Cotton yield is sometimes unresponsive to high temperature (HT) that induce significant reductions in fruit retention. To investigate the underlying mechanisms, a greenhouse experiment was conducted with two temperature regimes (control, control treatment, 28 °C; HT, 34 °C) for 7 days. Results showed HT did not significantly influence cotton yield, but remarkably reduce boll number and increase boll weight. 13C distribution ratio of the leaf subtending to cotton boll (LSCB) decreased while that of cotton boll increased under HT. Transcriptomic and proteomic analyses of LSCB revealed up-regulated genes involved in cytokinin and jasmonic acid synthesis, as well as SWEET15 (GH_D01G0218), which positively regulated photosynthesis and transport photosynthate, ultimately leading to increased boll weight. After 7 days recovering from HT, 13C distribution ratio of LSCB increased while that of cotton boll decreased. However, the boll weight still increased, which was related to the increased amylase and sucrose phosphate synthase activities and up-regulated sucrose transport genes in main-stem leaf and capsule wall. Thus, both the accelerated sucrose synthesis and transport in LSCB under HT and the increased sucrose supply ability in main-stem leaf and capsule wall after recovering from HT contributed to an increased boll weight, which finally maintained cotton yield.
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