Manure Storage Areas Research Articles

Hydrochemistry, water quality and health risk assessment of streams in Bismil plain, an important agricultural area in southeast Türkiye

In this study, the water quality of Ambar, Kuruçay, Pamuk and Salat streams, which are the important tributaries of the Tigris River in the Bismil Plain (Diyarbakır, Türkiye) was assessed using 19 physicochemical parameters. Except for a few exceptions, all parameters in the water samples taken from the streams were below the drinking water limit values. Kuruçay Stream had significantly higher TOC, Na+, NO3−, NO2−, Cl− and SO42− levels and lower DO levels than other streams (p < 0.05) due to sewage water discharges, animal manure storage areas near the stream and irrigation return flows. In all streams, Ca–HCO3 was dominant water type. Gibbs diagram indicated that rock weathering is the major factor controlling the hydrochemistry of the streams. According to the results of water quality index (WQI), all sampling stations of Ambar, Pamuk and Salat streams and K1 station of Kuruçay Stream had “good” quality water for drinking purposes, while K2 station of Kuruçay Stream had “poor” quality water. Irrigation indices (permeability index, sodium percentage, magnesium hazard, residual sodium carbonate, Kelley's ratio, sodium adsorption ratio and potential salinity) revealed that all water samples taken from the streams were suitable for irrigation. The water samples from Ambar, Pamuk and Salat streams were in the C2S1 (medium salinity and low alkalinity) category, while the samples from Kuruçay Stream were in the C2S1 and C3S1 (high salinity and low alkalinity) categories. Both hazard quotient and hazard index values of NO3–N, NO2–N and F− for children and adults were found below 1, indicating that adverse health effects are not expected from exposure to these contaminants via water ingestion and dermal contact. The findings of this study showed that the water quality status of Kuruçay Stream is worse as it receives large amounts of irrigation return flows compared to other streams.

Bayesian accuracy estimates of environmental sampling for determining herd paratuberculosis infection status and its association with the within-herd individual fecal culture prevalence in Québec dairies

The objectives of this retrospective analysis were to: 1) estimate the diagnostic sensitivity (Se) and specificity (Sp) of bacterial culture of environmental samples for determining Mycobacterium avium subsp. paratuberculosis (MAP) infection status in Québec dairies, using a Bayesian Latent Class Model (BLCM); and 2) determine the association between the number of positive environmental samples and the individual fecal culture (IFC) apparent and true MAP within-herd prevalence.Environmental and individual fecal samples were collected from 87 commercial dairy herds participating in previous research projects. Environmental samples included two composite samples of 20 g collected from different locations within each of the following sites: an area where manure from the majority of adult cattle accumulates, a manure storage area and another site of manure accumulation chosen by the veterinarian. Samples were cultured using the MGIT Para TB culture liquid media and the BACTEC MGIT 960 system. The Se and Sp of environmental sampling were estimated using a one-test-one-population BLCM. Herds were considered positive for environmental sampling if at least one out of the six samples collected was positive. The apparent and true IFC within-herd MAP prevalence estimates for each herd were obtained using a two-stage cluster BLCM, then merged in a single dataset with the environmental sample results. The association between the within-herd MAP prevalence results (apparent and true), and the number of positive environmental samples was assessed using a zero-inflated negative binomial (ZINB) model. In all BLCMs, median posterior estimates and 95 % Bayesian credible intervals (BCI) were obtained with OpenBUGS statistical freeware.Se and Sp of environmental sampling were 43.7 % (95 % BCI: 32.5−55.5) and 96.2 % (95 % BCI: 84.2−99.8), respectively. Overall, the number of positive environmental samples increased with the apparent and true MAP within-herd prevalence. The true prevalence was higher than the apparent prevalence for a given number of positive environmental samples. The probability of not observing a positive environmental sample decreased with the prevalence.Despite its imperfect accuracy, environmental sampling is an inexpensive and non-invasive sampling method to determine MAP infection status in tie-stall herds that can be used as a proxy to estimate the true within-herd prevalence. The absence of positive environmental samples in a single sampling visit is likely an indicator of a very low within-herd prevalence rather than being MAP exempt.

