Marine Aquaculture Research Articles

TEKNIK PEMBENIHAN ABALONE (HALIOTIS SQUAMATA) DI BALAI PERIKANAN BUDIDAYA LAUT LOMBOK

The aim of this research is to describe the abalone (Haliotis squamata) hatchery technique at the Lombok Marine Aquaculture Center (BPBL). This research is participatory research, researchers took part in all activities at the Lombok Marine Aquaculture Center (BPBL). Data collection methods are by observation and documentation. The data obtained was analyzed using descriptive statistics. The data collected is related to abalone hatching techniques. The results of research regarding abalone hatchery techniques at the Lombok Marine Cultivation Fisheries Center went through several stages, namely container preparation, gonad maturity selection, stimulation, spawning, abalone stocking, feeding, water quality management and harvesting

Biochemical and molecular responses to long-term salinity challenges in northern quahogs Mercenaria mercenaria

Salinity is a key environmental factor for aquatic organisms for survival, development, distribution, and physiological performance. Salinity fluctuation occurs often in estuary and coastal zones due to weather, tide, and freshwater inflow and thus heavily affects coastal marine aquaculture. The northern quahog Mercenaria mercenaria is an important aquaculture species along the Atlantic coast in the US, but information on the effects of salinity stress on physiological, immunological, and molecular responses is still scarce. The goal of this study was to investigate cellular and molecular responses through challenges of long-term hypo- and hyper-salinities in northern quahogs. The objectives were to: 1) measure the survival of market-sized quahogs under a three-month salinity challenge at 15 (hyposalinity), 25 (control), and 35 ppt (hypersalinity); 2) determine cellular changes of hemocytes through analysis of immune functions; 3) determine changes of the total free amino acid concentration in gills, and 4) evaluate the molecular responses in gills using RNAseq technology with qPCR verification. After a three-month salinity challenge, no mortality was observed, and increases in body weight were identified with a significantly higher increase in the hypersalinity group. Northern quahogs equilibrated their hemolymph osmolality with the ambient seawater and were verified to be osmoconformers. Significant differences were observed in total hemocyte concentration, lysosomal presence, ROS production, and phagocytic rate, but no differences were found in cell viability. The total free amino acid concentration within gills was positively correlated to water salinity, indicating amino acids were critical organic osmolytes. The transcriptome of gills using RNAseq revealed differential expression genes (DEG) encoding amino acid transporters (SLC6A3, SLC6A6, SLC6A13, SLC25A38), ion channel proteins (T38B1, GluCl, ATP2C1), and water channel protein (AQP8) in hyposalinity or/and hypersalinity groups, indicating these genes play critical roles in intracellular isosmotic regulation. Overall, the findings in this study provided new insights into osmoregulation in northern quahogs.

Do red tide events promote an increase in zooplankton biodiversity?

Red tides occurring off the southern coast of Korea impact the marine ecosystem and aquaculture industries. Zooplankton are crucial in the food web, connecting primary producers to higher predators and interact diversely with red tide organisms. This study explores dynamics of the zooplankton community over seven years including three red tide and four non-red tide years in Tongyeong using metabarcoding. In non-red tide years, zooplankton diversity showed typical seasonal patterns, increasing from June to early October. However, during red tide years, diversity remained high, with a shift in species composition-decreased Copepoda and increased Branchiopoda, Echinodermata, Malacostraca, and Annelida. Diversity indices were significantly higher in red tide years across all periods except for the richness in “after” that showed an insignificant higher value. The differences in zooplankton assemblages across periods were influenced by surface temperatures and the density of the red tide-causing alga Margalefidinium polykrikoides. Eight species emerged as indicator species and showed direct correlations with M. polykrikoides and among them, seven species were indicator species for red tide occurrence years. The ecological characteristics of M. polykrikoides blooms and their recurrent occurrences over several decades suggest that zooplankton may adapt to the toxins and use these blooms as spawning cues. Overall, this study provides comprehensive understanding on changes in zooplankton communities during red tide events, offering novel insights into their ecology.

