Lysed Mitochondria Research Articles

Differential mitochondrial proteomic analysis of A549 cells infected with avian influenza virus subtypes H5 and H9

BackgroundBoth the highly pathogenic avian influenza (HPAI) H5N1 and low pathogenic avian influenza (LPAI) H9N2 viruses have been reported to cross species barriers to infect humans. H5N1 viruses can cause severe damage and are associated with a high mortality rate, but H9N2 viruses do not cause such outcomes. Our purpose was to use proteomics technology to study the differential expression of mitochondrial-related proteins related to H5N1 and H9N2 virus infections.MethodsAccording to the determined viral infection titer, A549 cells were infected with 1 multiplicity of infection virus, and the mitochondria were extracted after 24 h of incubation. The protein from lysed mitochondria was analyzed by the BCA method to determine the protein concentration, as well as SDS-PAGE (preliminary analysis), two-dimensional gel electrophoresis, and mass spectrometry. Differential protein spots were selected, and Western blotting was performed to verify the proteomics results. The identified proteins were subjected to GO analysis for subcellular localization, KEGG analysis for functional classification and signaling pathways assessment, and STRING analysis for functional protein association network construction.ResultsIn the 2-D gel electrophoresis analysis, 227 protein spots were detected in the H5N1-infected group, and 169 protein spots were detected in the H9N2-infected group. Protein spots were further subjected to mass spectrometry identification and removal of redundancy, and 32 differentially expressed proteins were identified. Compared with the H9N2 group, the H5N1-infected group had 16 upregulated mitochondrial proteins and 16 downregulated proteins. The differential expression of 70-kDa heat shock protein analogs, short-chain enoyl-CoA hydratase, malate dehydrogenase, and ATP synthase was verified by Western blot, and the results were consistent with the proteomics findings. Functional analysis indicated that these differentially expressed proteins were primarily involved in apoptosis and metabolism.ConclusionsCompared with their expression in the H9N2 group, the differential expression of eight mitochondrial proteins in the H5N1 group led to host T cell activation, antigen presentation, stress response, ATP synthesis and cell apoptosis reduction, leading to higher pathogenicity of H5N1 than H9N2.

Physiological Levels of Nitric Oxide Diminish Mitochondrial Superoxide. Potential Role of Mitochondrial Dinitrosyl Iron Complexes and Nitrosothiols.

Mitochondria are the major source of superoxide radicals and superoxide overproduction contributes to cardiovascular diseases and metabolic disorders. Endothelial dysfunction and diminished nitric oxide levels are early steps in the development of these pathological conditions. It is known that physiological production of nitric oxide reduces oxidative stress and inflammation, however, the precise mechanism of “antioxidant” effect of nitric oxide is not clear. In this work we tested the hypothesis that physiological levels of nitric oxide diminish mitochondrial superoxide production without inhibition of mitochondrial respiration. In order to test this hypothesis we analyzed effect of low physiological fluxes of nitric oxide (20 nM/min) on superoxide and hydrogen peroxide production by ESR spin probes and Amplex Red in isolated rat brain mitochondria. Indeed, low levels of nitric oxide substantially attenuated both basal and antimycin A-stimulated production of reactive oxygen species in the presence of succinate or glutamate/malate as mitochondrial substrates. Furthermore, slow releasing NO donor DPTA-NONOate (100 μM) did not change oxygen consumption in State 4 and State 3. However, the NO-donor strongly inhibited oxygen consumption in the presence of uncoupling agent CCCP, which is likely associated with inhibition of the over-reduced complex IV in uncoupled mitochondria. We have examined accumulation of dinitrosyl iron complexes and nitrosothiols in mitochondria treated with fast-releasing NO donor MAHMA NONOate (10 μM) for 30 min until complete release of NO. Following treatment with NO donor, mitochondria were frozen for direct detection of dinitrosyl iron complexes using Electron Spin Resonance (ESR) while accumulation of nitrosothiols was measured by ferrous-N-Methyl-D-glucamine dithiocarbamate complex, Fe(MGD)2, in lysed mitochondria. Treatment of mitochondria with NO-donor gave rise to ESR signal of dinitrosyl iron complexes while ESR spectra of Fe(MGD)2 supplemented mitochondrial lysates showed presence of both dinitrosyl iron complexes and nitrosothiols. We suggest that nitric oxide attenuates production of mitochondrial superoxide by post-translational modifications by nitrosylation of protein cysteine residues and formation of protein dinitrosyl iron complexes with thiol-containing ligands and, therefore, nitric oxide reduction in pathological conditions associated with endothelial dysfunction may increase mitochondrial oxidative stress.