Phytoremediation of microbial contamination in soil by New Zealand native plants

Novel research has demonstrated that the roots of some bioactive plants - called pathogen phytoremediation plants - enhance die-off of pathogenic organisms in the soil. Strategic establishment of pathogen phytoremediation plants may reduce the transport of human pathogens to water sources. Such plantings could be used in riparian margins, as buffer strips to protect drinking water supplies, or block planting in ‘critical source areas’ of microbial contamination, such as grazing paddocks, organic waste – including sewage sludge - amended land, animal feedlots and housing facilities, and manure storage areas. This work aimed to investigate the antimicrobial activity of a range of New Zealand native plants known for their antimicrobial potential from previous research or through indigenous knowledge, and to assess if any of them could potentially be used for pathogen phytoremediation. Two laboratory screening experiments demonstrated the antimicrobial activity of Leptospermum scoparium, including the local variety swamp mānuka, Kunzea ericoides, Pseudowintera colorata, and Metrosideros robusta against three human pathogens and two indicator organisms. A greenhouse experiment showed a 90% reduction of Escherichia coli numbers in dairy shed effluent irrigated pots after 14 days in soils under swamp L. scoparium and M. robusta, compared with 45 days in soil under Lolium perenne. The pH in the soil under swamp L. scoparium and M. robusta was significantly lower than under L. perenne, which could partially explain the faster E. coli reduction.

Characterization of odorous pollution and health risk assessment of volatile organic compound emissions in swine facilities

The odor pollution and health risk caused by intensive livestock buildings are a public concern. In this study, the concentration, odor pollution, and health risk from volatile organic compounds (VOCs) released from different locations on a swine farm (swine nursery house, fattening swine house, manure storage, plant boundary and upwind locations) in different seasons (spring, summer, and fall) were evaluated quantitatively. The average VOC concentrations were 125.5, 1504.7, and 1698.5 μg/m3 in spring, summer, and winter, respectively. The total odor activity value (OAVSUM) of manure storage was the highest, with methanethiol, dimethyl sulfide (DMS), and H2S as the major contributors. Cumulative noncarcinogenic emissions exceeded the threshold in summer at all locations, except at the plant boundary and upwind locations. Furthermore, the cumulative carcinogenic risk threshold was also exceeded at the fattening swine house and manure storage area during the summer. Therefore, to protect farm staff working near the animal housing facilities, special attention should be paid to minimize the odorous nuisance and noncarcinogenic and carcinogenic risks.

The prevalence of Campylobacter species in broiler flocks and their environment: assessing the efficiency of chitosan/zinc oxide nanocomposite for adopting control strategy.

There is a growing trend to implement biosecurity measures in small commercial broiler flocks and trying to replace ineffective antimicrobial with alternative materials to interevent a strategy for the control of Campylobacter bacteria in these farms. This study was designed to determine the prevalence rate of Campylobacter spp. in broiler flocks and their environment. Thereafter, assess the efficiency of chitosan, zinc oxide nanoparticles (ZnO NPs), and chitosan/ZnO NPs composite against Campylobacter strains to adopt a novel control strategy based on the ability to use those nanocomposites. A total of 220 samples were collected from broiler flocks, their environment, and farm attendants that direct contact with birds. All samples were subjected to microbiological investigation for isolation, then molecular identification of bacteria using PCR. ZnO NPs and chitosan/ZnO NPs composite were synthesized then characterized by transmission electron microscopy (TEM), scanning electron microscopy (SEM), Fourier-transform infrared spectrum (FT-IR), and X-ray diffraction (X-RD). The efficiency of testing compounds was examined against 30 strains of Campylobacter coli (C. coli) to determine the minimum inhibitory concentration (MIC) and minimum bactericidal concentration (MBC). The highest percentages of C. coli were isolated from the manure storage area, and broiler litter followed by flies, and feeders (66.7, 53.3, 40.0, and 33.3%, respectively). Both chitosan/ZnO NPs and ZnO NPs at a concentration of 0.5 μg/mL and 1.5 μg/mL, respectively showed complete efficiency (100%) against C. coli compared with chitosan compound. In conclusion, manure storage area and broiler litter represented the main reservoir of Campylobacter bacterial contaminant followed by flies in broiler poultry farms. Chitosan/ZnO NPs composite can be used in any biosecurity program of poultry farms as an alternative to ineffective antimicrobial agents.

