Major Commercial Fisheries Research Articles

Assessing the impacts of environmental and ecological variables on the performance of Fraser sockeye salmon forecast

The Canadian Fraser River sockeye salmon ( Oncorhynchus nerka) is one of the largest stock complexes in North America, supporting major commercial, recreational, and First Nations fisheries. Sockeye fisheries management relies on an annual pre-season forecast of adult returns. In this study, we developed a comprehensive framework for visualization with a Taylor diagram to evaluate pre-season forecast models annually and identify external drivers important for forecasting sockeye returns. Specifically, we incorporated five new covariates, including sea surface temperature in the Gulf of Alaska and the abundance of salmon species, into the existing forecast models. Results revealed better performances by both the Ricker and Power models when coupled with the newly included covariates. Moreover, models selected over a decade ago underperformed compared to those selected based on our recent retrospective analysis from 2009 to 2020. We advocate for continuous evaluation of forecast models in the face of environmental change, emphasizing the necessity of developing models that incorporate non-stationary processes and assess the impacts of environmental and ecological factors on Fraser sockeye dynamics.

Ecosystem-Based Fishery Management in the Bering Sea

The waters of the Bering Sea are among the most productive on earth, having supported major commercial fisheries for up to ~60 years and First Nations cultures for millennia [...]

Impact of exposure temperature rise on mass mortality of tidal flat pacific oysters

Oysters are a major commercial and ecological fishery resource. Recently, the oyster industry has experienced mass mortality in summer due to environmental factors. Generally, the survival of oysters in aquatic environments is mainly impacted by environmental stressors such as elevated sea temperatures and reduced salinity; however, the stressors impacting tidal flat oysters that are repeatedly exposed to air remain poorly understood. Hence, we studied the relationship between environmental factors and the survival of tidal flat pacific oysters in Incheon, South Korea, where mass mortality is common. Principal component analysis and Bayesian networks revealed that air temperature (in spring and summer) and sea temperature (in summer) are related to oyster production. In habitats of the tidal flat oysters during the summer, high temperatures of 34.7–35.4°C (maximum 47.6°C) were observed for average durations of 0.8–1.9 hours (maximum 3.6 hours). Furthermore, heat waves occurred for up to 12 consecutive days. Results from the multiple stress test showed that when exposed to 45°C (air temperature) for 4 hours per day, the survival rate of oysters was 42.5% after only 2 days and 0% after 6 days. The findings stemming from the field observations and stress tests suggest that high temperatures during emersion may contribute to mass mortality of oysters in summer, indicating a potential threat to oysters due to climate change. To understand the effects of future thermal stress on oysters more accurately, simultaneous long-term trend analyses and field-based observations are required.

Unconventional Sea Surface Temperature Regime Around Japan in the 2000s–2010s: Potential Influences on Major Fisheries Resources

Climate-change associated changes in oceanographic conditions, particularly sea surface temperatures (SSTs), have systematically affected many marine fisheries resources around Japan. The Pacific Decadal Oscillation (PDO) index is considered one of the most important climate indices for describing basin-scale SST variations in the North Pacific, which are closely related to decadal variations in fisheries resources. Time series of the PDO index has been used to conventionally classify decadal conditions of ocean and fisheries resources around Japan as either warming or cooling regimes. It is now clear that for the 2000s to the mid-2010s, mostly during the “global surface warming slowdown,” the SST regime around Japan was unconventional; despite the PDO index being in a negative phase, which normally corresponds to a warming regime around Japan, SSTs exhibited decadal cooling in some waters and seasons. SSTs in the western part of the North Pacific subtropical gyre gradually decreased, particularly in autumn–spring, whereas SSTs in the western subarctic gyre and the Sea of Okhotsk increased. Moreover, SSTs between the subtropical and subarctic waters around northern Japan exhibited seasonal contrasts that were decadally intensified through the combined effects of cooling in winter–spring and warming in summer–autumn. Some major marine fisheries resources around Japan showed decadal increases or decreases beginning in the mid-2000s, and appeared to respond to the unconventional SST changes in their early life stages. In this paper, we review atmosphere and ocean conditions around Japan in the 2000s–2010s in terms of global climate, present an overview of potential impacts of decadal SST trends on five major commercial fisheries resources (walleye pollock, chum salmon, Japanese sardine, Japanese anchovy, and Japanese flying squid), and raise awareness that an unconventional regime can appear transiently during a state of global warming.

