Malononitrile Moiety Research Articles

Colorimetric pH-sensing of artificial gastric fluid using naphthalimide-based CH acids

In this study, we introduce novel colorimetric pH-sensing probes based on naphthalimide malonate derivatives. These probes were synthesized by reacting 4-bromo-1,8-naphthalimide with various malonates, including malononitrile, ethyl cyanoacetate, and diethyl malonate. Each derivative exhibited distinct pH-sensing characteristics due to their differing CH acidities. The malononitrile-based probe, NPI-N2, demonstrated pronounced chromogenic pH-signaling behavior, transitioning from colorless to red-violet, accompanied by a decrease in fluorescence intensity. Notably, NPI-N2 retained its pH-sensing capability in the presence of common metal ions, anions, and pepsin, a key component of gastric fluid. The pKa of NPI-N2 was determined to be 3.08 through pH-dependent absorbance curve fitting. To modulate the pH-sensing range, ester-nitrile (NPI-EN) and diethyl ester (NPI-E2) subunits were incorporated into the naphthalimide framework, resulting in increased pKa values of 6.73 and 10.76, respectively. The pH-signaling mechanism of NPI-N2 was elucidated by 1H and 13C NMR spectroscopy, revealing deprotonation of the malononitrile moiety and subsequent resonance extension through the naphthalimide structure. To facilitate practical pH determination, NPI-N2 was integrated into a paper-based test strip, enabling convenient and reliable pH measurement of artificial gastric fluid.

Mitochondria-targeted ruthenium(II)-based phosphorescent chemodosimeter for peroxynitrite detection in drug-induced liver injury

Peroxynitrite (ONOO−), as a strong oxidative biomolecule, is considered a potential biomarker of drug-induced liver injury (DILI) that could disturb biochemistry processes and cause a great variety of liver diseases. However, it remains a significant challenge to discover quickly and track accurately ONOO− in vivo environments even if these active substances have aggravated liver damage. Herein, we developed a peroxynitrite-activable mitochondria-targeted phosphorescent chemodosimeter (Ru-Mit) for DILI monitoring, which was designed by covalently linking ruthenium(II) complex with the strong electron-withdrawing malononitrile moiety. In the presence of ONOO−, the chemodosimeter hard to be oxidized exhibited excellent turn-on phosphorescent response at 610 nm with a longer lifetime (∼ 300 ns). The sensing mechanism indicated the malononitrile group in Ru-Mit was removed via the hydrolysis of C=C bond, accompanied by the change of electronic structure and the enhancement of radiative transitions. Further, reliable signals are capable of not only imaging exogenous and endogenous ONOO− in mitochondria, but also visualizing APAP-induced and tolcapone-induced ONOO− generation in HepG2 cells by confocal luminescence imaging. This work might provide a new molecular platform to design and develop ONOO− probes, and it might be used as a practical tool to detect ONOO− for the pathogenesis research of DILI.

Monitoring of Hypochlorite Level in Fruits, Vegetables, and Dairy Products: A BODIPY-Based Fluorescent Probe for the Rapid and Highly Selective Detection of Hypochlorite.

Hypochlorite/hypochlorous acid (ClO-/HOCl), among the diverse reactive oxygen species, plays a vital role in various biological processes. Besides, ClO- is widely known as a sanitizer for fruits, vegetables, and fresh-cut produce, killing bacteria and pathogens. However, excessive level of ClO- can lead to the oxidation of biomolecules such as DNA, RNA, and proteins, threatening vital organs. Therefore, reliable and effective methods are of utmost importance to monitor trace amounts of ClO-. In this work, a novel BODIPY-based fluorescent probe bearing thiophene and a malononitrile moiety (BOD-CN) was designed and constructed to efficiently detect ClO-, which exhibited distinct features such as excellent selectivity, sensitivity (LOD = 83.3 nM), and rapid response (<30 s). Importantly, the probe successfully detected ClO- in various spiked water, milk, vegetable, and fruit samples. In all, BOD-CN offers a clearly promising approach to describe the quality of ClO--added dairy products, water, fresh vegetables, and fruits.