Short communication: Evaluation of sampling socks for detection of Mycobacterium avium ssp. paratuberculosis on dairy farms

Mycobacterium avium ssp. paratuberculosis (MAP) causes Johne’s disease, a production-limiting disease in cattle. Detection of infected herds is often done using environmental samples (ES) of manure, which are collected in cattle pens and manure storage areas. Disadvantages of the method are that sample accuracy is affected by cattle housing and type of manure storage area. Furthermore, some sampling locations (e.g., manure lagoons) are frequently not readily accessible. However, sampling socks (SO), as used for Salmonella spp. testing in chicken flocks, might be an easy to use and accurate alternative to ES. The objective of the study was to assess accuracy of SO for detection of MAP in dairy herds. At each of 102 participating herds, 6 ES and 2 SO were collected. In total, 45 herds had only negative samples in both methods and 29 herds had ≥1 positive ES and ≥1 positive SO. Furthermore, 27 herds with ≥1 positive ES had no positive SO, and 1 herd with no positive ES had 1 positive SO. Bayesian simulation with informative priors on sensitivity of ES and MAP herd prevalence provided a posterior sensitivity for SO of 43.5% (95% probability interval=33–58), and 78.5% (95% probability interval=62–93) for ES. Although SO were easy to use, accuracy was lower than for ES. Therefore, with improvements in the sampling protocol (e.g., more SO per farm and more frequent herd visits), as well as improvements in the laboratory protocol, perhaps SO would be a useful alternative for ES.

Transport of three veterinary antimicrobials from feedlot pens via simulated rainfall runoff

Veterinary antimicrobials are introduced to wider environments by manure application to agricultural fields or through leaching or runoff from manure storage areas (feedlots, stockpiles, windrows, lagoons). Detected in manure, manure-treated soils, and surface and ground water near intensive cattle feeding operations, there is a concern that environmental contamination by these chemicals may promote the development of antimicrobial resistance in bacteria. Surface runoff and leaching appear to be major transport pathways by which veterinary antimicrobials eventually contaminate surface and ground water, respectively. A study was conducted to investigate the transport of three veterinary antimicrobials (chlortetracycline, sulfamethazine, tylosin), commonly used in beef cattle production, in simulated rainfall runoff from feedlot pens. Mean concentrations of veterinary antimicrobials were 1.4 to 3.5 times higher in surface material from bedding vs. non-bedding pen areas. Runoff rates and volumetric runoff coefficients were similar across all treatments but both were significantly higher from non-bedding (0.53Lmin−1; 0.27) than bedding areas (0.40Lmin−1; 0.19). In keeping with concentrations in pen surface material, mean concentrations of veterinary antimicrobials were 1.4 to 2.5 times higher in runoff generated from bedding vs. non-bedding pen areas. Water solubility and sorption coefficient of antimicrobials played a role in their transport in runoff. Estimated amounts of chlortetracycline, sulfamethazine, and tylosin that could potentially be transported to the feedlot catch basin during a one in 100-year precipitation event were 1.3 to 3.6ghead−1, 1.9ghead−1, and 0.2ghead−1, respectively. This study demonstrates the magnitude of veterinary antimicrobial transport in feedlot pen runoff and supports the necessity of catch basins for runoff containment within feedlots.

Environmental contamination with Mycobacterium avium subsp. paratuberculosis in endemically infected dairy herds

Environmental contamination with Mycobacterium avium subsp. paratuberculosis (MAP) is thought to be one of the primary sources of infection for dairy cattle. The exact link between fecal shedding of MAP by individual cows and environmental contamination levels at the herd level was explored with a cross-sectional analysis of longitudinally collected samples on 3 dairy farms. Composite samples from multiple environmental sites in 3 commercial dairy herds in the Northeast US were cultured quarterly for MAP, providing 1131 samples (133 (11.8%) were culture-positive), and all adult animals in the herds were tested biannually by fecal culture (FC), for 6 years. Of the environmental sites sampled, manure storage areas and shared alleyways were most likely to be culture-positive. Environmental sample results were compared to FC results from either the concurrent or previous sampling date at both the herd and the pen level. At the herd level, a 1 log unit increase in average fecal shedding increased the odds of a positive non-pen environmental sample by a factor of 6 and increased the average amount of MAP in non-pen samples by 2.9 cfu/g. At the pen level, a 1 log unit increase in average fecal shedding in the pen increased the odds of a positive environment by a factor of 2.4 and the average amount of MAP was increased by 3.5 cfu/g. We were not able to model the relationship between non-pen environmental sample status and the distance between shedding animals and the sample's location, and neighboring pens did not significantly affect the results of the pen-level analysis. The amount of MAP in pen-level samples and the probability of a pen testing positive for MAP were both positively but non-significantly correlated with the number of animals in the pen shedding >30 cfu/g of MAP. At least 6 environmental samples met the criteria for the U.S. Voluntary Bovine Johne's Disease Control Program on 47 of the 72 sampling dates; of these, 19 of the 47 FC-positive sampling dates were positive by the 6-sample environmental testing method, resulting in a herd sensitivity of 0.40 (95% CI: 0.26–0.54). None of the 3 FC-negative sampling dates produced positive environmental samples. Although environmental sampling can be used as a tool in understanding the level of MAP infection in a herd or pen, it did not appear to be a sensitive diagnostic method for herd positivity in these low prevalence herds, and its use may require caution.

