Ocean Carbon Cycle Research Articles

Underway mapping of coastal seawater pH using an automated shipboard analyzer with spectrophotometric detection

The development of field-deployable methods and instruments for the measurement of pH and other carbonate parameters is important for the assessment of the marine carbon cycle, ocean acidification and marine carbon dioxide removal techniques. In this study, a high-precision fully automated integrated syringe-pump-based environmental-water analyzer for pH (iSEA-pH) was developed. The pH is determined spectrophotometrically using purified indicator dye with a high precision (better than ±0.001) and high frequency (3.5min/sample). For the short-term analysis, the measurement frequency was 18 h-1, which revealed pH=7.8148±0.0005 (n=104) for aged surface seawater (S=35) from the western Pacific. For long-term analysis, the measurement frequency was 2 h-1 for 4 days, and the results showed that pH=7.8148±0.0010 (n=200). Three commonly used pH indicators (meta-cresol purple, thymol blue and phenol red) were purified with improved flash chromatography procedures. The autonomous iSEA-pH can automatically correct for the influence of temperature, salinity and other factors on pH measurements to achieve rapid and accurate on-site measurements, which meet the "climate" goal of the Global Ocean Acidification Observing Network (uncertainty is ±0.003). Three identical iSEA-pH systems were developed and successfully applied in mesocosm experiments and several coastal and open ocean cruises with excellent in field performance.

Experimental evidence that nitrogen-fixing cyanobacterium Trichodesmium spp. supplies new nitrogen source to marine phytoplankton

In oligotrophic oceans, primary productivity is widely limited by nitrogen bioavailability. The broadly distributed and abundant nitrogen-fixing cyanobacterium Trichodesmium plays an important role in the oceanic nitrogen and carbon cycles by providing a “new” source of nitrogen to many non-diazotrophic microbes, thereby driving new primary production in the ocean. However, the underlying process and mechanism of nitrogen supply from Trichodesmium to other phytoplankton remain unclear. Here, our results demonstrated that the fixed nitrogen released by Trichodesmium could sustain the growth of a non-nitrogen-fixing cyanobacterium Synechococcus sp. PCC 7002, including a mutant strain (Mut-ureA) that cannot use urea. However, the growth rate of Mut-ureA was approximately 20% lower than that of the wild strain when Trichodesmium filtrate was used for nitrogen supply. This result was consistent with the composition of the Trichodesmium exudate, in which urea comprised more than 20% of the total fixed nitrogen that was released. It is evident from the experiments that a fraction of the Trichodesmium-derived nitrogen was not available to Mut-ureA. Our results suggested that Trichodesmium produces dissolved organic nitrogen, especially a certain amount of urea as a “new” nitrogen source, benefiting in particular populations of surrounding phytoplankton species.

Net Community Production and Inorganic Carbon Cycling in the Central Irminger Sea

AbstractThe subpolar North Atlantic plays an outsized role in the atmosphere‐to‐ocean carbon sink. The central Irminger Sea is home to well‐documented deep winter convection and high phytoplankton production, which drive strong seasonal and interannual variability in regional carbon cycling. We use observational data from moored carbonate chemistry system sensors and annual turn‐around cruise samples at the Ocean Observatories Initiative's Irminger Sea Array to construct a near‐continuous time series of mixed layer total dissolved inorganic carbon (DIC), pCO2, and total alkalinity from summer 2015 to summer 2022. We use these carbonate chemistry system time series to deconvolve the physical and biological drivers of surface ocean carbon cycling in this region on seasonal, annual, and interannual time scales. We find high annual net community production within the seasonally varying mixed layer, averaging 9.8 ± 1.6 mol m−2 yr−1 with high interannual variability (range of 6.0–13.9 mol m−2 yr−1). The highest daily net community production rates occur during the late winter and early spring, prior to the observed high chlorophyll concentrations associated with the spring phytoplankton bloom. As a result, the winter and early spring play a much larger role in biological carbon export from the mixed layer than traditionally thought.