Checking the pulse of the major commercial fisheries of lake Victoria Kenya, for sustainable management

AbstractThe present study demonstrates the declining state of the major commercial fisheries of Lake Victoria, Kenya, a situation threatening sustainability of the lake's fishery. Data in the present study were derived from resource monitoring programmes that included hydro‐acoustics (2009–2018), trawl net fishing (2011–2018), frame surveys (2000–2016) and catch assessment surveys (2000–2015). The activities provided information on fish stocks and supported advice for fisheries management. The average fish stock densities for Tanzania, Uganda and Kenya of 8.92, 8.25 and 8.19 t/km2, respectively, were relatively similar. Diplomatic and sustainable efforts for harmony in fish harvesting among the fishers of the riparian countries are encouraged given the interdependence of the lake. The Kenyan and River Kagera regions had a higher proportion (≈ 4% each) of big‐sized Nile perch (≥50 cm total length) in 2018, signifying the critical breeding areas for Nile perch. To sustain the fishery, there is need to enforce a 36%–44% effort reduction for all the major fisheries, and enforcement of gear limits to avoid harvesting of immature fish and destruction of the lake ecosystem.

Spatiotemporal distributions of two sympatric sawsharks (Pristiophorus cirratus and P. nudipinnis) in south-eastern Australian waters

Sawsharks are one of the least well-known groups of sharks globally, yet they are caught in large numbers in south-eastern Australia. In this study we assessed spatiotemporal patterns of distribution of two co-occurring species of sawsharks, namely the common sawshark (Pristiophorus cirratus) and the southern sawshark (Pristiophorus nudipinnis), to guide future research in this area. To identify where the animals may occur in greater numbers, this study used the major commercial fishery datasets in the region, containing nearly 180000 catch records from 1990 to 2017. Several general patterns were evident. Sawsharks occurred at shallower and deeper depths than previously thought, and their geographical range was larger than documented in previous studies. Depth distributions of both species overlapped, but P. cirratus appeared more common in deeper water (at depths up to 500m), with peak common sawshark catch rates at ~400m. Seasonal standardised catch patterns across fishing methods suggested that migrations from deeper to shallower waters may occur in the Australasian autumn and winter. The greatest concentration of sawsharks, inferred by standardised catch rates, occurred to the east and west of Bass Strait between Tasmania and mainland Australia. Although standardised catch rates of sawsharks declined in gill-net fisheries by ~30%, primarily in the Bass Strait and Tasmania, sawsharks appear to be caught at consistent rates since the 1990s, inferring a possible resilience of these sharks to current levels of fishing pressure.

Assessment of the Relationship of Stock and Recruitment in the Atlantic Surfclam Spisula solidissima in the Northwestern Atlantic Ocean

Atlantic surfclams support a major commercial fishery in the western North Atlantic Ocean with landings consistently between 15,000 and 25,000 metric tons since 1982. The stock is not and historically has not been overfished nor has overfishing occurred; however, in recent years landings per unit effort have declined. Surfclams are a biomass dominant on the continental shelf and a bellwether of climate change in the northwestern Atlantic. This study investigated the relationship of broodstock and recruitment during a period when Mid-Atlantic warming initiated a shelf-wide shift in the surfclams range. A species distribution function model was used to assess the effective area occupied by surfclams for five study regions (Delmarva, New Jersey, Long Island, Southern New England, and Georges Bank). The effective area occupied by small surfclams was consistently much greater than that for large (≥120 mm) surfclams. Three independent statistical analyses of the stock-recruitment relationship found little evidence of a significant association in any of the five regions, suggesting that factors besides spawning stock biomass (SSB) are primary determinants of recruitment success. Interannual variability in recruitment, in part associated with variations in larval transport and in part associated with spatially different rates of mortality post-settlement, is an important source of uncertainty and warming bottom waters driving surfclams into new habitat may decouple any inherent interaction between recruits and SSB. A recruitment index obtained from a fishery-independent survey across the range of the stock, as a consequence, is unlikely to usefully presage changes in abundance of the fishable stock. The wider distribution of settlers relative to the fishable stock, however, positions the species well to respond to changing bottom water temperatures as Mid-Atlantic warming continues.

