Manganese-reducing Bacteria Research Articles

Biogeochemical mechanisms of iron (Fe) and manganese (Mn) in groundwater and soil profiles in the Zhongning section of the Weining Plain (northwest China)

High levels of Iron (Fe) and manganese (Mn) in soils may contribute to secondary contamination of groundwater. However, there is limited understanding of the cycling mechanisms of Fe and Mn in groundwater and soil. This study aimed to investigate the biogeochemical processes constituting the Fe and Mn cycle by combining hydrochemistry, sequential extraction and microbiological techniques. The results indicated a similar vertical distribution pattern of Fe and Mn, with lower levels of the effective form (EFC-Fe/Mn) observed at the oxygenated surface, increasing near the groundwater table and decreasing below it. Generally, there was a tendency for accumulation above the water table, with Mn exhibiting a higher release potential compared to Fe. Iron‑manganese oxides (Ox-Fe/Mn) dominated the effective forms, with Fe and Mn in the soil entering groundwater through the reduction dissolution of Ox-Fe/Mn and the oxidative degradation of organic matter or sulfide (OM-Fe/Mn). Correlation analysis revealed that Fe and Mn tend to accumulate in media with fine particles and high organic carbon (TOC) contents. 16S rRNA sequencing analysis disclosed significant variation in the abundance of microorganisms associated with Fe and Mn transformations among unsaturated zone soils, saturated zone media and groundwater, with Fe/Mn content exerting an influence on microbial communities. Furthermore, functional bacterial identification results from the FAPROTAX database show a higher abundance of iron-oxidizing bacteria (9.3 %) in groundwater, while iron and manganese-reducing bacteria are scarce in both groundwater and soil environments. Finally, a conceptual model of Fe and Mn cycling was constructed, elucidating the biogeochemical processes in groundwater and soil environments. This study provides a new perspective for a deeper understanding of the environmental fate of Fe and Mn, which is crucial for mitigating Fe and Mn pollution in groundwater.

Production of Manganese Oxide Nanoparticles by Shewanella Species.

Several species of the bacterial genus Shewanella are well-known dissimilatory reducers of manganese under anaerobic conditions. In fact, Shewanella oneidensis is one of the most well studied of all metal-reducing bacteria. In the current study, a number of Shewanella strains were tested for manganese-oxidizing capacity under aerobic conditions. All were able to oxidize Mn(II) and to produce solid dark brown manganese oxides. Shewanella loihica strain PV-4 was the strongest oxidizer, producing oxides at a rate of 20.3 mg/liter/day and oxidizing Mn(II) concentrations of up to 9 mM. In contrast, S. oneidensis MR-1 was the weakest oxidizer tested, producing oxides at 4.4 mg/liter/day and oxidizing up to 4 mM Mn(II). Analysis of products from the strongest oxidizers, i.e., S loihica PV-4 and Shewanella putrefaciens CN-32, revealed finely grained, nanosize, poorly crystalline oxide particles with identical Mn oxidation states of 3.86. The biogenic manganese oxide products could be subsequently reduced within 2 days by all of the Shewanella strains when culture conditions were made anoxic and an appropriate nutrient (lactate) was added. While Shewanella species were detected previously as part of manganese-oxidizing consortia in natural environments, the current study has clearly shown manganese-reducing Shewanella species bacteria that are able to oxidize manganese in aerobic cultures. Members of the genus Shewanella are well known as dissimilatory manganese-reducing bacteria. This study shows that a number of species from Shewanella are also capable of manganese oxidation under aerobic conditions. Characterization of the products of the two most efficient oxidizers, S. loihica and S. putrefaciens, revealed finely grained, nanosize oxide particles. With a change in culture conditions, the manganese oxide products could be subsequently reduced by the same bacteria. The ability of Shewanella species both to oxidize and to reduce manganese indicates that the genus plays a significant role in the geochemical cycling of manganese. Due to the high affinity of manganese oxides for binding other metals, these bacteria may also contribute to the immobilization and release of other metals in the environment.

