Major Biomass Components Research Articles

Synthetic Consortium of Escherichia coli for n-Butanol Production by Fermentation of the Glucose-Xylose Mixture.

The microbial production of n-butanol using glucose and xylose, the major components of plant biomass, can provide a sustainable and renewable fuel as crude oil replacement. However, Escherichia coli prefers glucose to xylose as programmed by carbohydrate catabolite repression (CCR). In this study, a synthetic consortium consisting of two strains was developed by transforming the CCR-insensitive strain into a glucose-selective strain and a xylose-selective strain. Furthermore, the dual culture was reshaped by distribution of the synthetic pathway of n-butanol into two strains. Consequently, the co-culture system enabled effective co-utilization of both sugars and production of 5.2 g/L n-butanol at 30 h. The result leads to the conversion yield and productivity accounting for 63% of the theoretical yield and 0.17 g L-1 h-1, respectively. Overall, the technology platform as proposed is useful for production of other value-added chemicals, which require complicated pathways for their synthesis by microbial fermentation of a sugar mixture.

A Tandem for Lignin-First Biorefinery

Heterogeneous catalysis is no longer restricted to the catalytic upgrading of recalcitrant lignin wastes from the pulping and paper industry. This discipline now offers innovative solutions for the lignocellulose deconstruction, generating "easy-to-upgrade" lignin streams along with cellulose pulps. In this issue of Joule , Beckham, Roman-Leshkov, and colleagues report the first example of "tandem" lignin-first biorefining in which the formation and extraction of lignin oligomers in addition to the reductive processes leading to further depolymerization and passivation of lignin fragments are performed in two-sequential flow-through reactors.

Selective chemical recovery from biomass under hydrothermal conditions using metal oxide nanocatalyst

This paper has two parts: The first part covers the review of previous researches on biomass fractionation based on mechanistic and kinetic viewpoints. Since the major components of biomass are cellulose and lignin, fractionation of each component is discussed. Kinetics and reaction mechanism of cellulose hydrolysis, glucose fractionation, and decomposition are also summarized. Based on the results of these basic studies, new processes of aldehyde recovery from cellulose/glucose and cresol addition method for fractionation from lignin are introduced. The second part of this paper proposes a new approach (original research) to decompose lignin and biomass with CeO2 nanocatalysts fabricated by supercritical hydrothermal synthesis method. Char formation decreased, and liquid product yield increased when the nanocatalyst, {001} surface exposed cubic CeO2 was used. This is probably because of the suppression of Friedel-Crafts reaction due to the oxidation of aldehydes, which could be the bridge molecules of phenolic structures.

Simultaneously separation of xylo-oligosaccharide and lignosulfonate from wheat straw magnesium bisulfite pretreatment spent liquor using ion exchange resin

For wheat straw, an ideal bio-refinery process is that all three major components of biomass could be efficiently utilized to make high value chemicals, MBSP could directly convert the hemicelluloses and lignin into xylo-oligosaccharides and lignosulfonate. However, these value-added compounds still present in spent liquor and thus should be isolated as an individual product. In present work, a simple and efficient ion exchange process was developed for separating xylo-oligosaccharides and lignosulfonate simultaneously from spent liquor. D354 resin was selected for its high adsorption capacity of magnesium lignosulfonate and remarkable selectivity. 93.09% of XOS and 98.03% of lignosulfonate were recovered from the treated spent liquor in a fixed bed column with D354 resin. Overall, 1 L of MBSP spent liquor could coproduce 9.5 g XOS and 74 g lignosulfonate. These results offer an opportunity for complete and effective utilization of biomass by a novel integrated process coupling of MBSP and ion-exchange process.

