Near infrared low-level laser (nirLLL) irradiation penetrates scalp and skull. It was shown to be able to reduce damage from experimentally induced stroke in animals and to improve memory in middle-aged mice. It was also reported to improve the outcome in human cases of acute stroke. In this study we evaluated whether transcranial application of the nirLLL (transcranial laser stimulation-TLS) can modulate the excitability of the motor cortex (M1) as measured by transcranial magnetic stimulation (TMS). In the 1st part of the study, motor evoked potentials (MEPs) from the right abductor pollicis brevis (APB) muscle, elicited by single-pulse TMS applied to the left M1 (intensity 120% of the resting motor threshold, rMT) were measured at baseline and every 5 min (up to 30 min) after the TLS, in 18 healthy subjects. For TLS, the nirLLL (wavelength 905 nm, pulse frequency 3 kHz, power density of 50 mW/cm 2 , single dose of 3 J/cm 2 ) was applied for 60 s over a circular area 3 cm in diameter cantered at left M1 APB hot-spot. In the 2 nd part of the study, the MEPs were recorded in the same way in 6 subjects who were found to have very high rMT and poor response to TLS in the Exp1. The TLS parameters were the same except pulse frequency that was increased to 5 kHz which increased total nirLLL delivered (single dose of 4.5 J/cm 2 ). All applied dosed were within the recommended safety limits for human application of nirLLL in physical medicine. The study was conducted in accordance with the Declaration of Helsinki and was approved by the local ethics committee. In the 1st part, the most prominent MEP suppression was within time-window 10–25 min following TLS ( Fig. 1 A). Total of 12 subjects (66.7%) had MEP sizes below baseline level in at least 4 out of 7 (i.e. >50%) post-TLS time points-Responders. ANOVA and post hoc pair-wise analyses showed significant reduction of post-TLS MEP sizes related to baseline in Responders ( Fig. 1 B). The only difference between Responders and Non-Responders was in rMT (54.9 ± 5.8, and 63.2 ± 8.7, respectively; t (16) = 2.41, p = 0.029). For all subjects together, average post-TLS MEP size correlated significantly with rMT (Spearman R = 0.499, p = 0.035). In the 2nd part, with higher intensity of TLS, 5 subjects were Responders, 4 of them who were Non-Responders in the 1st part, and 1 who was Responder from the beginning but had much larger MEP suppression in the 2nd part. Average post-TLS MEP sizes in these 5 Responders dropped significantly(t (4) = 5.105, p = 007) in comparison to the 1st part. The M1 excitability was found to be reduced after TLS in dose dependent manner. These findings may give insight into the mechanisms of nirLLL effects in the human cerebral cortex, also suggesting more suitable applications of TLS in clinical settings.