(Z)-3-(Dicyanomethylene)-4-((5-fluoro-3,3-dimethyl-1-(3-phenylpropyl)-3H-indol-1-ium-2-yl) methylene)-2-(((E)-5-fluoro-3,3-dimethyl-1-(3-phenylpropyl)indolin-2-ylidene)methyl) cyclobut-1-en-1-olate

Recent literature on this topic highlights the significance of adding malononitrile moiety and halogen substituents to the squaraine scaffold to create redshifted fluorophores into the near-infrared optical region. Herein, a redshifted hydrophobic squaraine dye is synthesized via a three-step pathway. The reported dye is characterized by spectroscopic techniques, such as 1H NMR, 19F NMR, 13C NMR, and high-resolution mass spectroscopy. Optical properties are also reported using absorbance and fluorescence studies. The hydrophobicity of the dye was studied with absorbance and fluorescence spectroscopy in water–methanol mixtures and showed J-aggregates as the water concentration increased. Density functional theory calculations were conducted to assess its electron delocalization as well as observe the three-dimensional geometry of the dye as a result of the dicyanomethylene modification and the two bulky phenyl groups.

Simplified Y6-Based Nonfullerene Acceptors: In-Depth Study on Molecular Structure-Property Relation, Molecular Dynamics Simulation, and Charge Dynamics.

Two new Y6 derivatives of symmetrical YBO-2O and asymmetrical YBO-FO nonfullerene acceptors (NFAs) are prepared with a simplified synthetic procedure by incorporating octyl and fluorine substituents onto the terminal 2-(3-oxo-2,3-dihydro-1H-inden-1-ylidene)malononitrile (INCN) moiety. By moving the alkyl substituents on the Y6 core to the terminal INCN moiety, the lowest unoccupied molecular orbital of the YBO NFAs increases without decreasing solubility, resulting in high open-circuit voltages of the devices. Molecular dynamics simulation shows that YBO-2O/-FO preferentially form core-core and terminal-terminal dimeric interactions, demonstrating their tighter packing structure and higher electron mobility than Y6, which is consistent with 2D grazing incidence X-ray scattering and space charge limited current measurements. In blend films, the hole transfer (HT) from YBO-2O/-FO to the polymer donor PM6 is studied in detail by transient absorption spectroscopy, demonstrating efficient HT from YBO-FO to PM6 with their suitable energy level alignment. Despite the simplified synthesis, YBO-FO demonstrates photovoltaic performance similar to that of Y6, exhibiting a power conversion efficiency of 15.01%. Overall, this design strategy not only simplifies the synthetic procedures but also adjusts the electrical properties by modifying the intermolecular packing and energy level alignment, suggesting a novel simplified molecular design of Y6 derivatives.

Asymmetric Michael Reaction of Malononitrile and α,β-Unsaturated Aldehydes Catalyzed by Diarylprolinol Silyl Ether

AbstractAn asymmetric Michael reaction of malononitrile and α,β-unsaturated aldehydes catalyzed by a diarylprolinol silyl ether was developed. Michael products were obtained in good yields and with excellent enantioselectivities without the formation of overreaction products. As a malononitrile moiety can be transformed into an alkoxy or amino carbonyl moiety by oxidative transformation, α-chiral esters or amides with all-carbon quaternary centers can be synthesized with excellent enantioselectivities.

3+2]-Annulation of oxindolinyl-malononitriles with Morita–Baylis–Hillman acetates of nitroalkenes for the regio- and diastereoselective synthesis of spirocyclopentane-indolinones

3-Oxindolinyl-malononitrile participates as a 1,2-binucleophile in a highly regio- and stereoselective [3 + 2] annulation with 1,3-bielectrophilic nitroallylic acetates leading to spirocyclopentane-indolinones. The reaction takes place in the presence of DABCO in THF at room temperature and affords the multi-functional spirocyclic compounds possessing three chiral centers, including a spiro-chiral center in good to excellent yields and short reaction time. The key role of the malononitrile moiety in controlling the reactivity and selectivity has also been demonstrated. An SN2′-intramolecular Michael addition pathway is proposed for the [3 + 2] annulation based on DFT calculation results.

Toward improved stability of nonfullerene organic solar cells: Impact of interlayer and built‐in potential

AbstractImproved efficiency and stability of the organic solar cells (OSCs) are the critical considerations for practical applications. The interface between the interlayer and bulk heterojunction has recently been shown as one of the weak links associated with the degradation in the nonfullerene acceptor (NFA)‐based OSCs. It shows that the removal of the interfacial chemical reactions between the 2‐(3‐oxo‐2,3‐dihydroinden‐1‐ylidene)malononitrile (INCN) moieties in NFA and poly(3,4‐ethylenedioxythiophene)‐polystyrene sulfonate (PEDOT:PSS) hole extraction layer (HEL) is desired for enhancing the device stability. In this work, we show that the use of a bilayer MoO3/antimonene HEL favors the operational stability in OSCs through maintaining a high built‐in potential and suppression of an undesired interfacial reaction between INCN moieties in NFA and the PEDOT structures in PEDOT:PSS. A power conversion efficiency of 16.68% is also obtained for the OSCs with a bilayer MoO3/antimonene HEL, prepared using a blend system of PM6:Y6, demonstrating its suitability for high‐performance OSCs.image

Computational and photophysical characterization of a Laurdan malononitrile derivative.