Dynamic changes in pigmentation-related gene expression during morphogenesis in Plectropomus leopardus revealed by comparative transcriptome analysis

Plectropomus leopardus is a valuable marine aquaculture fish, prized by consumers for its high nutritional value and gorgeous appearance. The economic significance of this species is largely influenced by its body color, prompting researchers to become increasingly interested in understanding the mechanisms behind its color formation. However, previous studies have mainly focused on the molecular mechanisms of body color formation during the adult stage of this species. In this study, it was observed that the body color of P. leopardus undergoes four distinct stages during early morphogenesis: transparent (PT), red (PR), red with spots (PRS), and brown with spots (PBS). The L*a*b* values of skin at each stage differ significantly. The number and distribution of erythrophores and melanophores play a crucial role in determining the body colors of P. leopardus. Transcriptome analysis of the skin at these stages revealed multiple differentially expressed genes (DEGs) and signaling pathways related to pigmentation. These pigmentation-related DEGs can be categorized into carotenoid metabolism-related genes (e.g., scarb1, ldlr, plin2, apod, ttc39b, etc), melanin synthesis-related genes (e.g., tyr, tyrp1, dct, pmel, slc7a11, etc), and genes related to pigment cell development (pnp, ednrb, csf1r1, sox10, bnc2). GO and KEGG enrichment analysis indicated that processes like melanin synthesis (e.g., wnt signal pathway, melanogenesis, tyrosine metabolism, etc.), lipid metabolism (e.g., cholesterol metabolism, linoleic acid metabolism, arachidonic metabolism, fatty acid biosynthesis, etc.), and pigment cell development (e.g., pigment cell differentiation, cell development, etc.) are likely involved in the body color formation in P. leopardus. Finally, we proposed a hypothesis regarding carotenoid metabolism in erythrophores and melanin synthesis in melanophores of P. leopardus skin, drawing from existing research reports and transcriptome data. Overall, this study provides a new perspective on the molecular regulatory mechanisms of body color formation in P. leopardus, laying a theoretical foundation for molecular-assisted breeding of body color traits in this species.

Unveiling the pathogenic and multidrug-resistant profiles of Vibrio alfacsensis: A potential identified threat in turbot (Scophthalmus maximus) aquaculture

Vibrio alfacsensis is traditionally seen as an environmental symbiont within its genus, with no detailedly documented pathogenicity in marine aquaculture to date. This study delves into the largely unexplored pathogenic potential and emerging antibiotic resistance of V. alfacsensis. The VA-1 strain, isolated from recirculating aquaculture system (RAS) effluent of cultured turbot (Scophthalmus maximus), underwent comprehensive analysis including biochemical identification, antibiotic susceptibility testing and reinfection trials. The results confirmed VA-1's pathogenicity and significant multiple antibiotic resistance. VA-1 could induce systemic infection in turbot, with symptoms like kidney enlargement, exhibiting virulence comparable to known Vibrio pathogens, with an LD50 around 2.36 × 106 CFU/fish. VA-1's remarkable resistance phenotype (14/22) suggested potential for genetic exchange and resistance factor acquisition in aquaculture environments. Phylogenetic analysis based on 16S rDNA sequences and whole-genome sequencing has firmly placed VA-1 within the V. alfacsensis clade, while genome-wide analysis highlights its similarity and diversity in relation to strains from across the globe. VA-1 contained numerous replicons, indicating the possibility for the spread of resistance and virulence genes. This study suggests V. alfacsensis may acquire and transfer pathogenic and resistant traits through horizontal gene transfer, a likelihood intensified by changing environmental and aquaculture conditions, highlighting the need for vigilant pathogen monitoring and new non-antibiotic treatments.