Microbial β-Glucosidases: Screening, Characterization, Cloning and Applications

Cellulose is the most abundant biomaterial in the biosphere and the major component of plant biomass. Cellulase is an enzymatic system required for conversion of renewable cellulose biomass into free sugar for subsequent use in different applications. Cellulase system mainly consists of three individual enzymes namely: endoglucanase, exoglucanase and β-glucosidases. β-Glucosidases are ubiquitous enzymes found in all living organisms with great biological significance. β-Glucosidases have also tremendous biotechnological applications such as biofuel production, beverage industry, food industry, cassava detoxification and oligosaccharides synthesis. Microbial β-glucosidases are preferred for industrial uses because of robust activity and novel properties exhibited by them. This review aims at describing the various biochemical methods used for screening and evaluating β-glucosidases activity from microbial sources. Subsequently, it generally highlights techniques used for purification of β-glucosidases. It then elaborates various biochemical and molecular properties of this valuable enzyme such as pH and temperature optima, glucose tolerance, substrate specificity, molecular weight, and multiplicity. Furthermore, it describes molecular cloning and expression of bacterial, fungal and metagenomic β-glucosidases. Finally, it highlights the potential biotechnological applications of β-glucosidases.

Association of gene expression with biomass content and composition in sugarcane.

About 64% of the total aboveground biomass in sugarcane production is from the culm, of which ~90% is present in fiber and sugars. Understanding the transcriptome in the sugarcane culm, and the transcripts that are associated with the accumulation of the sugar and fiber components would facilitate the modification of biomass composition for enhanced biofuel and biomaterial production. The Sugarcane Iso-Seq Transcriptome (SUGIT) database was used as a reference for RNA-Seq analysis of variation in gene expression between young and mature tissues, and between 10 genotypes with varying fiber content. Global expression analysis suggests that each genotype displayed a unique expression pattern, possibly due to different chromosome combinations and maturation amongst these genotypes. Apart from direct sugar- and fiber-related transcripts, the differentially expressed (DE) transcripts in this study belonged to various supporting pathways that are not obviously involved in the accumulation of these major biomass components. The analysis revealed 1,649 DE transcripts between the young and mature tissues, while 555 DE transcripts were found between the low and high fiber genotypes. Of these, 151 and 23 transcripts respectively, were directly involved in sugar and fiber accumulation. Most of the transcripts identified were up-regulated in the young tissues (2 to 22-fold, FDR adjusted p-value <0.05), which could be explained by the more active metabolism in the young tissues compared to the mature tissues in the sugarcane culm. The results of analysis of the contrasting genotypes suggests that due to the large number of genes contributing to these traits, some of the critical DE transcripts could display less than 2-fold differences in expression and might not be easily identified. However, this transcript profiling analysis identified full-length candidate transcripts and pathways that were likely to determine the differences in sugar and fiber accumulation between tissue types and contrasting genotypes.

BLISS: Shining a light on lignification in plants

ABSTRACTLignin is a polyphenolic polymer of the plant cell wall formed by the oxidative polymerization of 3 main monomers called monolignols that give rise to the lignin H-, G- and S-units. Together with cellulose and hemicelluloses, lignin is a major component of plant biomass that is widely exploited by humans in numerous industrial processes. Despite recent advances in our understanding of monolignol biosynthesis, our current understanding of the spatio-temporal regulation of their transport and polymerization is more limited. In a recent publication, we have reported the development of an original Bioorthogonal Labeling Imaging Sequential Strategy (BLISS) that allows us to visualize the simultaneous incorporation dynamics of H and G monolignol reporters into lignifying cell walls of the flax stem.11 Here, we extend the application of this strategy to other plant organs such as roots and rapidly discuss some of the contributions and perspectives of this new technique for improving our understanding of the lignification process in plants.