Three manganese oxide-rich marine sediments harbor similar communities of acetate-oxidizing manganese-reducing bacteria

Dissimilatory manganese reduction dominates anaerobic carbon oxidation in marine sediments with high manganese oxide concentrations, but the microorganisms responsible for this process are largely unknown. In this study, the acetate-utilizing manganese-reducing microbiota in geographically well-separated, manganese oxide-rich sediments from Gullmar Fjord (Sweden), Skagerrak (Norway) and Ulleung Basin (Korea) were analyzed by 16S rRNA-stable isotope probing (SIP). Manganese reduction was the prevailing terminal electron-accepting process in anoxic incubations of surface sediments, and even the addition of acetate stimulated neither iron nor sulfate reduction. The three geographically distinct sediments harbored surprisingly similar communities of acetate-utilizing manganese-reducing bacteria: 16S rRNA of members of the genera Colwellia and Arcobacter and of novel genera within the Oceanospirillaceae and Alteromonadales were detected in heavy RNA-SIP fractions from these three sediments. Most probable number (MPN) analysis yielded up to 10(6) acetate-utilizing manganese-reducing cells cm(-3) in Gullmar Fjord sediment. A 16S rRNA gene clone library that was established from the highest MPN dilutions was dominated by sequences of Colwellia and Arcobacter species and members of the Oceanospirillaceae, supporting the obtained RNA-SIP results. In conclusion, these findings strongly suggest that (i) acetate-dependent manganese reduction in manganese oxide-rich sediments is catalyzed by members of taxa (Arcobacter, Colwellia and Oceanospirillaceae) previously not known to possess this physiological function, (ii) similar acetate-utilizing manganese reducers thrive in geographically distinct regions and (iii) the identified manganese reducers differ greatly from the extensively explored iron reducers in marine sediments.

Microbial Populations of the River-Recharged Fredericton Aquifer

The City of Fredericton, New Brunswick, Canada obtains its water from the Saint John River-recharged Fredericton aquifer. Water quality improves as it flows from the river into the aquifer in a process called bank filtration. Microorganisms contribute to water quality improvements during bank filtration by removing organic carbon. In the Fredericton aquifer, microbially catalyzed reductive dissolution of manganese oxide minerals negatively affects water quality. Aerobic and anaerobic microorganisms were cultured from Fredericton aquifer production well water, from associated bedrock groundwater, and from Saint John River sediment core and sediment groundwater samples. Aerobes were the largest culturable groups in all samples. The ratio of aerobes to other microbial groups, i.e., those reducing nitrate, Mn4 +, Fe3 +, or sulfate, did not vary significantly along the water flow path from the river to the aquifer. Analysis of microbial community composition along the flow path indicated an essentially identical community except in the immediate vicinity of the aquifer. This is in agreement with the absence of macroscale redox zones in the sediment below the Saint John River as determined by groundwater geochemical data. Bacteria isolated from groundwater samples, identified by 16S ribosomal RNA gene sequencing, were α -, β -, γ -, and δ -Proteobacteria, Actinobacteria, and Firmicutes. In contrast to groundwater samples, the majority of bacteria isolated from sediments were γ -Proteobacteria. Numbers of manganese-reducing bacteria, including Aeromonas spp., were small, however Mn4 + reduction ability was widespread in bacteria enriched and isolated with other electron acceptors. The diverse Fredericton aquifer microbial community likely uses manganese oxide minerals as a sink for electrons derived from organic carbon oxidation.

Salt marsh pore water geochemistry does not correlate with microbial community structure

Spatial and temporal trends in pore water geochemistry and sediment microbial community structure are compared at three intertidal sites of a saltmarsh on Sapelo Island, GA. The sites include a heavily bioturbated, unvegetated creek bank, a levee with dense growth of Spartina alterniflora, and a more sparsely vegetated ponded marsh site. The redox chemistry of the pore waters ranges from sulfide-dominated at the ponded marsh site to suboxic at the creek bank site. At the three sites, the vertical redox stratification of the pore waters is more compressed in summer than in winter. The trends in redox chemistry reflect opposing effects of sediment respiration and pore water irrigation. Intense and deep burrowing activity by fiddler crabs at the creek bank site results in the efficient oxidation of reduced byproducts of microbial metabolism and, hence, the persistence of suboxic conditions to depths of 50 cm below the sediment surface. Increased supply of labile organic substrates at the vegetated sites promotes microbial degradation processes, leading to sharper redox gradients. At the levee site, this is partly offset by the higher density and deeper penetration of roots and macrofaunal burrows. Surprisingly, the microbial community structure shows little correlation with the variable vertical redox zonation of the pore waters across the saltmarsh. At the three sites, the highest population densities of aerobic microorganisms, iron- plus manganese-reducing bacteria, and sulfate reducers coexist within the upper 10 cm of sediment. The absence of a clear vertical separation of these microorganisms is ascribed to the high supply of labile organic matter and intense mixing of the topmost sediment via bioturbation.