High‐Resolution Longitudinal eDNA Metabarcoding and Morphological Tracking of Planktonic Threats to Salmon Aquaculture

ABSTRACTSalmonid aquaculture, a major component of the Northern European, North American, and Chilean coastal economies, is under threat from challenges to gill health, many of which originate from plankton communities. A first step toward mitigating losses is to characterize the biological drivers of poor gill health. Numerous planktonic taxa have been implicated, including toxic and siliceous microalgae, hydrozoans, and scyphozoans; however, rigorous longitudinal surveys of plankton diversity and gill health have been lacking. In the current study, we present and assess an exhaustive identification approach combining both morphological and molecular methods together with robust statistical models to identify the planktonic drivers of proliferative gill disease (PGD) and fish mortality. We undertook longitudinal evaluation at two marine aquaculture facilities on the west coast of Scotland using daily data collected during the 2021 growing season (March–October). Examining these two different sites, one sheltered and one exposed to the open sea, we identified potentially new, important, and unexpected planktonic drivers of PGD and mortality (e.g., doliolids and appendicularians) and confirmed the significance of some established threats (e.g., hydrozoans and diatoms). We also explored delayed or “lagged” effects of plankton abundances on gill health and undertook a comparison of environmental DNA (eDNA) metabarcoding and microscopy in their ability to identify and quantify planktonic species. Our data highlight the diversity of planktonic threats to salmonid aquaculture as well as the importance of using both molecular and morphological approaches to detect these. There is now an urgent need to expand systematic longitudinal molecular and morphological approaches across multiple sites and over multiple years. The resultant catalogue of main biological drivers will enable early warning systems, new treatments, and, ultimately, a sustainable platform for future salmonid aquaculture in the marine environment.

Towards a Standardized Operating Procedure for eDNA‐Based Biomonitoring in Coastal Marine Salmon Aquaculture

ABSTRACTThe marine aquaculture industry and regulators are in the process of implementing environmental DNA (eDNA) metabarcoding of microbial communities for compliance monitoring. This requires standardization of sampling, laboratory, and data analysis protocols. Towards this goal, we in this study completed two further milestones using samples collected from two Scottish salmon farms: (i) We tested the effect of using two different PCR protocols (i.e., different DNA polymerases, master mixes, and annealing temperatures), which are frequently being used in eDNA biomonitoring of aquaculture installations, for the amplification of the taxonomic marker gene (V3‐V4 hypervariable region of the bacterial 16S rRNA gene). (ii) We quantified sampling background noise obtained from eDNA samples and statistically compared results with the sampling bias observed in macrofaunal samples from the same source sediments. We detected differences in bacterial community structures resulting from the performance of different PCR protocols, profoundly influencing the interpretation of biomonitoring results. Furthermore, we found that sampling‐induced errors for eDNA samples were similar to errors for macrofaunal samples collected according to compliance monitoring protocol (~25% variability in both cases). Finally, we showed that within‐grab variances of microbial community structures were in the same order of magnitude (less than 10× difference in all cases) as the one obtained from replicate grabs collected from the same locale (impact category). Based on our findings, we suggest using a consistent PCR protocol for biomonitoring efforts to improve the comparability of results, especially when different service providers are conducting the biomonitoring. We propose a sampling scheme to be considered in eDNA biomonitoring that includes taking three replicate grabs at each locale, with one replicate sample from each grab. This minimizes sampling‐induced errors and makes upcoming eDNA‐based monitoring results comparable with previous compliance monitoring results obtained from macrofaunal data.

Study on Pasir Lobster Enlargement (Panulirus homarus) to Improve Cultivation Productivity with Keong Bakau (Telescopium telescopium)