Mild pretreatment of yellow poplar biomass using sequential dilute acid and enzymatically-generated peracetic acid to enhance cellulase accessibility

Biomass contains cellulose, xylan and lignin in a complex interwoven structure that hinders enzymatic hydrolysis of the cellulose. To separate these components in yellow poplar biomass, we sequentially pretreated with dilute sulfuric acid and enzymatically-generated peracetic acid. In the first step, the dilute acid with microwave heating (140°C, 5 min) hydrolyzed 90% of xylan. The xylose yield in hydrolysate after dilute acid pretreatment was 83.1%. In the second step, peracetic acid (60°C, 6 h) removed up to 80% of lignin. This sequential pretreatment fractionated biomass into xylan and lignin, leaving a solid residue enriched in cellulose (~80%). The sequential pretreatment enhanced enzymatic digestibility of the cellulase by removal of the other components in biomass. The glucose yield after enzymatic hydrolysis was 90.5% at a low cellulase loading (5 FPU/g of glucan), which is 1.6 and 18 times higher than for dilute acid-pretreated biomass and raw biomass, respectively. This novel sequential pretreatment with dilute acid and peracetic acid efficiently separates the three major components of yellow poplar biomass, and reduces the amount of cellulase needed.

Alkaline Pretreatment Severity Leads to Different Lignin Applications in Sugar Cane Biorefineries

Lignin, a multifunctional major biomass component, has a prominent potential as feedstock to be converted into high value-added products. Lignin is available in high amounts as side streams during cellulosic ethanol production, and within the biorefinery context, it is important to assess its structural characteristics in order to explore its potential to replace some petroleum-based reactants. In this study, some important features were evaluated for different lignins such as lignin purity and the amounts of syringyl (S), guaiacyl (G), and p-hydroxyphenyl (H) units. Four alkaline lignins, generated from a pilot-scale pretreatment of sugar cane bagasse (NaOH 1.5%, 30 min), were evaluated according to the severity of the alkaline pretreatment (130 or 170 °C, with or without the addition of anthraquinone). The different pretreatments produced lignins with different chemical characteristics that can be used for different purposes in sugar cane biorefineries. As the severity of alkaline pretreatment increased...

Levulinic acid production integrated into a sugarcane bagasse based biorefinery using thermal-enzymatic pretreatment

Levulinic acid (LA) is a promising platform chemical that can be produced from C6-sugars of lignocellulose. However, direct conversion of lignocellulose leads to the predefined by-products furfural and a solid residue, composed of lignin and humins. Enabling independent conversion of the major biomass components would increase the flexibility in terms of the products of a biorefinery. Therefore, this work focuses on integrating LA production into a biorefinery, which fractionates the biomass with a thermal-enzymatic treatment using hot water and enzymes only. Besides a glucose solution, used for LA production, a hemicellulose rich hydrolysate and solvent free lignin were recovered. The yields for the C6-fractions after thermal and enzymatic treatment were 95.8mol% and 62.1mol%, respectively.The influence of temperature (160–200°C), residence time (3–90min) and acid concentration (0.25–1M) on LA synthesis, following thermal-enzymatic treatment was investigated by statistical methods, achieving a maximum LA yield of 67.7mol%.

Fermentation of model hemicelluloses by Prevotella strains and Butyrivibrio fibrisolvens in pure culture and in ruminal enrichment cultures.

Hemicelluloses are major components of plant biomass, but their fermentation in the rumens of cattle and other ruminants is poorly understood. We compared four species of the ruminally dominant genus Prevotella and the well-known hemicellulose utilizer, Butyrivibrio fibrisolvens, with respect to degradation of several isolated hemicelluloses (xylans, glucomannan, and xyloglucan). We also performed Illumina sequencing of the V3/V4 region of 16S rRNA genes to determine the relative proportions of Prevotella and Butyrivibrio in hemicellulose-fed enrichment cultures inoculated from ruminal contents of dairy cattle fed a total mixed ration (TMR) rich in hemicelluloses. Results confirmed the xylan fermentation and butyrate production abilities of B. fibrisolvens. Despite their reputation as generalist fermenters, the Prevotella strains poorly fermented these hemicelluloses but exhibited dramatic differences in fermentation end products. Prevotella was much less abundant in mixed bacterial enrichment cultures fed the same TMR than in the ruminal inoculum, yet Prevotella was again the most abundant genus in enrichment cultures fed xylans. By contrast, glucomannan fermentations were dominated by Streptococcus sp. Genera known for hemicellulose degradation (Butyrivibrio, Ruminococcus, and Fibrobacter) were not significantly enriched on these hemicelluloses. Substantial differences in fermentation end product distribution from the different hemicelluloses were observed, which would likely affect nutrient partitioning in the host animal. Differences in community composition between in vitro hemicellulose enrichments and inoculum samples emerged at every phylogenetic level, suggesting that in vitro conditions provide unique selective pressures on the bacterial community and also that ruminal bacteria exhibit specialization with respect to hemicellulose utilization.

