unfavorable conditions for diatoms that persisted in the deep ELB at least during the last four millennia.

Impact of high temperature heat waves on ocean carbon sinks: Based on literature analysis perspective

The Earth's oceans serve as vast heat storage reservoirs and the ocean currents, forming a heat transfer zone, act as a buffer for climate change. The oceans play a crucial role in the water cycle, carbon cycle, and nitrogen cycle, interacting with the atmosphere. However, the increasing occurrence of heatwaves in recent years has disrupted the stability of the oceans and affected their function as a global thermostat. This paper examines relevant literature from the Web of Science database spanning from 1996 to 2023. Our analysis reveals the evolving research hotspots regarding the impact of heatwaves on ocean carbon sinks, progressing from “carbon dioxide - carbon emissions - ocean - seawater - organic matter - marine sediment” over the past decades. Keyword frequency and centrality analysis indicate a deepening focus in this field of study. The research areas primarily revolve around climate change, carbon dioxide, ocean variability, the influence of high temperatures on the carbon cycle, the weakening of the ocean carbon sink function, and ocean temperature. This study summarizes research findings on the mechanisms by which high temperature heatwaves affect ocean carbon sinks, alterations in ocean carbon cycle patterns, their impacts on marine ecosystems, and factors influencing seawater temperature and heatwave occurrence. Finally, the paper discusses novel findings in this field and proposes countermeasures to enhance ocean sink capacity amidst the warming trend.

Global and regional temperature change over the past 4.5 million years.

Much of our understanding of Cenozoic climate is based on the record of δ18O measured in benthic foraminifera. However, this measurement reflects a combined signal of global temperature and sea level, thus preventing a clear understanding of the interactions and feedbacks of the climate system in causing global temperature change. Our new reconstruction of temperature change over the past 4.5 million years includes two phases of long-term cooling, with the second phase of accelerated cooling during the Middle Pleistocene Transition (1.5 to 0.9 million years ago) being accompanied by a transition from dominant 41,000-year low-amplitude periodicity to dominant 100,000-year high-amplitude periodicity. Changes in the rates of long-term cooling and variability are consistent with changes in the carbon cycle driven initially by geologic processes, followed by additional changes in the Southern Ocean carbon cycle.

Stronger Oceanic CO2 Sink in Eddy‐Resolving Simulations of Global Warming

AbstractAccurately representing the ocean carbon cycle in Earth System Models (ESMs) is essential to understanding the oceanic CO2 sink evolution under CO2 emissions and global warming. A key uncertainty arises from the ESM's inability to explicitly represent mesoscale eddies. To address this limitation, we conduct eddy‐resolving experiments of CO2 uptake under global warming in an idealized mid‐latitude ocean model. In comparison with similar experiments at coarser resolution, we show that the CO2 sink is 34% larger in the eddy‐resolving experiments. 80% of the increase stems from a more efficient anthropogenic CO2 uptake due to a stronger Meridional Overturning circulation (MOC). The remainder results from a weaker reduction in CO2 uptake associated to a weaker MOC decline under global warming. Although being only a fraction of the overall response to climate change, these results emphasize the importance of an accurate representation of small‐scale ocean processes to better constrain the CO2 sink.

Laboratory Observation of the Buffering Effect of Aragonite Dissolution at the Seafloor

AbstractCarbon dioxide entering and acidifying the ocean can be neutralized by the dissolution of calcium carbonate, which is mainly found in two mineral forms. Calcite is the more stable form and is often found in deep‐sea sediments, whilst aragonite is more soluble and therefore rarely preserved. Recent research shows aragonite may account for a much larger portion of marine calcium carbonate export to the ocean interior via the biological pump than previously thought, and that aragonite does reach the deep sea and seafloor despite rarely being buried. If aragonite is present and dissolving at the seafloor it will raise local pH and calcium and carbonate concentrations, potentially enough to inhibit calcite dissolution, representing a deep‐sea, carbonate version of galvanization. Here, we test this hypothesis by simulating aragonite dissolution at the sediment‐water interface in the laboratory and measuring its effects on pH using microsensors. We show that the addition of aragonite to calcite sediment, overlain by seawater undersaturated with respect to both minerals, results in an unchanged alkalinity flux out of the dissolving sediment, suggesting a decrease the net dissolution rate of calcite. In combination with a diagenetic model, we show that aragonite dissolution can suppress calcite dissolution in the top millimeters of the seabed, locally leading to calcite precipitation within 1 day. Future research efforts should quantify this galvanization effect in situ, as this process may represent an important component of the marine carbon cycle, assigning a key role to aragonite producers in controlling ocean alkalinity and preserving climatic archives.