Abstract The potential of lobster in Indonesia is very high, the demand for lobster continues to increase every year, while the supply still utilizes the catch of fishermen. Lobster utilization in Indonesia is still low, therefore there must be sustainable cultivation in order to increase the quantity and quality of lobsters in Indonesia. One way to increase lobster enlargement is by feeding Keong Bakau. The purpose of this study is to determine and improve Lobster Pasir enlargement, including enlargement management, water quality management, and feed management with Keong Bakau. The study was conducted at the Lombok Marine Aquaculture Center, in Indonesia. The method used is a descriptive method with a quantitative approach. The feed used was Keong Bakau. The survival rate (SR) value reached 100%, the specific growth rate (SGR) value was 0.002%, and the FCR value was 23.82. The amount of feed given is sufficient for the needs of the lobster, the Keong Bakau used has chitosan which can help support the survival of the lobster. The average results of water quality include temperature (28.06oC), pH (7.07), DO (7.34 mg/l), Salinity (32.9 ppt), Turbidity (2.66 m), Phosphate (0.175 mg/l), Nitrite (0.002 mg/l), Nitrate (0.02 mg/l), and Ammonia (0.055 mg/l). DO values were slightly different from the optimal range due to the reduced intensity of vessels passing through the KJA. Keong Bakau has calcium which plays an important role in the formation of the exoskeleton in lobsters after the molting process.

Development of Reliable Male-Specific Molecular Markers for Genetic Sex Identification in Sea Cucumber Apostichopus japonicus.

Apostichopus japonicus is an important marine aquaculture species in China, with high nutritional and economic value. In A. japonicus, there is no obvious sexual dimorphism in external appearance, and sex differentiation primarily relies on the observation of mature gonads after dissection, which leads to difficulties in sex identification. The confusion in sex identification greatly reduces breeding efficiency in the sea cucumber industry. Therefore, developing a reliable sex-specific marker is crucial. In this study, we identified 586 male-specific sequences through whole-genome assembly and sequence alignment, but did not identify any female-specific sequences, inferring an XY-type sex determination system in sea cucumbers. We developed a set of male-specific molecular markers to establish an accurate, stable, and widely adaptable genetic sex identification technique for A. japonicus. The male-specific molecular markers were validated with 100% accuracy in sea cucumber populations from six different geographical regions in China. In conclusion, this study provides further evidence for the XY-type sex determination system in A. japonicus and establishes an effective genetic sex identification method for multi-geographic populations, which benefits future study on reproductive biology and has significant implications in sea cucumber aquaculture industry.

Solar-driven chloride activation via 3D oxygen-vacancy-rich TiO2 network photoanode for ultrafast and durable purification of saline wastewater

Photoelectrochemical chloride activation (PEC-Cl) is a promising and reagent-free strategy to treat saline organic wastewater by activation of chloride (Cl–) using sunlight. However, the low efficiency and Cl– corrosion of photoelectrode, and the limited mass transfer of pollutant hinder its application. Herein we successfully solve these challenges by developing porous oxygen-vacancy-rich TiO2 nanoneedle arrays (TiO2 NNs-r400) photoanode. Under illumination, the photoinduced holes in TiO2 NNs-r400 oxidize Cl– to reactive species (e.g., HOCl, Cl•, Cl2•− and ClO•), resulting in the degradation rate of tetracycline hydrochloride (HTC, 0.861 min−1) by TiO2 NNs-r400/PEC-Cl system is 2–3 orders of magnitude higher than the state-of-the-art. Experiments and computational analysis indicate that oxygen vacancies (Ovs) on TiO2 NNs-r400 promote the photocarriers separation efficiency and more importantly, facilitate Cl– adsorption with intermediary strength and reduce the energy barriers of Cl– oxidation. Furthermore, we design a continuous flow-through PEC reactor for TiO2 NNs-r400/PEC-Cl technology. The process exhibits 100% HTC degradation (TOC = 60.23%) for over 2000 h flow-through operation, which maintains high activity in the treatment marine aquaculture wastewater with nearly zero energy consumption by directly utilize natural sunlight. In the final effluent, the toxicity of almost all degradation intermediates is decreased, and the formation of total organic chlorine is low (17.2 µg L–1). This work provides insights into Cl– activation on Ov-rich photoanode and strategy for practical application of solar energy in efficient, sustainable and eco-friendly wastewater decontamination.