Manganese reduction by microbes from oxic regions of the lake vanda (Antarctica) water column

Depth profiles of metals in Lake Vanda, a permanently ice-covered, stratified Antarctic lake, suggest the importance of particulate manganese oxides in the scavenging, transport, and release of metals. Since manganese oxides can be solubilized by manganese-reducing bacteria, microbially mediated manganese reduction was investigated in Lake Vanda. Microbes concentrated from oxic regions of the water column, encompassing a peak of soluble manganese [Mn(II)], reduced synthetic manganese oxides (MnO2) when incubated aerobically. Pure cultures of manganese-reducing bacteria were readily isolated from waters collected near the oxic Mn(II) peak. Based on phylogenetic analysis of the 16S rRNA gene sequence, most of the isolated manganese reducers belong to the genus Carnobacterium. Cultures of a phylogenetically representative strain of Carnobacterium reduced synthetic MnO2 in the presence of sodium azide, as was seen in field assays. Unlike anaerobes that utilize manganese oxides as terminal electron acceptors in respiration, isolates of the genus Carnobacterium reduced Mn(IV) via a diffusible compound under oxic conditions. The release of adsorbed trace metals accompanying the solubilization of manganese oxides may provide populations of Carnobacterium with a source of nutrients in this extremely oligotrophic environment.

Manganese flux associated with dissolved and suspended manganese forms in Lake Fukami-ike

Redissolved, particulate and sedimentary managanese were studied in the anoxic hypolimnion of the small monomictic Lake Fukami-ike in central Japan. The amounts of particulate and dissolved manganese in the water column were observed. The release of dissolved managanese starts gradually beginning in March. DMn reaches especially high levels of 93 mgMn m −2 d −1 from the end of May to the end of June calculated from the gradient of a regression formula for the daily change in DMn. The rate of accumulated PMn is 0.64 mgMn m −2 d −1 from the end of July calculated from the gradient of a regression formula for the daily change in PMn. An accumulation of PMn and an associated decrease in dissolved organic carbon (DOC) were observed at the transition zone of oxic and anoxic layers. These facts seem to suggest that the DOC decrease involves the consumption of DOC as an electron donor by bacterial catalysis for the reduction of MnO 2. The upward and downward DOC fluxes, 0.320 mmolC m −2 d −1, were calculated by the mean gradient values of the upward and downward DOC concentrations. The mean DOC flux was calculated by both the mean gradient DOC and the vertical diffusion coefficient (0.0304 m −2 d −1). Manganese-reducing bacteria could contribute as much as 24% to the DOC decrease in the oxic and anoxic layers, considering bacterial assimilation efficiency (64%). Vertical diffusion Mn flux from the interstitial water to the hypolimnion is then assumed to be 2 mgMn m −2 d −1. Mn for the vertical eddy diffusion flux, the vertical diffusion flux from interstitial water of the bottom sediment, the sinking flux and microbiological Mn flux were obtained, and the biogeochemical managanese cycle in Lake Fukami-ike was calculated. DMn flux in the oxic and anoxic layers by manganese-reducing bacteria is 0.004 gMn m −2 d −1, a value corresponding to 10% of DMn flux.

Microbial diversity in uranium mine waste heaps

Two different uranium mine waste heaps near Ronneburg, Thuringia, Germany, which contain the remains of the activity of the former uranium-mining Soviet-East German company Wismut AG, were analyzed for the occurrence of lithotrophic and chemoorganotropic leach bacteria. A total of 162 ore samples were taken up to a depth of 5 m. Cell counts of ferrous iron-, sulfur-, sulfur compound-, ammonia-, and nitrite-oxidizing bacteria were determined quantitatively by the most-probable-number technique. Sulfate-, nitrate-, ferric iron-, and manganese-reducing bacteria were also detected. In addition, the metabolic activity of sulfur- and iron-oxidizing bacteria was measured by microcalorimetry. Generally, all microorganisms mentioned above were detectable in the heaps. Aerobic and anaerobic microorganisms thrived up to a depth of 1.5 to 2 m. Up to 99% of Thiobacillus ferrooxidans cells, the dominant leaching bacteria, occurred to this depth. Their numbers correlated with the microbial activity measurements. Samples below 1.5 to 2 m exhibited reduced oxygen concentrations and reduced cell counts for all microorganisms.

