The Barapukuria coal basin stands as Bangladesh’s sole active underground coal mining site. The geological setting of this basin is marked by two major faults, the Eastern Boundary Fault and FB fault encircling the basin perimeter, alongside several smaller faults and those induced by underground longwall mining activities. A major concerning issue of this mine is the water inrush into the mine area from the extensive groundwater aquifer, Upper DupiTila (UDT). Using the Fault Seal Analysis technique employed by (Yielding et al. in Am Assoc Pet Geol Bull 81:897–917, 1997) algorithm, this analysis attempts to identify susceptible areas and potential unsealed faults that could provide the risk of water invasion into the mine area. Evaluation of Fault Seal Analysis reveals varying Shale Gauge Ratio (SGR) values: 0.08 and 0.13 for the major Eastern Boundary Fault, 0.05 for the second largest FB fault, 0.35 and 0.53 for FB-1, and 5.65, 1.69, and 1.22 for the smaller faults BGP-N-F11, BGP-N-F2, and F-24, respectively. According to SGR values, the Eastern Boundary Fault and the FB fault plane are anticipated to be unsealed and dip westward at an angle of 75°-80°, rendering them vulnerable to water inflow through the fault planes. The analysis also suggests that the Lower DupiTila (LDT) aquiclude which can impede the groundwater flow from the UDT aquifer into the mine area, is very thin or absent in the northern region of the basin making this region highly susceptible to water inundation.