Crucial Role of Bacterial Processes in the Net Community Production of the Amundsen Sea Polynya Disclosed by a Modeling Study

AbstractWe investigated seasonal net community production (NCP) variations in the productive Amundsen Sea Polynya, integrating observational data and ecosystem modeling. NCP estimates (NCPO2/Ar) from in situ O2/Ar data during the austral summer (January‐March) from 2011 to 2018 were compared with those from a one‐dimensional ecosystem model. Early January saw the highest NCPO2/Ar values ranging from 115 to 139 mmol O2 m−2 d−1 among observations. Over the summer, NCPO2/Ar gradually decreased, reaching 40 mmol O2 m−2 d−1 by late February. Late summer values, though one‐third of early January, remained notably positive, indicating net autotrophy. This persisted despite sea surface temperature dropping from &gt;−0.4°C in January to −1.33°C in late February. Refining NCPO2/Ar, we modified bacterial dynamics in our ecosystem model. Significantly improved model performance resulted from two key modifications. First, we introduced bacterial uptake dependency on Phaeocystis primary production. Second, we heightened temperature‐dependent bacterial respiration and production approximately fifteenfold. These changes revealed NCP's remarkable sensitivity to minor temperature fluctuations (&lt;1°C). Furthermore, modified bacterial dynamics delayed the net primary production peak by 2 weeks, underlining the importance of phytoplankton‐bacteria interaction in the ocean carbon cycle. Model results estimated annual NCP in the Amundsen Sea Polynya at 4.04 mol C m−2, aligning with summer NCP estimates (0.2–5.9 mol C m−2) in observational study. Our study advances NCP understanding in polar regions, emphasizing comprehensive observations, including bacterial processes, for understanding intricate biotic interactions. These findings align with past observations on bacterial metabolism and Phaeocystis ecological properties in the Antarctic oceans.

A review of the Indian Ocean carbon dynamics, acidity, and productivity in a changing environment

The Indian Ocean dynamics is governed by the seasonal reversal of monsoon winds and the associated ocean currents. The relatively deep thermocline along the equator due to a lack of steady easterlies, low-latitude connection to the neighbouring Pacific, and a lack of northward heat export due to the position of the Asian continent are important factors in regulating the ocean state. These features make it a unique ecosystem among the world's tropical oceans and determine key features of potential air-sea interaction at different time scales. The pCO2 shows a large seasonal variation linked with monsoon circulation. The Indian Ocean’s northwestern part acts as an atmospheric CO2 source, whereas the northeastern part acts as a net atmospheric CO2 sink. The region between the latitudes of 15°S-50°S in the Indian Ocean is a major subduction zone because of positive wind stress curl. The subducted water masses are transported to the northern Indian Ocean by the cross-equatorial cell (a shallow meridional overturning circulation). Based on the regional studies carried out on the carbonate system in the Indian Ocean, the area north of 15°S is a source of atmospheric CO2, while the area between 15°S and 50°S is a sink. A recent synthesis of models (observational climatology) over different spatial scales provides an estimate of the mean value of CO2 in the north of 37.5°S of the Indian Ocean as − 0.19 ± 0.1 PgC/yr (−0.07 ± 0.14 PgC/yr) during 1985–2018. The estimated decrease in pH (acidification) using model outputs in the Indian Ocean basin is 0.0675 units during 1961–2010, in which the contribution of dissolved inorganic carbon and surface temperature is 69.3 % and 13.8 %, respectively. The range of the Indian Ocean’s annual primary production based on satellite estimates over the last two decades (1998–2018) is 7.72–8.70 Gt C/yr, whereas the climatological mean is 8.24 ± 0.30 Gt C/yr. This paper consolidates the current state of understanding of the Indian Ocean carbon fluxes, acidification, and productivity using available field and satellite-based measurements, model simulations, and re-constructed datasets. It provides an overview of the functioning of the Indian Ocean’s air-to-sea CO2 exchange and highlights its influence on global climate. Finally, it aims to highlight the grey areas of the Indian Ocean carbon cycle that need to be understood.