Prevalence of Michigan dairy herds infected with Mycobacterium avium subspecies paratuberculosis as determined by environmental sampling

A cross-sectional, stratified random survey of Michigan dairy herds was conducted to estimate the prevalence of herds infected with Mycobacterium avium paratuberculosis (MAP), the causative agent of Johne's disease, in Michigan using targeted environmental sampling. One pooled sample each from the primary manure storage area and a high-traffic common cow area from each herd was collected and cultured for MAP using the ESP® culture system II. A herd was classified as positive if at least one sample was culture positive for MAP. State, agricultural district, and herd size stratum prevalence were calculated. Information on past MAP testing and cattle purchase history was collected, and logistic regression was performed to determine their importance to the MAP status of the herd. One hundred twenty-seven herds were contacted, and 94 agreed to participate in the study. The environment of 38 (40.4%) herds cultured positive for MAP. MAP was found in all herds (n=15) with greater than 200 lactating cows. Herds that had tested for MAP or purchased cattle in the previous 5 years were 4.6 and 3.1 times, respectively, more likely to be infected than herds that had not. MAP continues to be prevalent on Michigan dairy farms, especially those with greater than 200 lactating cows. The environmental sampling protocol used in this study is an economically attractive alternative for monitoring herd level prevalence and the progress of Johne's disease control programs at the state or national level. Implementation of such a program would aid states in monitoring Johne's control program progress, and guide changes over time.

The Development of Industry-Specific Odor Impact Criteria for Feedlots Using Models

Emissions from feedlot operations are known to vary by environmental conditions and few if any techniques or models exist to predict the variability of odor emission rates from feedlots. The purpose of this paper is to outline and summarize unpublished reports that are the result of a collective effort to develop industry-specific odor impact criteria for Australian feedlots. This effort used over 250 olfactometry samples collected with a wind tunnel and past research to develop emission models for pads, sediment basins, holding ponds, and manure storage areas over a range of environmental conditions and tested using dynamic olfactometry. A process was developed to integrate these emission models into odor dispersion modeling for the development of impact criteria. The approach used a feedlot hydrology model to derive daily feedlot pad moisture, temperature, and thickness. A sub-model converted these daily data to hourly data. A feedlot pad emissions model was developed that predicts feedlot pad emissions as a function of temperature, moisture content, and pad depth. Emissions from sediment basins and holding ponds were predicted using a basin emissions model as a function of days since rain, inflow volume, inflow ratio (pond volume), and temperature. This is the first attempt to model all odor source emissions from a feedlot as variable hourly emissions on the basis of climate, management, and site-specific conditions. Results from the holding pond, sediment basin, and manure storage emission models performed well, but additional work on the pad emissions model may be warranted. This methodology mimics the variable odor emissions and odor impact expected from feedlots due to climate and management effects. The main outcome of the work is the recognition that an industry-specific odor impact criterion must be expressed in terms of all of the components of the assessment methodology.

Temporal analysis of groundwater nitrate concentrations from wells in Prince Edward Island, Canada: application of a linear mixed effects model

Changes in nitrate concentration in groundwater from wells in Prince Edward Island, Canada were investigated over time using two datasets. Temporal trends in groundwater nitrate concentrations were assessed annually during 1981–1996 (1,299 observations), and both seasonally and monthly during 1988–1991 (1,868 observations). Data were analysed using linear mixed models with random effects and correlation structures. The average nitrate concentration in the monthly dataset was 3.99 mg/L as NO3–N, with January, May, and November concentrations being higher (p = 0.018). A seasonal effect was present when season was combined with land use type in an interaction term (p = 0.004). Wells located in agricultural areas had greater nitrate concentrations than urban areas, which in turn, had greater values than low human-impact areas. Row-cropped areas had higher groundwater nitrate concentrations in the summer, whereas manure storage areas were higher in the spring and autumn. Nitrate in groundwater in areas with low human impact and with centralized sewage disposal infrastructure remained relatively low and stable throughout the seasons. There was no significant annual trend (p = 0.954), but for individual sites, 9.6% significantly increased in nitrate concentration over time, and 6.6% significantly decreased over time.

