LTER Site Research Articles

Exploring the mesoscale connectivity of phytoplankton periodic assemblages' succession in northern Adriatic pelagic habitats

An appropriate model for phytoplankton distribution patterns is critical for understanding biogeochemical cycles and trophic interactions in the oceans and seas. Because phytoplankton dynamics in coastal waters are more complex due to shallow depth and proximity to land, more accurate models applied to the correct spatial and temporal scales are needed. Our study investigates the role of the atmosphere and hydrosphere in pelagic habitat by modelling phytoplankton assemblages at two Long Term Ecological Research sites in the northern Adriatic Sea using niche-forming environmental variables (wind, temperature, salinity, river discharge, rain, and water column stratification). To study the synchronization between the phytoplankton community and these environmental variables at the two LTER sites, we applied current linear and nonlinear numerical methods for ecological modelling. The aim was to use periodic and/or non-periodic properties of the environmental variables to classify the phytoplankton assemblages at one LTER site (Gulf of Trieste - Slovenia) and then predict them at another LTER site 100 km away (Gulf of Venice - Italy). We found that periodicity played a role in the explanatory and predictive power of the environmental variables and that it was more important than non-periodic events in defining the common structure of the two pelagic habitats. The non-linear classification functions of the neural networks further increased the predictive power of these variables. We observed partial synchronization of communities at the mesoscale and differences between the original and predicted assemblages under similar environmental conditions. We conclude that mesoscale connectivity plays an important role in phytoplankton communities in the northern Adriatic. However, the loss of periodicity of niche-forming variables due to more frequent extreme meteorological and hydrological events could loosen these connections and affect the temporal succession of phytoplankton assemblages.

Distribution of Aquatic Macrophytes in the Littoral of Lake Bohinj (Slovenia)

In alpine Lake Bohinj, which is an LTER site and a part of the national park, the occurrence and depth distribution of submerged and emerged aquatic macrophytes were analyzed. Nine submerged and one emergent macrophyte taxa were found in the lake: Myriophyllum spicatum, Chara virgata, Chara aspera, Potamogeton lucens, Potamogeton alpinus, Potamogeton crispus, Potamogeton perfoliatus, Potamogeton pusillus, Ranunculus circinatus with the synonym Batrachium foeniculaceum and the emergent species Phragmites australis. The depth of the vegetation zones was measured using a depth meter and their coordinates were recorded using a GNSS antenna with RTK receiver. These data were used along with a DEM of lake depths to accurately map the potential zone of macrophyte growth, which was based on the depths of macrophyte distribution. The potential zone of macrophyte growth consisted of 28 different transects and covered 240.14 ha of the lake. The macrophytes covered 5.55 ha. The most common and abundant species was M. spicatum. A significant difference in macrophyte cover was found between the south and north shores of the lake, with the south shore having more patches with a larger total area. A clear difference in macrophyte cover was also noted between the main inflow and outflow of the lake. The presence of macrophytes and their diversity varied in different parts of the lake due to differences in slope, depth and type of substrates.

A CHEMTAX‐derived phytoplankton community structure during 12‐year observations in the Gulf of Naples (LTER‐MC)

AbstractThe rapid response of phytoplankton communities to environmental changes makes this compartment one of the most important biological variable to consider in dealing with ecology and trophodynamic of coastal areas, especially in relation with ongoing climate changes and increased human pressures. In the last 30 years, the use of chemotaxonomy has improved the capability to detect phytoplankton community composition in terms of chemofunctional groups, especially for small size species requiring specific expertise and techniques, as well as time‐consuming observation with light microscope. In this study, the temporal variability of chemotaxonomic functional groups has been investigated in surface waters of a LTER station in the Gulf of Naples over 12‐year weekly sampling activities (2003–2015). Data reveal increasing trends in the percentage contribution of diatoms, prasinophytes, cryptophytes to the total phytoplankton biomass, while other groups show a decreasing trend. Nevertheless, strong differences in the intervals of periodicity for each chemofunctional group have emerged, both in terms of timescale and strength of periodicity over time, implying that temporal dynamics of groups were not stationary over the time and that they have different relationships with environmental variability. Our results contribute to enrich scientific knowledge on the ecology of this LTER site and underline the importance of chemotaxonomy as a monitoring tool in coastal marine systems.