Identification and application of quality elements, indicators, and criteria for assessment of impact on habitats in marine Natura 2000 areas

The EU Habitat Directive adopted in 1992, requires member states of the European Union to protect species and habitats considered to be of ‘Community Interest’ and listed in annexes to the directive. The appropriate environmental assessment of “plans and projects” is an important part of the conservation process. Despite several amendments and guidelines supporting the implementation of the Habitat Directive, science based operational procedures, indicators, and impact criteria for assessing potential negative impacts on marine Natura 2000 areas are still lacking. The lack of a generic and operational methodology complicates the management of plans and projects with potential impact on marine Natura 2000 areas. In this study, generic methods for the assessment of marine aquaculture in the inner Danish waters in relation to Natura 2000 areas was developed and applied for assessment of nine existing marine fin fish farms, in accordance with the latest methodological guidance on the provisions of Article 6(3) and (4) of the Habitat Directive. The applied methodology is based on high resolution 3D hydrodynamic- and ecosystem modelling (MIKE by DHI), that describes the dynamical physical, chemical, and biogeochemical processes and changes of marine ecosystems in time and space. To our knowledge, this is the first study that formulates operational biological quality elements, key indicators, concrete and generic impact criteria, and assessment procedures for operational assessment across several distinct marine habitat types. The method represents a generic, operational, transparent, and science-based assessment tool, that simplifies management, and is widely applicable for quantification of environmental impacts from various marine activities and eutrophication related pressures across geographical zones and different marine habitat types in marine Natura 2000 areas.

Insights into different marine aquaculture infrastructures from a life cycle perspective

Aquaculture facilities represent an often-neglected process in environmental impact studies. This study focus on the environmental impact assessment of alternative net materials in Mediterranean marine aquaculture. A Life Cycle Assessment was conducted using primary and secondary data from specific databases and literature. Three baseline scenarios were compared: copper alloy net cages with 100 % of recycled material (CAN100), 75 % of recycled material (CAN75), and polyethylene net (PEN) System boundaries include manufacturing and disposal of cages, nets, and mooring system. The use and emissions of antifouling paints and CAN were considered. Sensitivity analysis of the most impacting sub-processes and Uncertainty analysis were also conducted. The use of CAN is advantageous in terms of environmental impact, but only considering a complete recyclability of the net at the end of its service life. Moreover, when considering a reduced service life of the PEN due to the detrimental effect of biofouling, the advantage of the CAN is even more evident. To counteract the negative effect of biofouling, copper-based antifouling paints are generally used in marine aquaculture. These products are a main environmental hotspot in PEN systems. Therefore, a higher consumption of such products could determine an environmental burden shifting from CAN to PEN ones. So far, CAN are not widespread in the aquaculture industry, mainly due to the high cost of initial investment compared to traditional PEN. Considering operational and environmental advantages, CAN cages could represent an affordable and resilient solution for aquaculture enhancing environmental, economic, and social performances of this industry.

Predicting weight dispersion in seabass aquaculture using Discrete Event System simulation and Machine Learning modeling

Marine aquaculture, particularly in the Mediterranean region, faces the challenge of minimizing growth dispersion, which has a direct impact on the production cycle, market value and sustainability of the sector. Conventional grading methods are resource intensive and potentially detrimental to fish health. The current study presented an innovative approach in predicting fish weight dispersion in European seabass (Dicentrarchus labrax) aquaculture. Seabass is one of the two major fish species cultivated on the Mediterranean coast, with a fattening cycle of 18–24 months. During this period, several grading operations are carried out to minimize growth dispersion. The intricate feed-fish-water system, characterized by complex interactions among feeding regimes, fish behavior, individual metabolism and environmental factors, is the focus of the study. The comprehensive, five-step methodology addresses this complexity. The process begins with a Discrete Event System (DES) model that simulates the feed-fish-water dynamics, taking into account individual fish metabolism. This is followed by the development of a surrogate machine learning (ML) regressor model, which is trained on DES simulation data to efficiently predict growth distribution. The model is then calibrated and customized for specific fish stocks and production tanks. The preliminary results from 21 tanks in two trials with European seabass (D. labrax) showed the effectiveness of the method. The results from the simulation models achieved a R2 of 99.9 % and a Mean Absolute Percentage Error (MAPE) of 1.1 % for the prediction of mean final weight and a R2 of 90.3 % with a MAPE of 8.1 % for the standard deviation of final weight. In summary, this study represents a significant advance in the planning and management of seabass aquaculture. Given the lack of effective prediction tools in the aquaculture industry, the proposed methodology has the potential to reduce risks and inefficiencies, thus possibly optimizing aquaculture practices by increasing sustainability and profitability.