Sources of dissolved carbon in large rivers: Insights from coupled 13C-14C in the upper Changjiang (Yangtze) River

Export of dissolved carbon from rivers connects terrestrial and oceanic carbon cycling, and represents a key component of global carbon budgets. In this study, we measured the concentrations of major ions, the sulfur isotopic composition of sulfate, and the stable (δ13CDIC) and radioactive (Δ14CDIC) isotopic composition of the dissolved inorganic carbon (DIC) in the upper Changjiang (Yangtze) River, China. Their spatio-temporal variabilities give constrains on carbon cycling across catchments with diverse physiographic conditions (e.g. climate, hydrology, geology, land-use change). Daily DIC fluxes were modeled using a hydro-chemical approach and showed significant temporal variations agreeing with the measured data, and supporting a conservative mixing behavior in river channel, similar to variations in anions and cations concentrations. However, the modeled (δ13CDIC) were always higher (up to 3.1‰, and 0.8‰ on average) than the measured values. In addition, Δ14CDIC would suggest a much lower carbonate contribution (8 to 33%) than concentration mixing relationship (40 to 64%). From the chemical weathering reaction front to the riverine transport, DIC can be processed with little net change in concentration but isotopic exchange and it can also exchange with the soil and/or atmospheric CO2 as an open system. The openness parameter (ψ) uses the Δ14CDIC to estimate the extent of such exchange, ranging from 0 (fully closed system) to 1 (fully open system) and varied from 0.26±0.10 to 0.86±0.06. ψ showed a strong relationship with drainage mean elevation, likely to represent the elevation-induced climate variation (i.e. precipitation and temperature) but also the proportion of cropland in the drainage area. All of these parameters are correlated and point toward a biological impact on ψ. In addition, modern DIC yield, estimated from Δ14CDIC, is positively correlated to ψ. This study demonstrates that Δ14CDIC measurements can greatly underestimate the contribution of carbonate-derived carbon because of exchange (estimated by ψ) especially in high biological-productivity areas.

Variation in soil organic carbon with structural composition of mangrove species in the Sundarbans

The world's biggest continual mangrove swampy land is the Sundarbans Mangrove Forest, which is crucial to both the terrestrial and marine carbon cycles. While numerous studies have focused on organic carbon variations within this ecosystem, few have explored the interaction between carbon stocks and the structural composition of mangrove species. This study sought to investigate the connection between soil organic carbon accumulation and functional attributes of vegetation (DBH, basal area). This study was carried out on four vegetative and two non-vegetative plots in three different sites within the oligohaline zone. Based on species Iv, the Karamjol area was prevalent by Heritiera fomes (Iv =139.3). In contrast, the Ghagramari area was predominated by Avicennia officinalis (IV =105.1). Accumulation of TBC, Avicennia officinalis presented the highest, despite having a smaller number of individuals within the study area. 1 m soil core was pulled out from each subplot of each main plot by using a one-meter-long open face peat auger. The forest areas exhibited maximum soil organic carbon accumulation, which was significantly (p < 0.01) higher than non-vegetative areas. Moreover, the mean soil C/N ratios in the Karamjol area (13.4±0.2) and Ghagramari area (13.2± 0.2) were significantly (p < 0.01) greater than those in the non-vegetative area (12.3±0.1). These findings suggest that regardless of the dominant species, species richness, or size (tall or dwarf) of the mangroves, a particular quantity of organic carbon is captured within the mangrove soil. Thus, when making future decisions, it is crucial to repute the role of the Sundarbans mangrove in the accumulation of organic and biomass carbon, which can directly affect mitigating global warming.