Flux balance analysis of photoautotrophic metabolism: Uncovering new biological details of subsystems involved in cyanobacterial photosynthesis

We have constructed and experimentally tested a comprehensive genome-scale model of photoautotrophic growth, denoted iSyp821, for the cyanobacterium Synechococcus sp. PCC 7002. iSyp821 incorporates a variable biomass objective function (vBOF), in which stoichiometries of the major biomass components vary according to light intensity. The vBOF was constrained to fit the measured cellular carbohydrate/protein content under different light intensities. iSyp821 provides rigorous agreement with experimentally measured cell growth rates and inorganic carbon uptake rates as a function of light intensity. iSyp821 predicts two observed metabolic transitions that occur as light intensity increases: 1) from PSI-cyclic to linear electron flow (greater redox energy), and 2) from carbon allocation as proteins (growth) to carbohydrates (energy storage) mode. iSyp821 predicts photoautotrophic carbon flux into 1) a hybrid gluconeogenesis-pentose phosphate (PP) pathway that produces glycogen by an alternative pathway than conventional gluconeogenesis, and 2) the photorespiration pathway to synthesize the essential amino acid, glycine. Quantitative fluxes through both pathways were verified experimentally by following the kinetics of formation of 13C metabolites from 13CO2 fixation. iSyp821 was modified to include changes in gene products (enzymes) from experimentally measured transcriptomic data and applied to estimate changes in concentrations of metabolites arising from nutrient stress. Using this strategy, we found that iSyp821 correctly predicts the observed redistribution pattern of carbon products under nitrogen depletion, including decreased rates of CO2 uptake, amino acid synthesis, and increased rates of glycogen and lipid synthesis.

High-Throughput Profiling of the Fiber and Sugar Composition of Sugarcane Biomass

Lignocellulosic biomass from sugarcane (Saccharum spp. hybrids) could potentially be a major feedstock for second-generation biofuel production. Consequently, selecting sugarcane varieties with favorable biomass characteristics, typically less enzymatic recalcitrance and better saccharification yield without sugar-yield penalty, will be important in sugarcane breeding. Economical and high-throughput techniques for profiling the major biomass components of this complex system will facilitate selection of clones with ideal lignocellulosic composition from large numbers of genotypes in breeding programs. We used a combined high-throughput profiling approach to evaluate the biomass composition of samples from a sugarcane germplasm collection. This employed near-infrared (NIR) spectroscopy for fiber characterization and high-performance liquid chromatography (HPLC) for determining the sugar content in juice. The results for 331 samples, from a diverse sugarcane population of 186 genotypes, derived from 143 parents of different genetic backgrounds, showed that high-quality NIR spectroscopic predictions were feasible for cellulose, hemicellulose, lignin, and extractives values in fiber, and sugars in juice were suitably analyzed by HPLC. The analysis of total biomass indicated that this NIR- and HPLC-based high-throughput method allowed a robust phenotypic assessment of a large number of samples for the key biomass traits in the sugarcane system, including total dry biomass, fiber, sugar content, and theoretical ethanol yields, and could potentially become the method of choice for sugarcane germplasm screening in breeding programs targeting the support of biofuel production.