Intermittent Detections of ISAV-HPR0 in a Salmon Recirculating Aquaculture System, and Implications for Sampling

Infectious salmon anemia virus (ISAV) is an important pathogen in global Atlantic salmon (Salmo salar L.) aquaculture. The existence of both non-pathogenic (ISAV-HPR0) and pathogenic (HPR-deleted ISAV) forms of the virus impacts hatchery management. In November 2016, fish tested positive for ISAV-HPR0 at the National Cold Water Marine Aquaculture Center in Maine. A cohort exposed to the fish testing positive for ISAV were lethally sampled over a 7-month period (February–August 2017). No positive samples were detected during this time. Additional testing aimed to determine the extent of the ISAV infections in the facility’s fish and to investigate the water sources as potential virus entry points. Fish testing was designed to detect 2% pathogen prevalence with 95% confidence (assuming diagnostic sensitivity of 85%). Over a three-year period, ISAV-HPR0 was detected in spawning fish annually and once in smolts. Repeat testing of smolts from the affected tank three weeks later failed to detect ISAV-HPR0. Over a one-year period of weekly or biweekly evaluation of the incoming water sources, ISAV was never detected. These findings suggest that ISAV-HPR0 infections in monitored hatchery populations can evade detection and that episodes of high prevalence of ISAV-HPR0 associated with spawning can be highly transient. In both cases, conventional surveillance based on recurrent testing of healthy populations may provide only a very limited indication of the HPR0 status. Instead, targeting surveillance to periods of physiological stress, such as spawning and smoltification, and adjusting the sample sizes to account for a related surge in prevalence, should enhance the detection capacity in hatchery settings while also reducing testing costs.

Distribution and geochemical speciation of metals in the sediments of marine aquaculture areas in Japan.

Metal contamination is a crucial environmental issue because of its persistence and toxicity, which can have deleterious effects on aquatic ecosystems. Coastal sediments serve as reservoirs for metals. Aquaculture is an important human activity in coastal areas; however, the actual status of metal distribution in these areas has not been well characterized. We investigated the distribution and geochemical speciation of metals in the sediments of the Japanese aquaculture areas of Shidugawa and Furue Bays. Total metals were generally in the order Zn > Cu > Ni > Cd > Pb and occurred at high levels at the sites in the inner parts and near the fish cages in the sampling areas. Pearson's correlations and principal component analysis results suggested that the metals in these aquaculture areas might originate from several sources, such as fish feces, fish feeds, corrosion of antifouling material residues, and local anthropogenic activities, including fertilizers and manures. Furthermore, metals were mainly in silts and fine sediments, associated with residual speciation, followed by organic fractions, oxides, and high fractions of exchangeable Cd. These results provide important insights into the accumulation of metals in sediments for better managing marine aquaculture in Japan.

Modeling embryo survival: Genetic and environmental influences on eye-up rate in a north American Atlantic salmon selective breeding program