A modified dithionite reduction method for the quantification of iron-bound organic carbon in marine sediments

Iron-bound organic carbon (Fe-OC) plays a significant role in the global marine carbon cycle, facilitating the long-term accumulation and storage of organic carbon. However, the conventional method for quantifying Fe-OC, known as the citrate-bicarbonate-dithionite (CBD) method, has limitations in terms of its efficiency in extracting both Fe-OC and iron (Fe). Another CBD method, commonly used for Fe speciation analysis in paleoenvironmental reconstructions, has shown efficient and selective extraction of Fe oxides; however, its effectiveness in extracting Fe-OC remains uncertain. To evaluate the efficiency of the two CBD methods, synthetic samples spiked with organic acid/environmental organic matter‑iron (hydr)oxide coprecipitates and a marine sediment sample were subjected to extraction. The CBD approach for Fe speciation analysis at pH 4.8 on spiked samples demonstrated higher efficiency compared to the conventional CBD method, but not for samples of marine sediment. This result suggests that the synthetic Fe-OC in the spiked samples did not accurately represent the realistic state of Fe-OC in marine sediments. We found that the pH of the leaching solution during the CBD extraction significantly influenced the efficiency of the Fe-OC and Fe extraction. Our tests at pH 4.8, 5.5, 6.0, 6.5, and 7.0 revealed that lower pH enhanced the extraction of Fe, but hindered the release of Fe-OC. Our study revealed that the new CBD (pH 6.5) method resulted in approximately 30% higher yields of Fe-OC and Fe compared to the conventional CBD method, despite of significant variability in the Fe-OC data. The modified CBD (pH 6.5) method uses lower concentration of extraction reagent and reaction temperature, both of which is considered beneficial. Therefore, we suggest that the new CBD method (pH 6.5) is at least of similar efficiency as the conventional method, and can be employed alongside the established method to facilitate the evaluation of the role of Fe-OC in the marine carbon cycle.

Model exploration of microplastic effects on zooplankton grazing reveal potential impacts on the global carbon cycle

Amongst the increasing number of anthropogenic stress factors threatening ocean equilibrium, microplastics (MP; < 5 mm) have emerged as particularly worrisome. In situ observations have shown that MP accumulate in large areas at the surface ocean where it may threaten the functioning marine species. In particular, experimental evidence has shown that the grazing rates of several zooplankton species may be significantly altered by MP. These direct impacts on zooplankton may alter nutrient and carbon cycling. However, how these laboratory results may translate into impacts on the global ocean is yet unknown. Here, we use a global coupled physical-biogeochemical model including MP (NEMO/PISCES-PLASTIC) to investigate the impacts of MP exposure on zooplankton grazing rates. Drawing from experimental results, we use varying water contamination impact thresholds to explore the biogeochemical consequences of MP impacts on short (10 years) and long timescales (100 years). Our simulations show that the geographical extent of MP impacts on zooplankton remains restricted to about 10% of the global ocean surface, even after 100 years of constant MP contamination. However, in the most contaminated regions (e.g. the sub-tropical gyres), [MP] has surged from a few mg m−3 to > 50 mg m−3. Despite their oligotrophic nature and limited contribution to the overall ocean carbon cycle, MP impacts on zooplankton grazing could disrupt carbon cycling in these highly contaminated regions (up to 50% reduction in yearly primary production, carbon export fluxes and organic matter remineralisation after 100 years). Our research suggests that persistent MP pollution in the ocean could diminish primary production by 4%. In spite of the large sensitivity of our results to the water contamination impact threshold, we suggest MP impacts on zooplankton grazing may cause an annual loss of 1 Gt yr−1 of exported carbon after 100 years, if MP inputs remain constant globally.

Arctic Oceanic Carbon Cycle: A Comprehensive Review of Mechanisms, Regulations, and Models