Deadwood stocks increase with selective logging and large tree frequency in Gabon.

Deadwood is a major component of aboveground biomass (AGB) in tropical forests and is important as habitat and for nutrient cycling and carbon storage. With deforestation and degradation taking place throughout the tropics, improved understanding of the magnitude and spatial variation in deadwood is vital for the development of regional and global carbon budgets. However, this potentially important carbon pool is poorly quantified in Afrotropical forests and the regional drivers of deadwood stocks are unknown. In the first large-scale study of deadwood in Central Africa, we quantified stocks in 47 forest sites across Gabon and evaluated the effects of disturbance (logging), forest structure variables (live AGB, wood density, abundance of large trees), and abiotic variables (temperature, precipitation, seasonality). Average deadwood stocks (measured as necromass, the biomass of deadwood) were 65Mg ha-1 or 23% of live AGB. Deadwood stocks varied spatially with disturbance and forest structure, but not abiotic variables. Deadwood stocks increased significantly with logging (+38Mg ha-1 ) and the abundance of large trees (+2.4Mg ha-1 for every tree >60cm dbh). Gabon holds 0.74Pg C, or 21% of total aboveground carbon in deadwood, a threefold increase over previous estimates. Importantly, deadwood densities in Gabon are comparable to those in the Neotropics and respond similarly to logging, but represent a lower proportion of live AGB (median of 18% in Gabon compared to 26% in the Neotropics). In forest carbon accounting, necromass is often assumed to be a constant proportion (9%) of biomass, but in humid tropical forests this ratio varies from 2% in undisturbed forest to 300% in logged forest. Because logging significantly increases the deadwood carbon pool, estimates of tropical forest carbon should at a minimum use different ratios for logged (mean of 30%) and unlogged forests (mean of 18%).

Evolution properties of cellulose- and lignin-derived pyrolysis tars after interacting with coal chars

The reforming characteristics of biomass volatiles on anthracite chars were investigated by comparing the structural evolution of tars derived from cellulose and lignin as the major biomass components. In a two-stage quartz reactor, the pyrolysis volatiles of cellulose and lignin were produced in the first stage and then reformed in the second stage with or without the presence of anthracite chars between 600 and 900°C. The results show that the presence of anthracite chars enhanced the destruction of volatiles of both feedstocks. Furthermore, the tar yields of lignin showed a slower decreasing trend with temperature than those of cellulose, suggesting that the lignin volatiles were more refractory to be reformed. The lignin tars had higher molecular weights and contained higher percentage of compounds with large aromatic ring systems (≥3 fused benzene rings) than cellulose tars in the studied temperature range. Compositional analysis revealed that tars of both feedstocks experienced the transition from phenolic compounds to polycyclic aromatic hydrocarbons with increasing temperature. The surface areas of anthracite chars were reduced because of coke deposition after interacting with the volatiles of both feedstocks below 800°C, above which the net gasification of chars took place.

A Critical Review on Hemicellulose Pyrolysis

AbstractFast pyrolysis is a promising thermochemical technology that breaks down renewable and abundant lignocellulosic biomass into a primary liquid product (bio‐oil) in seconds. The bio‐oil can then be potentially catalytically upgraded into transportation fuels and multiple commodity chemicals. Hemicellulose is one of the three major components of lignocellulosic biomass and is characterized as a group of cell wall polysaccharides that are neither cellulose nor pectin. The composition and structural features of hemicellulose (mixture of different heterogeneous polysaccharides) and different specific hemicellulose polysaccharides are reviewed. Particular focus is then given to reviewing the status of hemicellulose pyrolysis in terms of experimental investigations, reaction mechanisms, and kinetic modeling. For each aspect, recent results, challenges, and future prospects are addressed.