Topology and proximity relationships of yeast mitochondrial ATP synthase subunit 8 determined by unique introduced cysteine residues.

We have used site-directed chemical labelling to demonstrate the membrane topology and to identify neighbouring subunits of subunit 8 (Y8) in yeast mitochondrial ATP synthase (mtATPase). Unique cysteine residues were introduced at the N or C-terminus of Y8 by site-directed mutagenesis. Expression and targeting to mitochondria in vivo of each of these variants in a yeast Y8 null mutant was able to restore activity to an otherwise nonfunctional ATP synthase complex. The position of each introduced cysteine relative to the inner mitochondrial membrane was probed with thiol-specific nonpermeant and permeant reagents in both intact and lysed mitochondria. The data indicate that the N-terminus of Y8 is located in the intermembrane space of mitochondria whereas the C-terminus is located within the mitochondrial matrix. The proximity of Y8 to other proteins of mtATPase was tested using heterobifunctional cross-linking reagents, each with one thiol-specific reactive group and one nonspecific, photoactivatible reactive group. These experiments revealed the proximity of the C-terminal domain of Y8 to subunits d and f, and that of the N-terminal domain to subunit f. It is concluded that Y8 possesses a single transmembrane domain which extends across the inner membrane of intact mitochondria. As subunit d is a likely component of the stator stalk of mitochondrial ATP synthase, we propose, on the basis of the observed cross-links, that Y8 may also be part of the stator stalk.

Trimetazidine effects on the damage to mitochondrial functions caused by ischemia and reperfusion

Trimetazidine (TMZ) is an anti-ischemic compound whose precise mode of action is unknown, although several studies have suggested a metabolic effect, and there have been reports of protection of mitochondria against oxidative stress damage. Using a Langendorff rat heart model, we examined the effects of TMZ on the mitochondrial damage following 30 minutes of ischemia and 5 minutes of reperfusion. Mitochondrial respiration with succinate, glutamate-malate and ascorbate-N,N,N′,N′-tetramethylphenylenediamine (TMPD) as substrates was significantly decreased following ischemia-reperfusion. Preperfusion with 10 −5 M TMZ had no effect on these rates in normoxic or ischemic hearts. However, 10 −3 M TMZ significantly decreased the glutamate-malate rate in mitochondria from normoxic hearts, and this rate was not further decreased following ischemia-reperfusion, and 10 −3 M TMZ also partially protected ascorbate-TMPD activity. The effect on glutamate-malate was probably due to an inhibition of complex I by TMZ, which specifically inhibited reduced nicotinamide-adenine-dinucleotide-cytochrome c reductase and complex I in lysed mitochondria. We also studied the effects of TMZ on the activity of pyruvate dehydrogenase (PDH) in normoxic and ischemic hearts perfused with 0.5 m M palmitate, which caused the enzyme to be almost completely inactivated. After short periods of ischemia (10–20 minutes) the PDH inactivation by palmitate was progressively lost. Preperfusion with 10 −5 M TMZ had a tendency to decrease lactate dehydrogenase release, accompanied by a maintenance of the inhibition of PDH by palmitate. This may allow the heart to oxidize fatty acids preferentially during reperfusion, hence removing possible toxic acyl esters.

Trimetazidine effects on the damage to mitochondrial functions caused by ischemia and reperfusion

Trimetazidine (TMZ) is an anti-ischemic compound whose precise mode of action is unknown, although several studies have suggested a metabolic effect, and there have been reports of protection of mitochondria against oxidative stress damage. Using a Langendorff rat heart model, we examined the effects of TMZ on the mitochondrial damage following 30 minutes of ischemia and 5 minutes of reperfusion. Mitochondrial respiration with succinate, glutamate-malate and ascorbate-N,N,N',N'-tetramethylphenylenediamine (TMPD) as substrates was significantly decreased following ischemia-reperfusion. Preperfusion with 10(-5) M TMZ had no effect on these rates in normoxic or ischemic hearts. However, 10(-3) M TMZ significantly decreased the glutamate-malate rate in mitochondria from normoxic hearts, and this rate was not further decreased following ischemia-reperfusion, and 10(-3) M TMZ also partially protected ascorbate-TMPD activity. The effect on glutamate-malate was probably due to an inhibition of complex I by TMZ, which specifically inhibited reduced nicotinamide-adenine-dinucleotide-cytochrome c reductase and complex I in lysed mitochondria. We also studied the effects of TMZ on the activity of pyruvate dehydrogenase (PDH) in normoxic and ischemic hearts perfused with 0.5 mM palmitate, which caused the enzyme to be almost completely inactivated. After short periods of ischemia (10-20 minutes) the PDH inactivation by palmitate was progressively lost. Preperfusion with 10(-5) M TMZ had a tendency to decrease lactate dehydrogenase release, accompanied by a maintenance of the inhibition of PDH by palmitate. This may allow the heart to oxidize fatty acids preferentially during reperfusion, hence removing possible toxic acyl esters.