Understanding the oceanic carbon cycle, particularly in the Arctic regions, is crucial for addressing climate change. However, significant research gaps persist, especially regarding climate effects on the oceanic carbon cycle in these regions. This review systematically explores Arctic-related research, focusing on mechanisms, regulatory frameworks, and modelling approaches in the oceanic carbon cycle, carbon sink, climate change impact, and maritime shipping. The findings highlight the Arctic’s limited observer presence and high operational costs, hindering the data availability and studies on carbon-cycle changes. This underscores the need to integrate real-time Arctic Ocean monitoring data. Carbon sink research urgently requires direct methods to measure anthropogenic carbon uptake and address uncertainties in air–ocean carbon fluxes due to sea ice melting. Unlike terrestrial carbon cycling research, carbon-cycle studies in the oceans, which are essential for absorbing anthropogenic emissions, receive insufficient attention, especially in the Arctic regions. Numerous policies often fall short in achieving effective mitigation, frequently depending on voluntary or market-based approaches. Analyzing carbon-cycle and sink models has uncovered limitations, primarily due to their global perspective, hampering in-depth assessments of climate change effects on the Arctic regions. To pave the way for future research, enhancing Arctic Ocean climate data availability is recommended, as well as fostering international cooperation in carbon-cycle research, enforcing carbon policies, and improving regional modelling in the Arctic Ocean.

An algorithm-guided Ediacaran global composite δ13Ccarb–Bayesian age model

While it remains uncertain whether excursions in the stable carbon isotopic composition of Ediacaran marine carbonate (δ13Ccarb) represent globally synchronous events (or a direct measure of ocean carbon cycling), the absence of widely distributed and readily preservable fauna, and the presence of several iconic carbon isotope excursions (CIEs), has sustained δ13Ccarb correlation as the primary means to establish relative time relationships for Ediacaran successions. Here we present an Ediacaran global δ13Ccarb composite built with a dynamic time warping (DTW) time-normalization algorithm that generates libraries of least-squares alignments between chemostratigraphic records of unequal length and distinct sediment accumulation rates. When developing a δ13Ccarb composite for each of 16 globally distributed Ediacaran paleo-depositional regions, we selected high Pearson r alignments that conformed with published geological guidance about the correlation of constituent sections. When applying DTW to align these regional algorithmic composites into one global δ13Ccarb stack, we selected alignments that allied the excursions that field workers have established (or speculated) are the Marinoan cap carbonate excursion, the Shuram excursion, and/or the basal Cambrian excursion. There are strengths and weaknesses to making explicit the temporal relationships (point-to-point correspondences) often left implicit in visual correlation. One strength is to extrapolate depositional ages by means of isotopic correlation, and here we explored this with a Bayesian Markov chain Monte Carlo age model that predicts a median age, and uncertainty, for every carbonate stratum in the global Ediacaran δ13Ccarb composite. Yet, one must caution against a false accuracy that can arise from selecting one alignment among many possibilities––the likelihood that time-uncertain time series can be stretched and squeezed into one unequivocal alignment is low. Thus, while these alignments are grounded in the expert assessment of the field worker, this global Ediacaran δ13Ccarb–Bayesian age model should be viewed as a working hypothesis to enrich, but not arbitrate, discussions of the correlation, synchrony, and completeness of Ediacaran successions.

Climate change induces shifts in coastal Baltic Sea surface water microorganism stress and photosynthesis gene expression.

The world's oceans are challenged by climate change linked warming with typically highly populated coastal areas being particularly susceptible to these effects. Many studies of climate change on the marine environment use large, short-term temperature manipulations that neglect factors such as long-term adaptation and seasonal cycles. In this study, a Baltic Sea 'heated' bay influenced by thermal discharge since the 1970s from a nuclear reactor (in relation to an unaffected nearby 'control' bay) was used to investigate how elevated temperature impacts surface water microbial communities and activities. 16S rRNA gene amplicon based microbial diversity and population structure showed no difference in alpha diversity in surface water microbial communities, while the beta diversity showed a dissimilarity between the bays. Amplicon sequencing variant relative abundances between the bays showed statistically higher values for, e.g., Ilumatobacteraceae and Burkholderiaceae in the heated and control bays, respectively. RNA transcript-derived activities followed a similar pattern in alpha and beta diversity with no effect on Shannon's H diversity but a significant difference in the beta diversity between the bays. The RNA data further showed more elevated transcript counts assigned to stress related genes in the heated bay that included heat shock protein genes dnaKJ, the co-chaperonin groS, and the nucleotide exchange factor heat shock protein grpE. The RNA data also showed elevated oxidative phosphorylation transcripts in the heated (e.g., atpHG) compared to control (e.g., atpAEFB) bay. Furthermore, genes related to photosynthesis had generally higher transcript numbers in the control bay, such as photosystem I (psaAC) and II genes (psbABCEH). These increased stress gene responses in the heated bay will likely have additional cascading effects on marine carbon cycling and ecosystem services.