Nutrient composition of fish protein powder developed from Brycinus nurse (Rüppell, 1832).

A new product in the form of edible fish powder was developed from small pelagic fish (Brycinus nurse) which constitutes one of the major commercial fisheries in Lake Albert, Uganda. The objective of the study was to determine the proximate and mineral composition of the newly developed fish powder and also to compare it with Nile tilapia powder already on market. Results indicated that the changes in the amount of protein and ash were found to be significantly higher (p < 0.05) in fish powder than in fried samples. The increase in fat content of fried fish samples was found to be significant compared to other fish samples. No significant changes (p > 0.05) were observed in carbohydrate content for raw, fried, and powdered samples. Vitamin A decreased significantly in powdered samples. Comparing the B. nurse powder and tilapia powder (made from juvenile tilapia as raw material), the results indicated that B. nurse had higher levels of iron and manganese. Extracting proteins from B. nurse provides an opportunity to increase the utilization of harvested catch.

Stock structure analysis of the Arabian red shrimp (Aristeus alcockiRamadan, 1938) in the Indian coast with truss network morphometrics

The Arabian red shrimp (Aristeus alcocki Ramadan, 1938) is a deep-sea penaeoid shrimp that forms a major commercial fishery in the Indian coast. However, the spawning population of this species along the Indian coast is poorly known. To study this, stock structure of A. alcocki using truss morphometry was employed. A total of 1842 matured specimens were collected from five geographical locations (Tuticorin (SET), Chennai (SEC), Nagapattianam (SEN), Sakthikulangara (SWS), and Kalamuku (SWK)) along the Indian coast. Thirty-nine truss distances were extracted from each specimen and analyzed by multivariate methods (i.e., principal component analysis (PCA), discriminant functions (DF), and hierarchical cluster analysis). The results of the PCA indicated that the first two components cumulatively explained &gt;70% (female: 72.1%; male: 71.5%) of the total morphometric variation. Stepwise DF analysis indicated that abdominal variables significantly discriminated the populations at different locations. The results clustered the five samples into a minimum of two groups: samples from SWK clustered in group I, whereas rest of the samples clustered in group II. Morphometric variation between the groups was significant for each sex. Significant differences between the groups may be attributed to geographical and environmental conditions, suggesting separate management strategies for resource sustainability.

The effects of red tide (Karenia brevis) on reflex impairment and mortality of sublegal Florida stone crabs, Menippe mercenaria

The Florida stone crab, Menippe mercenaria, is a major commercial fishery that occurs primarily along Florida's west coast, where harmful algal blooms of Karenia brevis frequently develop. To determine sublethal and lethal effects of K. brevis on M. mercenaria, we exposed sublegal stone crabs to three seawater treatments in laboratory conditions: no K. brevis (control), a low-toxin K. brevis strain (Wilson LT), and a toxic K. brevis (New Pass strain). Total food consumed, reflex impairment and survivorship of each crab was monitored throughout the nine-day experiment. Crabs in the toxic treatment consumed 67% less food. The probability of an individual losing a reflex significantly increased with time (days), and there was a 42% decrease in survivorship in the toxic treatment. This is the first study to demonstrate negative effects of K. brevis on the stone crab, presenting the critical need of further investigation to fully understand how red tide may impact sustainability of the fishery.