The ethanol-inducible YAT1 gene from yeast encodes a presumptive mitochondrial outer carnitine acetyltransferase.

The gene YAT1 from Saccharomyces cerevisiae encodes a protein of 688 amino acids which displays significant sequence similarity to vertebrate L-carnitine acyltransferases and yeast inner mitochondrial L-carnitine acetyltransferase. Steady state levels of the respective mRNA are low during growth on glucose or galactose, derepressed on glycerol, and significantly induced when ethanol or acetate are the only carbon sources. The YAT1 promotor region confers the identical carbon source dependence also on the expression of beta-galactosidase when cloned 5' to the Escherichia coli lacZ-coding region. An antiserum directed against a beta-galactosidase/Yat1p fusion protein recognizes a protein of 78-kDa molecular mass in the mitochondrial fraction from yeast. In vitro translated Yat1p, which lacks a cleavable presequence, binds to mitochondria in a protease-sensitive location in a standard in vitro import assay. Deletion of the single copy gene in a haploid yeast strain yields no obvious phenotype with any carbon source. Carnitine acetyltransferase activities of intact mitochondria from a YAT1 deletion mutant are slightly lower than wild type, but are approximately alike in lysed mitochondria from mutant and control cells. Thus, the novel gene is nonessential and likely to code for a minor mitochondrial outer carnitine acetyltransferase.

Dihydroorotate induces Ca2+ release from rat liver mitochondria: a contribution to the mechanism of alloxan-induced Ca2+ release.

The present work deals with the effects of alloxan on rat liver mitochondria, involving formation of toxic oxygen derivatives and Ca2+ release, and its relations to a physiological pathway, pyrimidine biosynthesis, particularly dihydroorotate dehydrogenation. Ca2+ release by intact isolated mitochondria was studied and redox transfer from solubilized mitochondria to 2,6-dichloroindophenol in the presence of cyanide. In intact mitochondria 5mM dihydroorotate caused a Ca2+ efflux comparable to 2mM alloxan. Both effects were suppressed by orotate, a potent inhibitor of dihydroorotate dehydrogenase, and by ADP, an inhibitor of the alloxan effects. In lysed mitochondria orotate but not ADP inhibited ubiquinone-linked reduction of 2,6-dichloroindophenol with dihydroorotate and with alloxan in a concentration-dependent manner. It is concluded that in vitro part of the redox cycling of alloxan is catalysed by dihydroorotate dehydrogenase whereas the nonsuppressible part reacts nonenzymatically. Without ADP the respiratory control blocks the reoxidation of coenzyme Q via the respiratory chain, thus giving preference to the regeneration by artificial electron acceptors, e.g. oxygen, yielding superoxide radicals and hydrogen peroxide, a notorious inducer of Ca2+ release. In vivo the enzymatic reoxidation of reduced alloxan by dihydroorotate dehydrogenase may be superior to the non-enzymatic pathway since the nonenzymatic fraction of reoxidation decreases with decreasing alloxan concentration.