The role of marine fish-produced carbonates in the oceanic carbon cycle is determined by size, specific gravity, and dissolution rate

Rising CO2 emissions have heightened the necessity for increased understanding of Earth's carbon cycle to predict future climates. The involvement of marine planktonic species in the global carbon cycle has been extensively studied, but contributions by marine fish remain poorly characterized. Marine teleost fishes produce carbonate minerals (‘ichthyocarbonates’) within the lumen of their intestines which are excreted at significant rates on a global scale. However, we have limited understanding of the fate of excreted ichthyocarbonate. We analyzed ichthyocarbonate produced by three different marine teleosts for mol%MgCO3 content, size, specific gravity, and dissolution rate to gain a better understanding of ichthyocarbonate fate. Based on the species examined here, we report that 75 % of ichthyocarbonates are ≤0.91 mm in diameter. Analyses indicate high Mg2+ content across species (22.3 to 32.3 % mol%MgCO3), consistent with previous findings. Furthermore, ichthyocarbonate specific gravity ranged from 1.23 to 1.33 g/cm3, and ichthyocarbonate dissolution rates varied among species as a function of aragonite saturation state. Ichthyocarbonate sinking rates and dissolution depth were estimated for the Atlantic, Pacific, and Indian ocean basins for the three species examined. In the North Atlantic, for example, ~33 % of examined ichthyocarbonates are expected to reach depths exceeding 200 m prior to complete dissolution. The remaining ~66 % of ichthyocarbonate is estimated to dissolve and contribute to shallow water alkalinity budgets. Considering fish biomass and ichthyocarbonate production rates, our results support that marine fishes are critical to the global carbon cycle, contributing to oceanic alkalinity budgets and thereby influencing the ability of the oceans to neutralize atmospheric CO2.

Diversity of Culturable Bacteria from the Coral Reef Areas in the South China Sea and Their Agar-Degrading Abilities.

The South China Sea (SCS) is abundant in marine microbial resources with high primary productivity, which is crucial for sustaining the coral reef ecosystem and the carbon cycle. Currently, research on the diversity of culturable bacteria in the SCS is relatively extensive, yet the culturable bacteria in coral reefs has been poorly understood. In this study, we analyzed the bacterial community structure of seawater samples among Daya Bay (Fujian Province), Qionghai (Hainan Province), Xisha Islands, and the southern South China Sea based on culturable methods and detected their abilities for agar degradation. There were 441 bacterial strains, belonging to three phyla, five classes, 43 genera, and 101 species, which were isolated by marine agar 2216E (MA; Becton Dickinson). Strains within Gammaproteobacteria were the dominant group, accounting for 89.6% of the total bacterial isolates. To investigate vibrios, which usually correlated with coral health, 348 isolates were obtained from TCBS agar, and all isolates were identified into three phylum, three classes, 14 orders, 25 families, and 48 genera. Strains belonging to the genus Vibrio had the greatest number (294 strains), indicating the high selectivity of TCBS agar for vibrios. Furthermore, nineteen strains were identified as potentially novel species according to the low 16S rRNA gene similarity (<98.65%), and 28 strains (15 species) had agar-degrading ability. These results indicate a high diversity of culturable bacteria in the SCS and a huge possibility to find novel and agar-degrading species. Our study provides valuable microbial resources to maintain the stability of coral ecosystems and investigate their roles in the marine carbon cycle.

The Phylogeny and Metabolic Potentials of a Lignocellulosic Material-Degrading Aliiglaciecola Bacterium Isolated from Intertidal Seawater in East China Sea.

Lignocellulosic materials are composed of cellulose, hemicellulose and lignin and are one of the most abundant biopolymers in marine environments. The extent of the involvement of marine microorganisms in lignin degradation and their contribution to the oceanic carbon cycle remains elusive. In this study, a novel lignin-degrading bacterial strain, LCG003, was isolated from intertidal seawater in Lu Chao Harbor, East China Sea. Phylogenetically, strain LCG003 was affiliated with the genus Aliiglaciecola within the family Alteromonadaceae. Metabolically, strain LCG003 contains various extracellular (signal-fused) glycoside hydrolase genes and carbohydrate transporter genes and can grow with various carbohydrates as the sole carbon source, including glucose, fructose, sucrose, rhamnose, maltose, stachyose and cellulose. Moreover, strain LCG003 contains many genes of amino acid and oligopeptide transporters and extracellular peptidases and can grow with peptone as the sole carbon and nitrogen source, indicating a proteolytic lifestyle. Notably, strain LCG003 contains a gene of dyp-type peroxidase and strain-specific genes involved in the degradation of 4-hydroxy-benzoate and vanillate. We further confirmed that it can decolorize aniline blue and grow with lignin as the sole carbon source. Our results indicate that the Aliiglaciecola species can depolymerize and mineralize lignocellulosic materials and potentially play an important role in the marine carbon cycle.