Benthic and Pelagic Contributions to Primary Production: Experimental Insights From the Gulf of Trieste (Northern Adriatic Sea)

Although the 14C-method remains one of the most sensitive measures of primary production in marine ecosystems, few data from coastal sublittoral areas are available. We applied an integrated approach to quantify the benthic (PPs) and pelagic (PPw) contributions to total primary production (PPt) in a 17-m deep coastal site. From March 2015 to March 2019, we carried out 16 in situ experiments on a seasonal basis, at the LTER site C1, whereas benthic rates were estimated in the laboratory. To relate PP to seawater physical features and to the water column stability, the Brunt-Väisälä frequency was calculated. We further related our PP rates to the abundance, biomass, main taxonomic groups and diversity of eukaryotic phytoplankton and microphytobenthos (MPB). In November 2018, the maximum PPw (6.71 ± 0.82 µgC L-1 h-1) was estimated at the surface layer, in correspondence to the highest value of dinoflagellates biomass (29.35 µgC L-1), on the account of small (<20 µm) naked and thecate forms. PPi, integrated over the water column, displayed the highest values in July 2017 and July 2018. In sediments, negative PPs values were estimated in late autumn/winter, when minima of MPB abundance occurred. The highest rates were displayed in January 2018 and October 2016 (28.50 and 17.55 mgC m-2 h-1), due to the presence of dominant diatoms Paralia sulcata and Nitzschia sigma var. sigmatella, respectively. The PPs contribution to PPt was negligible (<2%) in 6 out of 16 experiments, with a mean value of 11.3% (excluding negative PPs values) over the study period, while it reached up to 43% in January 2018. The principal component analyses revealed that nutrients availability affected the seasonal development of pelagic and benthic phototrophs and primary production more than the physical variables, except for the surface layer of the water column where temperature and salinity were the main drivers. Our results add on the limited database on primary production in sublittoral areas and represent one of the few attempts, on a global scale, of integrating pelagic and benthic primary production using the 14C method to quantify the overall ecosystem productivity.

Harmful Algal Blooms and their impacts on shellfish mariculture follow regionally distinct patterns of water circulation in the western English Channel during the 2018 heatwave

Harmful algal blooms (HABs) can have severe ecological, societal and economic impacts upon marine ecosystems, human health and the seafood industry. We evaluated changes in marine plankton communities with prevailing physico-chemical conditions throughout an exceptionally warm summer (2018), to elucidate key factors governing HABs and their impacts on shellfish mariculture in the western English Channel. Despite warm, stable weather conditions and widespread seasonal stratification throughout the summer, divergent plankton community compositions were observed at two rope-grown mussel (Mytilus edulis) farms (St Austell Bay and Lyme Bay) and a long-term ecological research LTER site (Plymouth L4). There were significant differences between sites in the abundances of HAB species, including Dinophysis spp. and Karenia mikimotoi, whose cell counts bloomed in excess of UK Food Standards Agency (FSA) advisory 'trigger' levels at Plymouth L4 and St Austell Bay, but not at the Lyme Bay site. The K. mikimotoi bloom occurred over two weeks in August and comprised up to 88% of the standing phytoplankton biomass in St Austell Bay. Dinophysis spp. also bloomed here from May to September, constituting up to 28% of phytoplankton biomass. This protracted bloom resulted in concentrations of Dinophysis toxins 1 & 2 and pectenotoxins and okadaic acid in shellfish, which closed shellfish harvesting operations on farms located in St Austell Bay, and other shellfish sites in the west of the western English Channel (but not in the east of the region). Inter-site differences in the abundances of these and other HAB species were associated with variations in water circulation and co-occurring phytoplankton and zooplankton communities. Furthermore, plankton monitoring data obtained from the L4 site over the past 3 decades showed HAB species (including Dinophysis spp.) with abundances commonly occurring above advisory trigger levels during warmer periods, such as that coinciding with our study. Under projected climate warming these blooms are likely to continue to be governed by regionally distinct patterns of water circulation, which need to be taken into account in marine spatial planning, when assessing the suitability of new shellfish mariculture sites.

