The long-term effect of non-native earthworm species on forest soil carbon storage is not clear. While initial invasion into earthworm-free soils stimulates carbon losses, there is evidence that carbon stabilization in soil aggregates is enhanced. Fourteen managed forest sites throughout Vermont were sampled to identify and enumerate earthworms, and determine soil aggregate distribution and physically protected carbon. Most of these sites were northern hardwoods reforested in the mid-20th century after agricultural land use. Soil at six 50 × 50 cm subplots at each site was sampled to a depth of 20 cm below the Oe horizon and the mineral soil fractionated into free microaggregates (<250 μm), small macroaggregates (250–2000 μm), and large macroaggregates (>2000 μm). Microaggregates were then isolated from the macroaggregates and organic carbon determined. Mean earthworm numbers below the Oe horizon at each site ranged from 0 to 313 individuals m−2 and ten different species were identified, representing all earthworm ecotypes. Four sites had no earthworms in the soil layer sampled, three sites had earthworms in every subplot with up to six different species, and seven sites had subplots both with and without earthworms. When subplots were grouped by number of species present, there was a trend towards a greater fraction of the mineral soil in macroaggregates containing greater protected carbon, and a lower fraction of free microaggregates. A paired t-test of subplots from the seven sites with variable earthworm presence showed significant differences in the same trends and there was significantly greater mineral soil total carbon and protected carbon in the subplots with earthworms. These results are consistent with recent research into earthworm effects on soil carbon stabilization. While initial invasion likely resulted in a negative carbon balance, our findings suggest that earthworms can enhance transfer of carbon into physically protected pools in these forest soils.