The malononitrile group is considered one of the strongest natural electron-withdrawing groups in a chemist's arsenal. However, surprisingly little is known about how this group functions in push-pull fluorophores. In a recent computational study, we reported that replacing the ketone group of the traditional push-pull dye Laurdan with a malononitrile group significantly improves the optical properties while retaining the membrane behavior of the parent molecule Laurdan. Motivated by these results, we report here the synthesis and photophysical characterization of the said compound, 6-(1-undecyl-2,2-dicyanovinyl)-N,N-dimethyl-2-naphthylamine (CN-Laurdan). To our surprise, this new CN-Laurdan probe is found to be much less bright than the parent Laurdan due to a large drop in the fluorescence quantum yield. Using computational methods, we determine that the origin of this low quantum yield is related to the existence of a non-radiative decay pathway related to a rotation of the malononitrile moiety, suggesting that the molecule could nonetheless function very well as a molecular rotor. We confirm experimentally that CN-Laurdan functions as a molecular rotor by measuring the quantum yield in methanol/glycerol mixtures of increasing viscosity. Specifically, we found a consistent increase in the quantum yield across the entire range of tested viscosities.

Design and Synthesis of Annulated Benzothiadiazoles via Dithiolate Formation for Ambipolar Organic Semiconductors.

Substituted 2,1,3-benzothiadiazole (BTD) is a widely used electron acceptor unit for functional organic semiconductors. Difluorination or annulation on the 5,6-position of the benzene ring is among the most adapted chemical modifications to tune the electronic properties, though each sees its own limitations in regulating the frontier orbital levels. Herein, a hitherto unreported 5,6-annulated BTD acceptor, denoted as ssBTD, is designed and synthesized by incorporating an electron-withdrawing 2-(1,3-dithiol-2-ylidene)malononitrile moiety via aromatic nucleophilic substitution of the 5,6-difluoroBTD (ffBTD) precursor. Unlike the other reported BTD annulation strategies, this modification leads to the simultaneous decrease in both frontier orbital energies, a welcoming feature for photovoltaic applications. Incorporation of ssBTD into conjugated polymers results in materials boasting broad light absorption, dramatic solvatochromic and thermochromic responses (>100 nm shift and a band gap difference of ∼0.28 eV), and improved crystallinity in the solid state. Such physical properties are in accordance with the combined electron-withdrawing effect and significantly increased polarity associated with the ssBTD unit, as revealed by detailed theoretical studies. Furthermore, the thiolated ssBTD imbues the polymer with ambipolar charge transport property, in contrast to the ffBTD-based polymer, which transports holes only. While the low mobilities (10-4 to 10-5 cm2 V-1 s-1) could be further optimized, detailed studies validate that the thioannulated BTD is a versatile electron-accepting unit for the design of functional stimuli-responsive optoelectronic materials.

Efficient As‐Cast Polymer Solar Cells with High and Stabilized Fill Factor

Molecular ordering and miscibility of donor and acceptor materials play critical roles in developing high‐performance as‐cast polymer solar cells (PSCs). In this work, a highly crystalline nonfullerene small molecular acceptor, namely, C8‐IT‐4F, based on alkylated indacenodithieno[3,2‐b]thiophene as the aromatic core and 2‐(5,6‐difluoro‐3‐oxo‐2,3‐dihydro‐1H‐inden‐1‐ylidene)malononitrile moieties as end groups, is selected and synthesized. The π–π stacking distance in C8‐IT‐4F film can be tuned from 3.88 Å to a more compact (3.48 Å) state by a film‐formation process and the confinement induced by the preaggregated polymer donor PM7, leading to broadened absorption and fine phase separation in the blend film. The optimal morphology with a framework of preaggregated polymer donor, J‐type face‐on π–π stacked acceptor, and appropriate donor/acceptor miscibility facilitates charge generation and transport and reduces charge recombination. As a result, the best PSC based on the as‐cast PM7:C8‐IT‐4F blend film exhibits power conversion efficiency of 14.3%, with an open‐circuit voltage of 0.82 V, a short‐circuit current density of 22.7 mA cm−2, a fill factor of 77.1%, and good photostability with a stabilized fill factor.