Ontogenetic Changes in Vulnerability of the Prawn Fenneropenaeus indicus to UV-B Radiation Help Explain Ontogenetic Habitat Shifts

The Indian Ocean white prawn (Fenneropenaeus indicus H. Milne Edwards, 1837) is distributed across the Indian Ocean, from southern Africa to northern Australia and the Red Sea, and is also present in all of South-East Asia, where F. indicus is a major commercial fishery species. F. indicus has been domesticated for aquaculture and is extensively cultured in farms throughout South-East Asia, India, the Middle East, Saudi Arabia, and eastern Africa (Ling et al. 1999). F. indicus is a non-burrowing prawn species preferring a sandy or muddy bottom, and although active at both day and night, it has been shown to display clear daily rhythms in activity, being less active at night (Natarajan 1989). F. indicus has a complex ontogenetic developmental cycle involving 12 stages distributed in three planktonic larval forms (6 nauplii stages, N-1 to N-6; 3 zoea stages, Z-1 to Z-3; and 3 mysis stages, M-1 to M-3). F. indicus develops from hatching to the post larva (PL) stage over 10 to 18 days in natural conditions (Muthu et al. 1978) and 13 to 14 days under hatchery conditions (Silas et al 1985). As many decapods, F. indicus also has a tri-phasic life cycle (Pitman and McAlpine 2003). The prawn matures and breeds mostly in offshore coastal waters, and the larvae are advected in the neuston until recruiting to their estuarine habitats (Forbes and Cyrus 1991). The PL grows in coastal estuaries, backwaters, or lagoons with a particular preference for mangrove habitats (De Freitas 1986; Mohan and Siddeek 1996; Ronnback et al. 2002), where they spend the juvenile and sub-adult stages, before migrating to open coastal habitats for breeding. Larvae are often present in the neuston, except in the period of maximum solar radiation. Seasonal studies off Kochi (Arabian Sea, India) showed that F. indicus larvae are rare in the plankton from May to September (George 1962; Rao 1964). Whereas late larval stages, PL, and juveniles inhabit shaded environments, such as mangrove creeks, the larvae are pelagic and can be subjected to high irradiance in the water column in tropical and subtropical regions. Moreover, this species is reared in shallow aquaculture ponds and floating cages (Walford and Lam 1987), which can also receive high solar radiation in tropical and subtropical regions. High light intensities have been reported to be detrimental for the survival of larval stages of penaeid prawn, which are reared under dim light conditions to increase spawning and early survival success in aquaculture (Wurts and Stickney 1984). The shaded habitat of the PL, in mangrove creeks, the low abundance of planktonic larvae during the months of peak solar radiation, and the light-sensitivity of early life stages all point at a vulnerability of F. indicus larvae to high solar radiation and particularly ultraviolet-B (UV-B) radiation as the most damaging component of solar radiation (Hader et al. 2007; Hansson and Hylander 2009). Because of its commercial importance, the physiology, growth, and behavior of F. indicus have been extensively studied (Kutty et al. 1971; Colvin 1976; Emmerson 1984). The resistance of PL to changes in environmental conditions, Communicated by Charles Simenstad

The impacts of deep-sea fisheries on benthic communities: a review

AbstractDeep-sea fisheries operate globally throughout the world's oceans, chiefly targeting stocks on the upper and mid-continental slope and offshore seamounts. Major commercial fisheries occur, or have occurred, for species such as orange roughy, oreos, cardinalfish, grenadiers and alfonsino. Few deep fisheries have, however, been sustainable, with most deep-sea stocks having undergone rapid and substantial declines. Fishing in the deep sea not only harvests target species but can also cause unintended environmental harm, mostly from operating heavy bottom trawls and, to a lesser extent, bottom longlines. Bottom trawling over hard seabed (common on seamounts) routinely removes most of the benthic fauna, resulting in declines in faunal biodiversity, cover and abundance. Functionally, these impacts translate into loss of biogenic habitat from potentially large areas. Recent studies on longline fisheries show that their impact is much less than from trawl gear, but can still be significant. Benthic taxa, especially the dominant mega-faunal components of deep-sea systems such as corals and sponges, can be highly vulnerable to fishing impacts. Some taxa have natural resilience due to their size, shape, and structure, and some can survive in natural refuges inaccessible to trawls. However, many deep-sea invertebrates are exceptionally long-lived and grow extremely slowly: these biological attributes mean that the recovery capacity of the benthos is highly limited and prolonged, predicted to take decades to centuries after fishing has ceased. The low tolerance and protracted recovery of many deep-sea benthic communities has implications for managing environmental performance of deep-sea fisheries, including that (i) expectations for recovery and restoration of impacted areas may be unrealistic in acceptable time frames, (ii) the high vulnerability of deep-sea fauna makes spatial management—that includes strong and consistent conservation closures—an important priority, and (iii) biodiversity conservation should be &amp;gt; balanced with options for open areas that support sustainable fisheries.