Selective breeding programs improve target traits but can also unintentionally change genetically correlated traits in the selected strain. The U.S. Department of Agriculture–Agricultural Research Service National Cold Water Marine Aquaculture Center (NCWMAC) in Franklin, Maine maintains a North American Atlantic salmon selective breeding program focused on improving commercially important traits (e.g., carcass weight). However, the program has experienced a significant decline in the percent of eyed embryos over its 14 years of operation, leading to concerns that reproductive performance was being unintentionally changed by selection for the target traits. The aims of this study were to 1) model eye up success as a potentially heritable trait utilizing the recorded pedigree and 2) assess the relationship between eye-up rate and environmental conditions experienced by the broodstock. Over 14 years of data encompassing 1537 full-sib families produced by 1537 dams and 885 sires was analyzed. Counts of eyed embryos and carcass weight were analyzed with a linear multi-trait trait model that included maternal genetic effects and a spawn year effect to determine the strength of genetic and environmental influences on the eyed embryo rate. To investigate the environmental influences in more detail, we assessed the correlation between water quality parameters in the broodstock rearing system observed over the same 14-year time period and the estimated spawn year effects. There was small heritability of the direct genetic effect (0.059 ± 0.009) and the maternal genetic effect (0.039 ± 0.013). Comparatively, the proportion of phenotypic variance explained by the maternal environmental effect was moderate (0.165 ± 0.012). The genetic correlations between carcass weight and eye up rate were very small and had a large amount of uncertainty. The correlation between the direct genetic effects on eye-up and carcass weight was −0.0528 ± 0.1469 while the correlation between the maternal genetic effect on eye-up and the direct genetic effect on carcass weight was 0.2030 ± 0.1791. The correlation between maternal common environmental effects on the two traits was also low at 0.0676 ± −0.0804. The effect of spawn year was statistically significant (p < 0.01), and the values were negatively correlated with mean un-ionized ammonia (mg/L, −0.56, p = 0.04,), nitrate concentrations (mg/L r = −0.65, p = 0.01) and temperature (°C, r = −0.61, p = 0.02) experienced by the broodstock prior to spawning. Overall, the results suggest that the decrease in eyed embryos over time was not caused by inadvertent selection but instead due to increases in water temperature and/or nitrogenous waste concentrations in the broodstock rearing system. Further investigation of the mechanisms behind these apparent environmentally induced declines and potential mitigation measures to prevent decreases in eye-up rates are needed.

Synthesis of multinational marine aquaculture and clean energy co-location

Marine co-location, i.e., multiple fixed ocean activities operating in the same place and at the same time, can maximize the space- and resource-use efficiency in crowded seascapes. While interest grows, commercial use is nascent and the collective benefits or limitations of co-locating aquatic food and clean energy remains scattered throughout the literature. In this study, we synthesize multinational findings of co-location scientific publications (N = 102) to better understand the patterns and knowledge gaps at the co-located ocean food-energy nexus. We track and compare food (aquaculture) and energy (tidal, offshore wind, and wave) co-located ocean activities, noting the focus (e.g., ecological), motivation (e.g., impact/risk), and assessment type (e.g., modeling), as well as nine key metrics of interest (depth, distance from shore, aquaculture yield, etc.), mainly for aquaculture co-location. We found the number of annual co-location publications increased over time and space but are largely concentrated in the North Sea (n = 39). We also found about half of publications include aquaculture, one-third of publications report at least one metric – reporting aquaculture yield was particularly rare (n = 1) – and few studies focused on impact/risk (n = 7). However, conducting a targeted post-hoc evaluation of North Sea gray literature (N = 61), due to this region’s importance in the field, showed more coverage of impacts/risk (e.g., liability) and similar attention to aquaculture. Of the scientific papers that did report metrics, the ranges of depth and distance exceeded those reported for standalone sectors, indicating co-location could be facilitating a “push” of ocean activities into farther offshore and/or deeper exposed waters. Ultimately, while aquaculture is commonly cited in the co-location literature, the shortage of metrics, like aquaculture yield, and possible impact/risk evaluations – though gray literature can provide critical insights – emphasizes the need for knowledge sharing and modeling to address and explore the uncertainty, especially for co-located aquaculture production. This study provides a needed snapshot of marine co-location, particularly in emerging regions, highlighting gaps in understanding aquaculture-energy potential in the oceans.