Thioimidate Bond Formation between Cardiac Troponin C and Nitrile-containing Compounds.

We have investigated the mechanism and reactivity of covalent bond formation between cysteine-84 of the regulatory domain of cardiac troponin C and compounds containing a nitrile moiety similar to the calcium sensitizer levosimendan. The results of modifications to the levosimendan framework ranged from a large increase in covalent bond formation to complete inactivity. We present the biological activity of one of the most potent compounds. Limitations, including compound solubility and degradation at acidic pH, have prevented thorough investigation of the potential of these compounds. Our studies reveal the efficacious nature of the malononitrile moiety in targeting cNTnC and its potential in future cardiotonic drug design.

Ultrafast deep-red emission fluorescent probe for highly selective imaging of endogenous cysteine in living cells and mice

It is still challenging how to selectively and sensitively detect cysteine in living systems which plays crucial roles in many physiological and biological processes. Here, we developed a deep-red emission fluorescent probe (DRP-Cys) for Cys based on a hemicyanine scaffold. A tailed malononitrile group could chromatically shift excitation/emission wavelengths to avoid the limitations such as photo-damage or auto-fluorescence in biological samples. Compared with other amino acids, Cys could trigger the Michael addition reaction to release a dramatic enhancement in fluorescence centering at around 645 nm in DMSO aqueous solution under physiological conditions with an ultrafast response time of about 1 min and a low limit of detection of 10 nM which significantly benefited from the introduction of the malononitrile moiety. The probe was also successfully applied for visualizing endogenous Cys in living HeLa cells and mice with low cytotoxicity and good cell-membrane permeability.

Two-isophorone fluorophore-based design of a ratiometric fluorescent probe and its application in the sensing of biothiols.

2,4-Dinitrobenzenesulfonyl (DNBS) has been widely used for the design of small fluorescent probes for biothiols due to its high reactivity. However, most DNBS-based fluorescent probes exhibit "off-on" fluorescence response towards biothiols due to the strong quenching effects of DBNS on the fluorophores. Herein, we present an alternative design of a ratiometric fluorescent probe based on DNBS for biothiols. A new fluorophore bearing two isophorone malononitrile structures was conjugated with DNBS to provide a target probe (CHT), which exhibited a ratiometric sensing behavior towards biothiols. The sensing process is rapid and highly selective. Most importantly, CHT has high stability in the quantitative detection of Cys compared to the control probe CHM, which performed an "off-on" sensing for biothiols. Endogenous biothiols were successfully monitored with CHT in live cells through the ratiometric fluorescence signal. This new fluorophore bearing two isophorone malononitrile moieties will pave a new avenue to design ratiometric fluorescent probes for imaging and quantitative detection.

Novel asymmetrical phenothiazine for fluorescent detection of cyanide anions

Novel asymmetrical phenothiazine (PTZ) bearing 2-(3-oxo-2,3-dihydro-1H-inden-1-ylidene)-malononitrile (OIM) moiety as the cyanide receptor was synthesized. The sensor fluorophore displayed an intramolecular charge transfer (ICT) electronic absorption peak at 500 nm and fluorescence peak at 576 nm in CH3CN:H2O (90:10) solution. When running a titration of the prepared phenothiazine fluorophore with a range of concentrations of cyanide, the electronic absorption and fluorescence peaks diminish in a ratio-metric mode. This can be attributed to the nucleophilic Michael attack of cyanide anion at the α-position of the oxoindenylidenemalononitrile vinyl moiety of the fluorophore. This results in switching such electron acceptor to anionic electron donor and thus breaking the conjugated molecular system, which eventually influence the ICT and the emission peak position of the fluorophore. It was found that the fluorescent sensor displayed high sensitivity with a rapid responding time as low as than 50 s. A high selectivity was also detected toward cyanide ion at a recognition limit as low as 3.2 × 10−9 mol L−1.