Population genetics of the speckled peacock bass (Cichla temensis), South America’s most important inland sport fishery

The Neotropics harbor the world’s most diverse freshwater fish fauna, with many of these species supporting major commercial, subsistence, or sport fisheries. Knowledge of population genetic structure is available for very few Neotropical fishes, thereby restricting management. To address this need, we examined population genetic variation in mtDNA control region sequences and twelve microsatellite loci in the speckled or barred peacock bass, Cichla temensis. Moderate and statistically significant genetic divergence among localities indicates that migration is low in this species, implying that populations inhabiting tributaries or even smaller spatial units should constitute management units. Analysis of molecular variance of mtDNA sequences identified six areas with largely exclusive haplotype clades, and a seventh area of high admixture, but major drainage basins harbored non-monophyletic haplotype groups. On the other hand, molecular variation in the microsatellite data was best explained by drainage basin and, subsequently, by the seven areas. Populations in these seven areas could be considered evolutionarily significant units (ESUs), and, therefore, we tested hypotheses explaining the discordant signal of mtDNA and microsatellite data using approximate Bayesian computation. This analysis indicated that the divergence of mtDNA clades preceded the divergence of contemporary ESUs across basins, with subsequent lineage sorting among ESUs due to reduced gene flow. Available genetic and ecological information indicates that C. temensis populations of major tributary rivers should be managed as separate stocks that likely are adapted to local environmental conditions.

Trans-species polymorphism at antimicrobial innate immunity cathelicidin genes of Atlantic cod and related species.

Natural selection, the most important force in evolution, comes in three forms. Negative purifying selection removes deleterious variation and maintains adaptations. Positive directional selection fixes beneficial variants, producing new adaptations. Balancing selection maintains variation in a population. Important mechanisms of balancing selection include heterozygote advantage, frequency-dependent advantage of rarity, and local and fluctuating episodic selection. A rare pathogen gains an advantage because host defenses are predominantly effective against prevalent types. Similarly, a rare immune variant gives its host an advantage because the prevalent pathogens cannot escape the host’s apostatic defense. Due to the stochastic nature of evolution, neutral variation may accumulate on genealogical branches, but trans-species polymorphisms are rare under neutrality and are strong evidence for balancing selection. Balanced polymorphism maintains diversity at the major histocompatibility complex (MHC) in vertebrates. The Atlantic cod is missing genes for both MHC-II and CD4, vital parts of the adaptive immune system. Nevertheless, cod are healthy in their ecological niche, maintaining large populations that support major commercial fisheries. Innate immunity is of interest from an evolutionary perspective, particularly in taxa lacking adaptive immunity. Here, we analyze extensive amino acid and nucleotide polymorphisms of the cathelicidin gene family in Atlantic cod and closely related taxa. There are three major clusters, Cath1, Cath2, and Cath3, that we consider to be paralogous genes. There is extensive nucleotide and amino acid allelic variation between and within clusters. The major feature of the results is that the variation clusters by alleles and not by species in phylogenetic trees and discriminant analysis of principal components. Variation within the three groups shows trans-species polymorphism that is older than speciation and that is suggestive of balancing selection maintaining the variation. Using Bayesian and likelihood methods positive and negative selection is evident at sites in the conserved part of the genes and, to a larger extent, in the active part which also shows episodic diversifying selection, further supporting the argument for balancing selection.