Isolation and identification of manganese-reducing bacteria and estimates of microbial Mn(IV)-reducing potential in the Black Sea

During the summer of 1988, profiles of major and minor nutrients in the western and central basins of the Black Sea showed a pronounced suboxic zone in which could be seen distinct zones of nitrate, manganese and iron reduction. Enrichment culture techniques, used to determine relative levels of microbial Mn(IV) and Fe(III) reduction potential, indicated very high levels of iron-reducing potential throughout the suboxic zone, and high levels of Mn(IV)-reducing potential in both the nitrate reduction (55 m) and the Mn(IV) reduction (85 m) zones. Bacteria were also directly isolated from various depths in the water column and tested for their ability to reduce Mn(IV). Using these direct techniques, the major group of organisms isolated from the 80–90 m (Mn reduction) zone were in the genus Shewanella, accounting for up to 20–50% of the total bacterial viable counts, and up to 1–5 × 10 5 bacteria per ml. At other depths, there were fewer Mn(IV)-reducing bacteria, and those that were found were in different taxonomic groups, including Pseudomonas spp., Bacillus spp., and some unidentified Gram-negative rods and coccobacilli. All of these bacteria were respiratory bacteria, and many were capable of both Fe(III) and Mn(IV) reduction.

In situ stimulation of bacterial sulfate reduction in sulfate-limited freshwater lake sediments

By adding sulfate in the form of solid gypsum, it was possible to transform in situ a predominantly methanogenic sediment ecosystem into a sulfate-reducing one. The concentrations of sulfate, sulfide, methane, acetate, propionate, soluble iron, and manganese were determined in the porewater before and after the transition. Although sulfate was no longer limiting, acetate and propionate continued to accumulate and reached much higher concentrations than under sulfate-limited conditions. Metabolic activities of fermenting bacteria and of sulfate reducers, which belong to the group that incompletely oxidizes organic material, might be responsible for the increased production of volatile fatty acids. The elevated concentrations of soluble Fe(II)2+ and Mn(II)2+ observed in the porewater stem from iron and manganese compounds which may be reduced chemically by hydrogen sulfide and other microbially produced reducing agents or directly through increased activities of the iron and manganese reducing bacteria. In the horizon with high sulfate-reducing activities the methane concentrations in the porewater were lower than in non-stimulated sediment regions. The shape of the concentration depth profile indicates methane consumption through sulfate reducing processes. The in situ experiment demonstrates the response of a natural microbial ecosystem to fluctuations in the environmental conditions.

In situ stimulation of bacterial sulfate reduction in sulfate-limited freshwater lake sediments

By adding sulfate in the form of solid gypsum, it was possible to transform in situ a predominantly methanogenic sediment ecosystem into a sulfate-reducing one. The concentrations of sulfate, sulfide, methane, acetate, propionate, soluble iron, and manganese were determined in the porewater before and after the transition. Although sulfate was no longer limiting, acetate and propionate continued to accumulate and reached much higher concentrations than under sulfate-limited conditions. Metabolic activities of fermenting bacteria and of sulfate reducers, which belong to the group that incompletely oxidizes organic material, might be responsible for the increased production of volatile fatty acids. The elevated concentrations of soluble Fe(II) 2+ and Mn(II) 2+ observed in the porewater stem from iron and manganese compounds which may be reduced chemically by hydrogen sulfide and other microbially produced reducing agents or directly through increased activities of the iron and manganese reducing bacteria. In the horizon with high sulfate-reducing activities the methane concentrations in the porewater were lower than in non-stimulated sediment regions. The shape of the concentration depth profile indicates methane consumption through sulfate reducing processes. The in situ experiment demonstrates the response of a natural microbial ecosystem to fluctuations in the environmental conditions.