Pyruvate Dehydrogenase Complexes from Ricinus communis Endosperm

Summary The pyruvate dehydrogenase complex was isolated, partially purified and characterized from mitochondria of germinating and developing endosperm of castor oil seeds ( Ricinus communis var. N5). The complex required coenzyme A, thiamine pyrophosphate, NAD + and a divalent cation for activity which was optimal at pH 7.0–7.4. The Michaelis constants were 51, 3 and 90μM for NAD + , coenzyme A and pyruvate, respectively. There was competitive inhibition between NADH (K i = 15μM) and NAD + , as well as acetyl-CoA (K i = 20μM) and CoA. Incubation of lysed mitochondria with ATP phosphorylated and inactivated the complex. A pyruvate dehydrogenase-kinase transfers the γ-phosphate of ATP to the complex. Pyruvate, dichloroacetate and EDTA inhibited this phosphorylation. Reactivation (dephosphorylation) occurred after treatment with Mg 2+ . Dephosphorylation was inhibited by fluoride. Western blots revealed no detectable difference in subunit structure of PDC from mitochondria of both germinating and developing tissue. The plastid enzyme subunit structure was significantly different from the mitochondrial complex. Results of these studies indicate that the pyruvate dehydrogenase complex from mitochondria of the two tissue types exhibit similar characteristics and regulation, but are very distinct from the plastid complex.

Translation of polyuridylic acid in lysed mitochondria

After osmotic shock with 50 mM Tricine buffer (pH 7.9), isolated mitochondria from D. Melanogaster embryos are treated with a low concentration of Triton X-100 (25 micrograms/mg of protein). The lysed mitochondria are still capable of RNA and protein synthesis. While incorporation of labeled precursor is often higher in lysed than in intact mitochondria, neosynthesized proteins exhibit similar electrophoretic patterns. Studies of labeled precursor incorporation in the presence of various effectors indicate a better accessibility to the translation machinery in lysed mitochondria than in intact mitochondria. Such a system has proven capable of translating an exogenous synthetic mRNA, i.e., poly (U).

Characteristics of Glutamate Dehydrogenase in Mitochondria Prepared from Corn Shoots

The amination of alpha-ketoglutarate (alpha-KG) by NADH-glutamate dehydrogenase (GDH) obtained from Sephadex G-75 treated crude extracts from shoots of 5-day-old seedlings was stimulated by the addition of Ca(2+). The NADH-GDH purified 161-fold with ammonium sulfate, DEAE-Toyopearl, and Sephadex G-200 was also activated by Ca(2+) in the presence of 160 micromolar NADH. However, with 10 micromolar NADH, Ca(2+) had no effect on the NADH-GDH activity. The deamination reaction (NAD-GDH) was not influenced by the addition of Ca(2+).About 25% of the NADH-GDH activity was solubilized from purified mitochondria after a simple osmotic shock treatment, whereas the remaining 75% of the activity was associated with the mitochondrial membrane fraction. When the lysed mitochondria, mitochondrial matrix, or mitochondrial membrane fraction was used as the source of NADH-GDH, Ca(2+) had little effect on its activity. The mitochondrial fraction contained about 155 nanomoles Ca per milligram of mitochondrial protein, suggesting that the NADH-GDH in the mitochondria is already in an activated form with regard Ca(2+). In a simulated in vitro system using concentrations of 6.4 millimolar NAD, 0.21 millimolar NADH, 5 millimolar alpha-KG, and 5 millimolar glutamate thought to occur in the mitochondria, together with 1 millimolar Ca(2+), 10 and 50 millimolar NH(4) (+), and purified enzyme, the equilibrium of GDH was in the direction of glutamate formation.

Inhibition of Ca2+ of carbamoylphosphate synthetase (ammonia).

The effect of Ca2+ ions on carbamoylphosphate synthetase (ammonia) (EC 6.3.4.16) of rat liver mitochondria was studied. In lysed mitochondria, carbamoylphosphate synthetase (ammonia) was inhibited by Ca2+ ions. In intact rat liver mitochondria, the rate of citrulline production from added ammonia, ornithine, and bicarbonate was inversely correlated with the magnitude of the intramitochondrial concentration of Ca2+. This effect was found at concentrations of Ca2+ which are within the physiological range. The inhibition was reversed by added Mg2+ and was not due to effects of Ca2+ on mitochondrial energy production. It is proposed that the activity of carbamoylphosphate synthetase (ammonia) may be modulated in vivo by changes in the concentration of Ca2+ ions in the mitochondrial matrix.

Glutamate and aspartate transport in rat brain mitochondria.