Microbial respiration in contrasting ocean provinces via high-frequency optode assays

Microbial respiration is a critical component of the marine carbon cycle, determining the proportion of fixed carbon that is subject to remineralization as opposed to being available for export to the ocean depths. Despite its importance, methodological constraints have led to an inadequate understanding of this process, especially in low-activity oligotrophic and mesopelagic regions. Here, we quantify respiration rates as low as 0.2 µmol O2 L-1 d-1 in contrasting ocean productivity provinces using oxygen optode sensors to identify size-fractionated respiration trends. In the low productivity region of the North Pacific Ocean at Station Papa, surface whole water microbial respiration was relatively stable at 1.2 µmol O2 L-1 d-1. Below the surface, there was a decoupling between respiration and bacterial production that coincided with increased phytodetritus and small phytoplankton. Size-fractionated analysis revealed that cells &amp;lt;5 µm were responsible for the majority of the respiration in the Pacific, both at the surface and below the mixed layer. At the North Atlantic Porcupine Abyssal Plain, surface whole water microbial respiration was higher (1.7 µmol O2 L-1 d-1) than in the Pacific and decreased by 3-fold below the euphotic zone. The Atlantic size-fraction contributions to total respiration shifted on the order of days during the evolution of a phytoplankton bloom with regular storm disturbances. The high-resolution optode method used in the Atlantic captured these significant shifts and is consistent with coinciding stain-based respiration methods and historical site estimates. This study highlights the dynamic nature of respiration across vertical, temporal, and size-fractionated factors, emphasizing the need for sensitive, high-throughput techniques to better understand ocean ecosystem metabolism.

Effect of micro-plastic particles on coral reef foraminifera

Foraminifera are single-celled protists which are important mediators of the marine carbon cycle. In our study, we explored the potential impact of polystyrene (PS) microplastic particles on two symbiont-bearing large benthic foraminifera species—Heterostegina depressa and Amphistegina lobifera—over a period of three weeks, employing three different approaches: investigating (1) stable isotope (SI) incorporation—via 13C- and 15N-labelled substrates—of the foraminifera to assess their metabolic activity, (2) photosynthetic efficiency of the symbiotic diatoms using imaging PAM fluorometry, and (3) microscopic enumeration of accumulation of PS microplastic particles inside the foraminiferal test. The active feeder A. lobifera incorporated significantly more PS particles inside the cytoplasm than the non-feeding H. depressa, the latter accumulating the beads on the test surface. Photosynthetic area of the symbionts tended to decrease in the presence of microplastic particles in both species, suggesting that the foraminiferal host cells started to digest their diatom symbionts. Compared to the control, the presence of microplastic particles lead to reduced SI uptake in A. lobifera, which indicates inhibition of inorganic carbon and nitrogen assimilation. Competition for particulate food uptake was demonstrated between algae and microplastic particles of similar size. Based on our results, both species seem to be sensitive to microplastic pollution, with non-feeding H. depressa being more strongly affected.

Rhodobacteraceae are key players in microbiome assembly of the diatom Asterionellopsis glacialis.

Most, if not all, microeukaryotic organisms harbor an associated microbial community, termed the microbiome. The microscale interactions that occur between these partners have global-scale consequences, influencing marine primary productivity, carbon cycling, and harmful algal blooms to name but a few. Over the last decade, there has been a growing interest in the study of phytoplankton microbiomes, particularly within the context of bloom dynamics. However, long-standing questions remain regarding the process of phytoplankton microbiome assembly. The significance of our research is to tease apart the mechanism of microbiome assembly with a particular focus on identifying bacterial taxa, which may not merely be symbionts but architects of the phytoplankton microbiome. Our results strengthen the understanding of the ecological mechanisms that underpin phytoplankton-bacteria interactions in order to accurately predict marine ecosystem responses to environmental perturbations.