Selecting relative abundance proxies for BMSY and BMEY

AbstractThe objectives for many commercial fisheries include maximizing either yield or profit. Clearly specified management targets are a key element of effective fisheries management. Biomass targets are often specified for major commercial fisheries that are managed using quantitative stock assessments where biomass is calculated and tracked over time. BMSY, the biomass corresponding to Maximum Sustainable Yield, is often used as a target when maximizing yield is important, while BMEY is the biomass target to maximize profit. There are difficulties in estimating both quantities accurately, and this paper explores default proxies for each target biomass, expressed as biomass levels relative to carrying capacity, which are more easily estimated. Integration across a range of uncertainties about stock dynamics and the costs of fishing suggests that a proxy for BMSY in the range of 35–40% of carrying capacity minimizes the potential loss in yield compared with that which would arise if BMSY was known exactly, while a proxy for BMEY of 50–60% of carrying capacity minimizes the corresponding potential loss in profit. These estimates can be refined given stock-specific information regarding productivity (particularly the parameter which defines the resilience of recruitment to changes in spawning stock size) and costs and prices. It is more difficult to find a biomass level that achieves a high expected profit than a biomass level that achieves a high expected catch, because the former is sensitive to uncertainties related to costs and prices, as well as parameters which determine productivity.

Extreme plasticity in life‐history strategy allows a migratory predator (jumbo squid) to cope with a changing climate

Dosidicus gigas (jumbo or Humboldt squid) is a semelparous, major predator of the eastern Pacific that is ecologically and commercially important. In the Gulf of California, these animals mature at large size (>55cm mantle length) in 1-1.5years and have supported a major commercial fishery in the Guaymas Basin during the last 20years. An El Niño event in 2009-2010, was accompanied by a collapse of this fishery, and squid in the region showed major changes in the distribution and life-history strategy. Large squid abandoned seasonal coastal-shelf habitats in 2010 and instead were found in the Salsipuedes Basin to the north, an area buffered from the effects of El Niño by tidal upwelling and a well-mixed water column. The commercial fishery also relocated to this region. Although large squid were not found in the Guaymas Basin from 2010 to 2012, small squid were abundant and matured at an unusually small mantle-length (<30cm) and young age (approximately 6months). Juvenile squid thus appeared to respond to El Niño with an alternative life-history trajectory in which gigantism and high fecundity in normally productive coastal-shelf habitats were traded for accelerated reproduction at small size in an offshore environment. Both small and large mature squid, were present in the Salsipuedes Basin during 2011, indicating that both life- history strategies can coexist. Hydro-acoustic data, reveal that squid biomass in this study area nearly doubled between 2010 and 2011, primarily due to a large increase in small squid that were not susceptible to the fishery. Such a climate-driven switch in size-at-maturity may allow D. gigas to rapidly adapt to and cope with El Niño. This ability is likely to be an important factor in conjunction with longerterm climate-change and the potential ecological impacts of this invasive predator on marine ecosystems.

Modelling ecological change over half a century in a subtropical estuary: impacts of climate change, land-use, urbanization and freshwater extraction

The Clarence River Estuary is the largest estuary in southeast Australia, with an extensive floodplain encompassing multiple river channels and a large coastal lagoon. It is the focus of major commercial and recreational fisheries and there is pressure to divert its freshwater inputs for agricultural and domestic uses. We used a spatial biogeochemical model to simulate the variability and evolution of this system on timescales from days to decades over the past half century. Like most tropical and subtropical estuaries, the Clarence River Estuary is strongly in - fluenced by river discharge, sediment and nutrient loads. Given the high nutrient loads arriving from the upper catchment, plankton biomasses in the model were typically limited by flushing through the estuary channels. However, the longer residence times of the lagoons produced a pro- foundly different regime where higher zooplankton concentrations were supported by recycling of nutrients and detritus. Using alternative model scenarios, it was found that the ecology of the lagoon was sensitive to changes in land-use and urbanization within the local sub-catchment, but was largely insensitive to changes in upstream river discharge (i.e. rainfall or freshwater extrac- tion). The opposite was true in the estuary channels, where changes in land-use or urbanisation in the populated lower catchment had little effect on the estuarine ecology, while even modest reductions in river discharges dramatically increased the biomass of the smaller phytoplankton and zooplankton groups, and favoured benthic algae over seagrass and macroalgae. The contrast- ing responses of these 2 estuarine environments suggests the need for distinct management approaches, with stringent controls on nutrient loads into coastal lagoons and protection of environmental flows into estuary channels.

