Macroinvertebrate communities have been influenced by chemical substances, originated from petrochemical developments, that caused many problems in the marine biota. This study investigated the surface sediments of Nayband National Park and Bay (northern Persian Gulf) for polycyclic aromatic hydrocarbons (PAHs) and total petroleum hydrocarbons (TPHs) in terms of their distribution, source, and impacts on benthic macroinvertebrate assemblages. To this end, a total of 180 surface sediment samples from 20 stations were collected using Van-Veen grab sampler during winter 2018. The concentration of PAHs, TPHs, total organic carbon (TOC). and total organic matter (TOM) were evaluated, and grain size measurements were conducted on sediment samples in this study. Benthic macroinvertebrates were then identified in terms of presence and distribution. The results indicated that coarse granulometric fractions of sands were prevalence in all samples stations. The total concentration of PAHs ranged from 47.57 to 657.68ng/g and TPHs 5.72 to 42.16µg/g dw. The risk of ΣPAHs and TPHs in the sediments was relatively low to moderate according to the sediment quality guidelines. Analysis of the results revealed a significant negative correlation between ΣPAHs (R-value = - 0.917; P < 0.01), TPHs (R-value = - 0.849; P < 0.01) and macrofaunal abundance. Findings demonstrated that the species richness and abundance were at the lowest levels in stations where concentrations of PAHs, TPHs, TOC, and TOM were in the highest values, suggesting that these contaminants could negatively influence the benthic organisms in Nayband National Park and Bay. The results of correspondence analysis (CA) and principal component analysis (PCA) analysis showed that sedimentary habitats in Nayband National Park and Bay are being negatively affected by PAHs and TPHs, released from Pars Special Economic Energy Zone (PSEEZ). Moreover, the marine biotic index (AMBI) and Shannon-Weiner Diversity (H') results suggest that Nayband National Park and Bay can be classified as slightly to moderate polluted area. In conclusion, Northern Persian Gulf is significantly affected by oil industry developments and petrochemical activities. The unique ecosystem like Nayband National Park and Bay has been in a cautious status in terms of the PSEEZ pollutants and the levels of PAHs and TPHs concentration, warning that urgent environmental programs should be considered to protect the diversity and ecology of this valuable marine systems.