1. Rat brain mitochondria did not swell in iso-osmotic solutions of ammonium or potassium (plus valinomycin) glutamate or aspartate, with or without addition of uncouplers. 2. Glutamate was able to reduce intramitochondrial NAD(P)(+); aspartate was able to cause partial re-oxidation. 3. These effects were inhibited by threo-hydroxy-aspartate in whole but not in lysed mitochondria. 4. The existence of a ;malate-aspartate shuttle' for the oxidation of extramitochondrial NADH was demonstrated. This shuttle requires the net exchange of glutamate for aspartate across the mitochondrial membrane. 5. Extramitochondrial glutamate did not inhibit intramitochondrial glutaminase under conditions in which the inhibition in lysed mitochondria was virtually complete. 6. The glutaminase activity of these mitochondria was not energy-dependent. 7. We conclude that these mitochondria do not possess a glutamate-hydroxyl antiporter similar to that of liver mitochondria nor a glutamate-glutamine antiporter similar to that of pig kidney mitochondria, but that they do possess a glutamate-aspartate antiporter.

Titration of mitochondrial buffer by accumulated anions

Acidimetric titration of intact rat liver mitochondria discloses a buffer power of about 45 mEquiv per g between pH 7 and 8, the value rises to 60 mEquiv per g per pH unit after lysis using Triton X-100. The existence and properties of this buffer system have been related to mitochondrial anion accumulation. The uptake of permeant anions by mitochondria occurs to a charge-dependent extent and they are in electrochemical equilibrium with each other and the protons as in a Donnan system. Adding permeant anion causes the intramitochondrial anion content to rise towards a saturation level, the inside to outside concentration ratio falls and concomitantly the transmembrane proton gradient diminishes, making the interior less alkaline. The falling internal pH is associated with protonation of the internal buffer, thus providing a second method for measuring the buffer power, a method which also tests the arguments used in the calculations. The titration curve is constructed by relating the internal pH (deduced from the permeant anion ratio) to the total internal anion equivalents which in turn determines the ionization state of the buffer because the sum of the internal anion equivalents, including the buffer anion, equals the equivalents of internal cation. The buffer power so measured agrees with the acidimetric method applied to lysed mitochondria. The disparity between the acidimetric data from lysed and unlysed mitochondria follows theoretical predictions.

Bio-oxidation of linoleic acid via methylmalonyl-CoA.

AbstractUnsaturated long‐chain fatty acids are oxidized more rapidly than are saturated fatty acids of similar chain length in intact animals and isolated mitochondria. Gamma‐oxidation of the 3‐dodecenoic acid intermediate in beta‐oxidation of oleate would yield propionate which is metabolized via methylmalonate.14C‐labeled fatty acids were administered to intact rats, muscle homogenates and lysed mitochondria. Methylmalonate, succinate and CO2 were isolated and14C determined. Incorporation of U‐14C‐linoleate into methylmalonate in vitro was 20 times greater than from U‐14C‐palmitate. Rats fed 20% corn oil grew more slowly on B12 deficient than B12 sufficient diets. Biotin and vitamin B12 deficiencies were found to decrease the in vivo metabolism of linoleate. These data suggest that one pathway of linoleate oxidation has methylmalonate as an intermediate.

THE EFFECTS OF OSMOTIC LYSIS ON THE OXIDATIVE PHOSPHORYLATION AND COMPARTMENTATION OF RAT LIVER MITOCHONDRIA

Rat liver mitochondria isolated in 0.25 M sucrose were osmotically lysed with distilled water. The effect of osmotic lysis on mitochondrial compartmentation was monitored by following the changes in the specific Mg(++)-ATPase and the stimulation of this activity by DNP. Each resuspension in distilled water caused a progressive increase in the specific Mg(++)-ATPase and a decrease in DNP-stimulation. Lysed mitochondria yielded P:O ratios of slightly less than 1.0 when each of the "site-specific" substrates, NADH, D-beta-hydroxybutyrate, succinate, and ascorbate, were oxidized. These data indicate that only site 3 phosphorylation remained undiminished. The crude, lysed mitochondria were subfractionated by centrifugation on linear sucrose density gradients. Assays for protein, malate dehydrogenase, D-beta-hydroxybutyrate dehydrogenase, and succinate dehydrogenase indicated that the inner compartment could be clearly separated from the outer membrane vesicles. The results also suggested that the small vesicle fraction contained a small proportion of vesiculated inner membranes. Inner mitochondrial compartments, "contracted" by preincubation in the presence of ATP, sedimented to a markedly lower density on the gradients than did the unincubated preparations and about 50% of the ghosts showed a highly condensed morphology. In the contracted preparations, relatively low malate dehydrogenase and D-beta-hydroxybutyrate dehydrogenase activities were found in the fractions comprised of the inner compartments. The specific activity and distribution of succinate dehydrogenase were about the same as were found with the unincubated, lysed mitochondria.