The Distribution of Mycobacterium avium ssp. paratuberculosis in the Environment Surrounding Minnesota Dairy Farms

The objective of this study was to characterize the distribution of Mycobacterium paratuberculosis (Map) in the environment of infected and uninfected Minnesota dairy farms. Eighty herds known to be infected from Minnesota's Johne's Disease Control Program (JDCP) and 28 herds known to be uninfected from Minnesota Voluntary Johne's Disease Herd Status Program (VJDHSP) were sampled. Fecal samples from up to 100 cows in each herd were cultured in pools of 5 cows. Two environmental samples were obtained from each farm from various locations. All samples were tested using bacterial culture for Map. Eighty percent of the JDCP herds had at least one positive pool. Environmental samples were cultured positive in 78% of the JDCP herds. Two (7%) of the VJDHSP herds had one positive pool, and one herd had one positive environmental sample. Environmental samples were cultured positive in cow alleyways (77% of the herds), manure storage (68%), calving area (21%), sick cow pen (18%), water runoff (6%), and postweaned calves areas (3%). There was an association between maximum level of colonies per tube from cow alleyways and manure storage and fecal pool prevalence. Herds with both areas cultured negative were estimated to have 0.3 to 4% fecal pool prevalence. Herds with both areas having a heavy load of bacteria were estimated to have 53 to 73% fecal pool prevalence. The study results indicate that targeted sampling of cow alleyways and manure storage areas appears to be an alternative strategy for herd screening and Johne's infection status assessment and for estimating herd fecal prevalence.

Nutrient losses to soil from field storage of solid poultry manure

The study was done to quantify the effect of uncovered field storage of solid poultry manure in south coastal British Columbia on a site where solid Turkey manure was stored uncovered each fall and winter for approximately 6 yr. The soil was sampled to 370 cm depth in a transect with six sampling locations: two in the manure storage area, and two on either side of the manure storage area. The soil was analyzed for the concentrations of total organic C, total Kjeldahl N, ammonium, nitrate, K, P, Mg, and Na in addition to soil pH and electrical conductivity. The mass of nutrients to 370 cm depth was 39 700 and 330 kg NH4+–N ha−1, 500 and 480 kg NO3−–N ha−1, 36 400 and 1440 kg K ha−1, 12 100 and 2190 kg P ha−1, 3150 and 1140 kg Mg ha−1 and 9850 and 975 kg Na ha−1 for the manure storage and non-storage sampling locations, respectively. The depth weighted average soil pH was 8.4 and 4.7 and average soil electrical conductivity was 3.3 and 0.3 dS m−1 for the manure storage and non-storage sampling locations, respectively. The lack of an increase in soil nitrate concentration in the manure storage area was attributed to concentrations of free ammonia in soil solution toxic to nitrifying bacteria. The results highlight the high potential for nutrient loss from uncovered fall and winter field storage of poultry manure in south coastal British Columbia. Key words: Turkey manure, soluble C, soil ammonium, free ammonia, electrical conductivity

Odor control for livestock systems

Odors are generated primarily as the result of manure storage but also result from animal housing and manure application. Effective odor control is dependent upon implementation of strategies that are complementary to management practices. Some systems use a deep pit or a holding tank for manure storage. In such systems, little or no biological processing occurs, and they are therefore considered high-load systems. In systems where biological processing occurs to a great extent, such as in anaerobic digesters or lagoons, the system would be termed a low-load system. Odor control strategies for manure storage areas, such as solids separation and additives, are best suited for low-load systems, whereas covers and biofilters provide the best results for high-load systems. Strategies that reduce nutrient production, such as dietary restriction of nutrients, are well-suited for all types of manure storage systems. To comply with current or pending odor control regulations, it is imperative that producers be provided with sound recommendations of odor control strategies.

NITROGEN MOVEMENT NEAR SURFACE MANURE STORAGES

No evidence of serious groundwater contamination by excess nutrients from solid manure storage areas that had been used for over 30 yr at the Experimental Farm, Ottawa was found in an investigation that was carried out over a period of 4 yr. One storage area was on a concrete base and the other was located on a gravel base. The water table was usually above the 275-cm depth at both sites. Two unused shallow dug wells less than 250 m from the storage areas were not contaminated by nitrate, ammonium or phosphate. Water from piezometers installed at 275- and 425-cm depths near the gravel base storage area was always low in nitrate and ammonium, but sometimes appreciable levels of nitrate were found in water from a 122-cm deep piezometer. Water from piezometers installed at 122- and 275-cm depths near the concrete base storage area usually contained nitrate and ammonium. Water from piezometers installed 213 and 241 m from the storage areas in the direction of groundwater flow contained little nitrate or ammonium. The conditions prevailing in the area and the variation in the nitrate content of the groundwater during the seasons suggested that much of the nitrate originating from the storage areas was denitrified at or near the water table.