Mussel Culture Activities Facilitate the Export and Burial of Particulate Organic Carbon

The recent expansion of shellfish mariculture could significantly impact the ocean carbon cycle and its associated biogeochemical processes. To understand the source and fate of particulate organic carbon (POC), a summer cruise was conducted from September 8 to 10, 2022, at a mussel farm on Gouqi Island and its adjacent areas located in the East China Sea. Parameters included in situ temperature and salinity, contents of dissolved oxygen (DO), suspended particulate matter (SPM), POC, and chlorophyll a (Chl a), as well as the stable carbon isotopic composition (δ13C) of organic matter in particle and sediment samples, which were analyzed to facilitate a comparative assessment of the areas inside and outside the mussel farm. The POM was much fresher (POC/Chl a &lt; 150) inside the farm with little impact from sediment resuspension (lower SPM content, 11.6 ± 6.6 mg/L), while a significant influence of sediment resuspension was found outside the farm (SPM &gt; 20 mg/L, POC/Chl a &gt; 150). A two end-member mixing model showed that 82.0 ± 6.0% of POC originated from marine algae within the farm, much higher than that outside the farming area (66.1 ± 7.8%). Moreover, elevated DO saturation but relatively low Chl a concentration within the farm suggested continuous algae consumption following potential high productivity. The averaged δ13C values were similar among suspended POC, sinking POC, and sedimentary organic carbon within the farm, implying the fast export and burial of POC. This is likely due to the filter-feeding habits of mussels, who ingest fresh POC and then pack it as fecal pellets that rapidly settle into the sediment. This study sheds light on the distribution and sources of POM inside and outside the mussel farm on Gouqi Island, enhancing our understanding of the marine carbon cycle on shellfish farms and providing insights into the underlying biogeochemical processes.

Rates of sedimentary organic carbon preservation in the Bering Sea and Chukchi Sea, and their response to climate change over the past 75 years

The Arctic Ocean is rapidly warming. In this paper, we document changes in the source, distribution, and accumulation rate of organic matter (OM) for three sediment cores in the Bering and Chukchi seas to investigate changes to the oceanic carbon cycle over the past ∼75 years. Analyses were undertaken using bulk properties, such as total organic carbon (OC), total nitrogen (TN), stable carbon isotope (δ13C), OC to TN molar ratio (C/N), and biomarkers (lignin phenols). The OC, TN, and lignin (Σ8, in mg (g sediment)−1) contents were found to be significantly related to the fraction of sand (Sand%) as a result of sediment sorting and/or different sediment sources. Using an end-member mixing model, we estimated marine OM accounted for ∼67% of all organic matter in all cores, being the dominant source. Moreover, terrestrial OM mainly originated from angiosperm non-woody tissue, while moss contribution was negligible. In the Bering Sea shelf, OC% has not changed over time, but there have been some extreme peaks around the 1960s–1970s and in 2005, which correspond to increased terrestrial input from North American rivers. In the southern core from the Chukchi Sea, the OC% showed an apparent decrease after 2000, accompanied by an increase in sand content, likely due to enhanced delivery of volcanic rocks by the Pacific Inflow from the Bering Sea. In contrast, in the northern core from the Chukchi Sea, the OC% showed a significant increasing trend, with some peaks occurring at the same time as in the Bering Sea core. The mean increase rate was compared to the increase in Siberian riverine discharge, which both could be caused by long-term climate changes. The results highlight the regional differences in the response of OC preservation to climate change and other controlling factors. Further studies with higher spatial resolution are required to better understand the preservation of OC in response to climate change.