Sensing mechanism for a fluorescent off–on chemosensor for cyanide anion

In this article, the sensing mechanism of cyanide anion chemosensor 2-((2-phenyl-2H-1,2,3-triazol-4-yl)methylene)malononitrile (M1) has been investigated through the density functional theory (DFT) and time-dependent density functional theory (TDDFT) methods. The theoretical results demonstrate that the reaction barrier of 13.02kcal/mol means a favorable response speed of the chemosensor M1 for cyanide anion. Cyanide anion attacks C=C double bond and hinders the ICT process from the malononitrile moiety to the fluorophore phenyl ring. The high viscosity of DMSO restrains the twisting of the group, inhibits the formation of the ICT state in the first excited state. Due to weak ICT character, the nucleophilic addition product shows the dramatic “off–on” fluorescence enhancement. Meanwhile, intramolecular charge transfer (ICT) mechanism accounts for how different solvents influence the fluorescence spectra. That is, more obvious ICT character of product in EtOH causes fluorescence quenching. The “reaction-based” recognition mode and large bond energy between M1 and cyanide anion minimize the interference by other anions, such as F−, AcO−. Thus, the chemosensor M1 has a high selectivity for cyanide.

Organocatalytic, Asymmetric Eliminative [4+2] Cycloaddition of Allylidene Malononitriles with Enals: Rapid Entry to Cyclohexadiene‐Embedding Linear and Angular Polycycles

AbstractA direct aminocatalytic synthesis has been developed for the chemo‐, regio‐, diastereo‐, and enantioselective construction of densely substituted polycyclic carbaldehydes containing fused cyclohexadiene rings. The chemistry utilizes, for the first time, remotely enolizable π‐extended allylidenemalononitriles as electron‐rich 1,3‐diene precursors in a direct eliminative [4+2] cycloaddition with both aromatic and aliphatic α,β‐unsaturated aldehydes. The generality of the process is demonstrated by approaching 6,6‐, 5,6‐, 7,6‐, 6,6,6‐, and 6,5,6‐fused ring systems, as well as biorelevant steroid‐like 6,6,6,6,5‐ and 6,6,6,5,6‐rings. A stepwise reaction mechanism for the key [4+2] addition is proposed as a domino bis‐vinylogous Michael/Michael/retro‐Michael reaction cascade. The utility of the malononitrile moiety as traceless activating group of the dicyano nucleophilic substrates is demonstrated.

Organocatalytic, Asymmetric Eliminative [4+2] Cycloaddition of Allylidene Malononitriles with Enals: Rapid Entry to Cyclohexadiene-Embedding Linear and Angular Polycycles.

A direct aminocatalytic synthesis has been developed for the chemo-, regio-, diastereo-, and enantioselective construction of densely substituted polycyclic carbaldehydes containing fused cyclohexadiene rings. The chemistry utilizes, for the first time, remotely enolizable π-extended allylidenemalononitriles as electron-rich 1,3-diene precursors in a direct eliminative [4+2] cycloaddition with both aromatic and aliphatic α,β-unsaturated aldehydes. The generality of the process is demonstrated by approaching 6,6-, 5,6-, 7,6-, 6,6,6-, and 6,5,6-fused ring systems, as well as biorelevant steroid-like 6,6,6,6,5- and 6,6,6,5,6-rings. A stepwise reaction mechanism for the key [4+2] addition is proposed as a domino bis-vinylogous Michael/Michael/retro-Michael reaction cascade. The utility of the malononitrile moiety as traceless activating group of the dicyano nucleophilic substrates is demonstrated.

Tetracyanodibenzotetrathiafulvalene Diimides: Design, Synthesis, and Property Study

Tetracyanodibenzotetrathiafulvalene diimide (TCDBTTF-DI), an isomer of core-expanded naphthalene diimides bearing two 2-(1,3-dithiol-2-ylidene)malononitrile moieties (NDI-DTYM2), has been designed and synthesized to explore the effect of its isomeric structure on the optical and electrochemical properties of the materials. UV-vis spectra show that TCDBTTF-DI exhibits variation in its absorption peaks while maintaining a similar optical band gap to NDI-DTYM2. Electrochemical studies indicate that TCDBTTF-DI can not only accept but also lose electrons, in contrast to the solely electron-accepting behavior of NDI-DTYM2.

2-[(5-Methylthiophen-2-yl)methylidene]malononitrile

There are two independent molecules in the asymmetric unit of the title compound, C9H6N2S, which is an inter­mediate compound of a cardiovascular drug. The two molecules are nearly planar, displaying dihedral angles of 3.5 (2) and 5.7 (2)° between the thiophene ring and the malononitrile moiety. In the crystal, C—H⋯N inter­actions lead to the formation of a sheet structure that packs in a parallel fashion.