Heterogeneously catalyzed lignin depolymerization

Biomass offers a unique resource for the sustainable production of bio-derived chemical and fuels as drop-in replacements for the current fossil fuel products. Lignin represents a major component of lignocellulosic biomass, but is particularly recalcitrant for valorization by existing chemical technologies due to its complex cross-linking polymeric network. Here, we highlight a range of catalytic approaches to lignin depolymerisation for the production of aromatic bio-oil and monomeric oxygenates.

Flux Balance Analysis of Plant Metabolism: The Effect of Biomass Composition and Model Structure on Model Predictions.

The biomass composition represented in constraint-based metabolic models is a key component for predicting cellular metabolism using flux balance analysis (FBA). Despite major advances in analytical technologies, it is often challenging to obtain a detailed composition of all major biomass components experimentally. Studies examining the influence of the biomass composition on the predictions of metabolic models have so far mostly been done on models of microorganisms. Little is known about the impact of varying biomass composition on flux prediction in FBA models of plants, whose metabolism is very versatile and complex because of the presence of multiple subcellular compartments. Also, the published metabolic models of plants differ in size and complexity. In this study, we examined the sensitivity of the predicted fluxes of plant metabolic models to biomass composition and model structure. These questions were addressed by evaluating the sensitivity of predictions of growth rates and central carbon metabolic fluxes to varying biomass compositions in three different genome-/large-scale metabolic models of Arabidopsis thaliana. Our results showed that fluxes through the central carbon metabolism were robust to changes in biomass composition. Nevertheless, comparisons between the predictions from three models using identical modeling constraints and objective function showed that model predictions were sensitive to the structure of the models, highlighting large discrepancies between the published models.

Engineering of Saccharomyces cerevisiae to utilize xylan as a sole carbohydrate source by co-expression of an endoxylanase, xylosidase and a bacterial xylose isomerase.

Xylan represents a major component of lignocellulosic biomass, and its utilization by Saccharomyces cerevisiae is crucial for the cost effective production of ethanol from plant biomass. A recombinant xylan-degrading and xylose-assimilating Saccharomyces cerevisiae strain was engineered by co-expression of the xylanase (xyn2) of Trichoderma reesei, the xylosidase (xlnD) of Aspergillus niger, the Scheffersomyces stipitis xylulose kinase (xyl3) together with the codon-optimized xylose isomerase (xylA) from Bacteroides thetaiotaomicron. Under aerobic conditions, the recombinant strain displayed a complete respiratory mode, resulting in higher yeast biomass production and consequently higher enzyme production during growth on xylose as carbohydrate source. Under oxygen limitation, the strain produced ethanol from xylose at a maximum theoretical yield of ~90%. This study is one of only a few that demonstrates the construction of a S. cerevisiae strain capable of growth on xylan as sole carbohydrate source by means of recombinant enzymes.

Total Utilization of Miscanthus Biomass, Lignin and Carbohydrates, Using Earth Abundant Nickel Catalyst

Lignin as a polymer of monomeric aromatic compounds retains great potential to be a source for liquid fuels and valuable chemicals. However, lignin from biomass has been traditionally treated as a waste byproduct and in most applications burned for its heat value. In this work, we report the catalytic conversion of lignin in Miscanthus into aromatic products by using earth-abundant Ni catalyst supported on activated carbon, under relatively mild conditions. The special ferulate linkage in grasses gives methyl ferulate ester and its derivatives, which were not observed for wood biomass substrates. By modification of the reaction conditions, saturated or unsaturated branched products can be obtained selectively. Optimal conditions give over 68% yield of select aromatic products from lignin. Furthermore, after lignin depolymerization and upgrading, the carbohydrates of miscanthus were recovered as a solid residue, which upon treatment with iron chloride produced useful platform chemicals (furfurals and levulinic acid). On the basis of our study, all three major components of biomass (lignin, cellulose and hemicellulose) are effectively utilized, with an overall 55% conversion of total accessible biomass into high value chemicals with 98% mass balance.