Role of sea spray aerosol at the air–sea interface in transporting aromatic acids to the atmosphere

Abstract. Aromatic acids are ubiquitous in seawater (SW) and can be transported to the atmosphere via sea spray aerosol (SSA). Despite their importance in affecting the global radiative balance, the contribution of marine aromatic acids and their transport mechanisms through SSA remain unclear. Herein, the distribution of particle size and number concentration of SSA produced in SW containing nine different aromatic acids (i.e., benzoic acids, benzenedicarboxylic acids, hydroxybenzoic acids, vanillic acid, and syringic acid) was studied using a custom-made SSA simulation chamber; moreover, the enrichment of aromatic acids in SSA and their emission flux to the atmosphere were analyzed. Transmission electron microscopy (TEM) images clearly revealed that aromatic acids can be transferred to the nascent SSA. Interestingly, the morphology associated with benzenedicarboxylic-acid-coated particles showed that aromatic acids can promote the growth of other surfaces of sea salt, thus making the sea salt core spherical. Aromatic acids showed a significant enrichment behavior at the air–sea interface, which clearly indicated that SSA represents a source of aromatic acids in the atmosphere. Vanillic acid had the largest global emission flux through SSA (962 t yr−1), even though its concentration in SW was lower. The calculated results indicated that the global annual flux of aromatic acids was affected not only by the concentration in SW, but also by their enrichment factor (EF). These data are critical for further quantifying the contribution of organic acids to the atmosphere via SSA, which may provide an estimate of the potential influence of the atmospheric feedbacks to the ocean carbon cycle.

Alpha-glucans from bacterial necromass indicate an intra-population loop within the marine carbon cycle

Phytoplankton blooms provoke bacterioplankton blooms, from which bacterial biomass (necromass) is released via increased zooplankton grazing and viral lysis. While bacterial consumption of algal biomass during blooms is well-studied, little is known about the concurrent recycling of these substantial amounts of bacterial necromass. We demonstrate that bacterial biomass, such as bacterial alpha-glucan storage polysaccharides, generated from the consumption of algal organic matter, is reused and thus itself a major bacterial carbon source in vitro and during a diatom-dominated bloom. We highlight conserved enzymes and binding proteins of dominant bloom-responder clades that are presumably involved in the recycling of bacterial alpha-glucan by members of the bacterial community. We furthermore demonstrate that the corresponding protein machineries can be specifically induced by extracted alpha-glucan-rich bacterial polysaccharide extracts. This recycling of bacterial necromass likely constitutes a large-scale intra-population energy conservation mechanism that keeps substantial amounts of carbon in a dedicated part of the microbial loop.

Combining deep learning with physical parameters in POC and PIC inversion from spaceborne lidar CALIOP

POC and PIC are indispensable components in the global ocean carbon cycle, their transport and space distribution being driven by the biological carbon pump and the carbonate pump. However, passive ocean color remote sensing, usually employed for POC and PIC research, experiences serious shortcomings in polar winter conditions due to its reliance on sunlight, leading to scarce data coverage in the polar regions. In contrast, CALIOP has shown considerable promise in high-latitude ocean observing. Past approaches to estimate POC from CALIOP data relied on bbp measurements obtained through the application of algorithms that presume an empirical linear correlation between bbp and the backscatter coefficient measured at 180°. This method does not account for any spatiotemporal variability in the conversion coefficient. Furthermore, the potential of CALIOP to provide estimates of PIC has not been explored yet. Here, we developed an innovative Two-Branch-Two-Step (TBTS) model to estimate POC and PIC from CALIOP data, which effectively expands the spatial coverage of the MODIS products. This method exploits the strength of deep learning while encapsulating the generalizability of physical parameters. This method consists of two branches: (1) a deep learning branch based on lidar attenuated backscatter waveform and (2) a branch focusing on physical parameters, including the total column-integrated depolarization ratio and the subsurface cross-polarized component of column-integrated backscatter. The model’s generalizability and accuracy are confirmed through the evaluation of a test dataset and validation using in-situ measurements. Our model outperforms several other prevalent machine learning models. We also dissected the importance of different parts of the input data using SHAP tools, thereby providing insights into the black-box nature of deep learning models. Using CALIOP products, we put forth the inaugural estimation of interannually resolved PIC and POC standing stocks in polar regions. The implementation of CALIOP in polar regions bridges the gap inherent in passive ocean color measurements. Lidar-derived total global PIC standing stock is estimated to be 8% higher than that from MODIS, while the POC standing stock is boosted by 17.2%. The carbon standing stock in polar regions exhibits significant inter-annual variability and apparent seasonal periodicity. Hence, results from this research effort clearly reveal that the exploitation of the CALIOP-derived POC and PIC measurements, in combination with the application of new approaches and algorithms to future space lidar data, will undeniably enhance our comprehension of the polar ocean carbon cycle. However, it is important to acknowledge that the CALIOP products may inherit biases from the MODIS data used for training. Hence, where MODIS data is available, it’s still the “better” product to use, but where there isn’t MODIS data, the CALIOP product is extremely useful, especially in the polar regions.