Assessing population-level variation in the mitochondrial genome of Euphausia superba using 454 next-generation sequencing

The Antarctic krill (Euphausia superba Dana 1852) is widely distributed throughout the Southern Ocean, where it provides a key link between primary producers and upper trophic levels and supports a major commercial fishery. Despite its ecological and commercial importance, genetic population structure of the Antarctic krill remains poorly described. In an attempt to illuminate genetic markers for future population and phylogenetic analysis, five E. superba mitogenomes, from samples collected west of the Antarctic Peninsula, were sequenced using new 454 next-generation sequencing techniques. The sequences, of lengths between 13,310 and 13,326 base pairs, were then analyzed in the context of two previously-published near-complete sequences. Sequences revealed relatively well-conserved partial mitochondrial genomes which included complete sequences for 11 of 13 protein-coding genes, 16 of 23 tRNAs, and the large ribosomal subunit. Partial sequences were also recovered for cox1 and the small ribosomal subunit. Sequence analysis suggested that the cox2, nad5, and nad6 genes would be the best candidates for future population genetics analyses, due to their high number of variable sites. Future work to reveal the noncoding control region remains.

Disease profiles differ between non-fished and fished populations of edible crab (Cancer pagurus) from a major commercial fishery

AbstractBateman, K. S., Hicks, R. J., and Stentiford, G. D. 2011. Disease profiles differ between non-fished and fished populations of edible crab (Cancer pagurus) from a major commercial fishery. – ICES Journal of Marine Science, 68: 2044–2052. Despite their significant contribution to global marine fisheries, relatively little information is available on the pathogen profile of commercially exploited decapod crustacean populations. Most of the information published relates to adult (fished) subpopulations, with almost nothing known about disease processes and mortality drivers in juveniles. The seasonal profile of pathogens in non-fished (prerecruit) and fished (recruit) subpopulations of Cancer pagurus, a major target fishery target in European waters, is investigated. Histopathology and ultrastructural assessment of tissues demonstrated a distinct pathogen profile in the two subpopulations, the apparent prevalence of specific pathogens varying with both season and life stage of the host. In some cases, highly prevalent pathogens in the prerecruit subpopulation were not observed in the recruit subpopulation. In this context, the discovery of a novel and highly prevalent haplosporidian-like parasite infecting the antennal gland and bladder of prerecruit life stages of C. pagurus is reported. Co-infections with pathogens described previously, such as Hematodinium sp. and C. pagurus bacilliform virus, were also observed. Disease assessments in the prerecruit subpopulation of commercial decapod fishery targets could perhaps be utilized to improve the estimation of cohort success and, therefore, forecasts of future recruitment to the fishery.

Vulnerability of Fraser River sockeye salmon to climate change: A life cycle perspective using expert judgments

Fraser River sockeye salmon have been the basis for a major commercial fishery shared by Canada and the United States, and an important cultural foundation for many aboriginal groups; they are also of huge ecological significance throughout the Fraser Basin. The potential for altered aquatic habitat and temperature regimes due to climate change is an important concern for Fraser River sockeye salmon. This paper characterizes the vulnerability of Fraser River sockeye salmon to future climate change using an approach that is novel on three counts. First, previous efforts to assess the vulnerability of salmon to climate change have largely focused on only part of the life cycle, whereas we consider climate vulnerability at all stages in the life cycle. Second, we use the available scientific literature to provide a basis for structuring and eliciting judgments from fisheries science and management experts who research and manage these systems. Third, we consider prospects for mitigating the effects of climate change on sockeye salmon. Tests showed that participants’ judgments differentiated in statistically significant ways among questions that varied in terms of life stages, spawning regions and climate scenarios. The consensus among participants was that Fraser River sockeye are most vulnerable to climate change during the egg and returning adult stages of the life cycle. A high temperature scenario was seen as imposing the greatest risk on sockeye stocks, particularly those that migrate to the upper reaches of the Fraser River system and spawn earlier in the summer. The inability to alter water temperature and the highly constrained nature of sockeye management, with competing gear types and sequential fisheries over a long distance, suggest the potential to mitigate adverse effects is limited. Fraser River sockeye already demonstrate a great deal of adaptive capacity in utilizing heterogeneous habitats in different river sub-basins. This adaptability points to the potential value of policies to make stocks more resilient to uncertain futures.