Effect of temperature on growth, expression of growth regulating genes, and deformity development of juvenile European plaice (Pleuronectes platessa)

The flatfish European plaice is a demersal, temperate species and a candidate for marine aquaculture. To better understand growth and the mechanisms involved in growth regulation, juvenile plaice (initial mean weight ± SEM, 10.4 ± 0.1 g) were reared in triplicate rearing tanks at three different temperature: ambient (average of 8.6 °C), 12 °C and 16 °C, for 100 days. Interactions between growth, expression of growth regulating genes, and skeletal development were studied to determine optimal rearing conditions for juvenile plaice. Juvenile plaice grew fastest at 16 °C, followed by the 12 °C group. The condition factor was inversely correlated to increased temperatures and was highest in the 8.6 °C group. At the start of the experiment, 11% of the fish had vertebra deformities. Increasing temperature resulted in higher frequency and severity of malformations, and the 8.6 °C group had 8% less vertebra deformities at the end of the experiment compared to other two groups. The 12 °C and 16 °C groups had similar frequency of deformed fish, however, the 16 °C had more severe deformities, measured as number of deformed vertebrae per fish. Temperature affected gene transcript levels of ghr, igf-1, and igf-1r in muscle and liver tissue differently. Hepatic igf-1 transcript levels increased with increased growth and temperature. Muscular igf-1r transcript levels increased with increasing temperature in each sampling, indicating that igf-1r corresponded with muscular growth. Based on the present findings, a rearing temperature of 12 °C is recommended for on-growing of juvenile plaice.

Effects of Gene Alternative Splicing Events on Resistance to Cryptocaryonosis of Large Yellow Croaker (Larimichthys crocea).

Large yellow croaker (L. crocea) is a productive species in marine aquaculture with great economic value in China. However, the sustainable development of large yellow croaker is hampered by various diseases including cryptocaryonosis caused by Cryptocaryon irritans. The genetic regulation processes for cryptocaryonosis in large yellow croaker are still unclear. In this present study, we analyzed differential alternative splicing events between a C. irritans resistance strain (RS) and a commercial strain (CS). We identified 678 differential alternative splicing (DAS) events from 453 genes in RS and 719 DAS events from 500 genes in CS. A set of genes that are specifically alternatively spliced in RS was identified including mfap5, emp1, and trim33. Further pathway analysis revealed that the specifically alternative spliced genes in RS were involved in innate immune responses through the PRR pathway and the Toll and Imd pathway, suggesting their important roles in the genetic regulation processes for cryptocaryonosis in large yellow croaker. This study would be helpful for the studies of the pathogenesis of cryptocaryonosis and dissection of C. irritans resistance for L. crocea.

Physicochemical properties and immune enhancement activity of oligosaccharide fraction purified from biomass of green macro-algal Ulva prolifera

Ulva prolifera (U. prolifera), as the dominant species of green macro-algal bloom, caused great damage to marine aquaculture and economy. This study was carried out to find its industrial utilization ways by determination the structure characteristics and the immune enhancement effect of oligosaccharide fractions produced from this alga. The result indicated that oligosaccharide fraction of F3 showed the best immune enhancement activity via RAW 264.7 macrophages and zebrafish assays. Chemical and structural analysis indicated that F3 with 11.14%sulfate content was composed of rhamnose, xylose, and glucose in ratio of 77.11:16.33:6.56. NMR spectroscopy showed that F3 contained (1 → 4)-α-l-rhamnopyranose-3-SO3 and α-l-rhamnopyranose-3-SO3-(1 → 4)-β-D-xylopyranose, with sulfate groups located at C-3 of rhamnopyranose. The results of immune effect in vitro demonstrated that F3 increased the production of nitric oxide (NO) and prostaglandin E2 (PGE2) with up-regulation of inducible nitric oxide synthase (iNOS) and cyclooxygenase-2 (COX-2) expression. F3 also promoted the secretion of cytokines (TNF-α, IL-1β and IL-6) and activated the expression of mitogen-activated protein kinases (MAPK) and NF-κB signaling pathways. In vivo assay, F3 boosted the embryo survival rate and heart rate, as well as promoted the generation of NO and reactive oxygen species (ROS) in a dose-dependent manner. The novel structure and excellent activity in this study suggested that F3 could be the potential material for use as a natural immuno-enhancing agent in the biomedical and functional food industries.