Contribution of Smoke Aerosols From Wildfires in Indo‐China Peninsula to the Western Pacific Ocean Carbon Sink

AbstractSmoke aerosols from wildfires play a vital role in marine ecosystems and the ocean carbon cycle. This study analyzed a severe wildfires incident occurred in the Indo‐China Peninsula on 26 March 2019, and assessed its impact on ocean carbon sink. The satellite observations showed that the wildfires covered an area of about 56% of the entire peninsula, burning an area of 1.17 × 106 km2. Consequently, the wildfires discharged about 0.43 × 109 kg carbon. Moreover, a substantial amount of smoke released by severe wildfires was carried downstream by the wind and reached the western Pacific Ocean within 2 days. These smoke aerosols contribute to the ocean carbon sink through the mechanisms of the biological pump and their own carbon deposition. Model simulation results showed smoke aerosols contribute 6.44 × 104 kg black carbon to surface ocean by their own carbon deposition. Moreover, during the period of smoke aerosol's deposition, the flourishing growth of phytoplankton resulted in an increased carbon export of 0.25 ± 0.09 × 109 kg carbon (the biological pump mechanism), which represented approximately 57.97% ± 20.30% of the carbon emissions originating from the wildfire‐affected source region. Our research showed a positive impact of large wildfires on the ocean carbon sink, indicating the potential of smoke aerosols to alleviate the climate pressures resulting from carbon dioxide released by wildfires through improving the capacity of ocean carbon sink.

Phagocytosis in Marine Coccolithophore Gephyrocapsa huxleyi: Comparison between Calcified and Non-Calcified Strains.

Coccolithophores play a significant role in marine calcium carbonate production and carbon cycles, attributing to their unique feature of producing calcareous plates, coccoliths. Coccolithophores also possess a haplo-diplontic life cycle, presenting distinct morphology types and calcification states. However, differences in nutrient acquisition strategies and mixotrophic behaviors of the two life phases remain unclear. In this study, we conducted a series of phagocytosis experiments of calcified diploid and non-calcified haploid strains of coccolithophore Gephyrocapsa huxleyi under light and dark conditions. The phagocytosis capability of each strain was examined based on characteristic fluorescent signals from ingested beads using flow cytometry and fluorescence microscopy. The results show a significantly higher phagocytosis percentage on fluorescent beads in the bacterial prey surrogates of the non-calcified haploid Gephyrocapsa huxleyi strain, than the calcified diploid strain with or without light. In addition, the non-calcified diploid cells seemingly to presented a much higher phagocytosis percentage in darkness than under light. The differential phagocytosis capacities between the calcified diploid and non-calcified haploid Gephyrocapsa huxleyi strains indicate potential distinct nutritional strategies at different coccolithophore life and calcifying stages, which may further shed light on the potential strategies that coccolithophore possesses in unfavorable environments such as twilight zones and the expanding coccolithophore niches in the natural marine environment under the climate change scenario.