Phytoplankton Time-Series in a LTER Site of the Adriatic Sea: Methodological Approach to Decipher Community Structure and Indicative Taxa

In the shallow and landlocked northeast Adriatic Sea, environmental factors have changed in recent decades. Their influence on seasonal and inter-annual variability of phytoplankton has been documented in the recent literature. Here, we decipher the long-term variability of phytoplankton phenology at a Long-Term Ecological Research site (Gulf of Trieste, Slovenia). Structural changes in the phytoplankton community (period 2005–2017) were analysed using a multivariate protocol based on Bayesian clustering. The protocol was modified from the literature to fit the needs of the study, using correspondence analysis and k-means clustering. A novel index for ordination and selection of taxa based on frequency and evenness was developed. The Total Inertia analysis showed that this index better preserved the available information. Typical seasonal assemblages were highlighted by applying the Indicative Value index in conjunction with likelihood ratio values. We obtained a rough picture of the seasonal separation of the diatom-dominated community from the mixed community and a refined picture of the phenology of the assemblages and bloom events. The spring diatom peak proved to be inconstant and short-lived, while the autumn bloom was generally long and diverse. As expected for nearshore environments, the average life span of the assemblages was found to be short-periodic (2–4 months). The second part of the year and the last part of the series were more prone to changes in terms of typical assemblages.

Improved freshwater macroinvertebrate detection from environmental DNA through minimized nontarget amplification

Environmental DNA (eDNA) metabarcoding is a new, promising, and non-invasive method to detect biodiversity in aquatic environments. So far, it has mainly been used to screen for fish and amphibian diversity and rarely to detect macroinvertebrates. Typically, DNA metabarcoding relies on PCR amplification of a fragment of the mitochondrial cytochrome c oxidase I (COI) gene with degenerate primers. In comparison to other genes like 16S, COI has a greater taxonomic resolution and availability of an extensive reference database. Benthic stream invertebrates are of critical importance for regulatory biomonitoring, but when using universal primers on eDNA isolated from water, the number of reads and OTUs is “watered down”. This means the target taxa, macroinvertebrates, are underrepresented in comparison to other nontarget taxa, e. g. algae, bacteria, and fungi. The aim of the project was to design an insect-specific primer, which minimizes nontarget amplification. Therefore, data from a time series of 15 months at the Kinzig (Hesse), a silica-rich low-mountain-range stream, which is part of the Rhine‑Main‑Observatory (LTER site) was generated using the universal primers BF2/BR2. With this data we identified the most abundant nontarget taxa and designed a new reverse primer (EPTDr2n) with 3’ ‐ specificity toward benthic invertebrate taxa. Primer specificity was validated in silico together with universal forward primer fwhF2 using available data from GenBank and BOLD. 20 eDNA samples from the Kinzig River and its tributaries were then used to test the new primer in situ together with primer fwhF2. The new primer combination showed a much higher amplification of benthic invertebrates, insects in particular, than two other universal primer pairs for both, number of target reads (fwhF2/EPTDr2n: 99.6% versus BF2/BR2: 25.89% and fwhF2/fwhR2n: 39.04%; Fig. 1) and number of target species (fwhF2/EPTDr2n: 305 versus BF2/BR2: 113 and fwhF2/fwhR2n: 185). Additionally, the number of benthic invertebrate species exceeded even the number of 153 species identified by expert taxonomists at nearby sites across two decades of sampling. While several taxa reported, like a few trichopteran genera, flatworms, and some crustaceans, were not found, the primer shows greatly improved results for eDNA metabarcoding of benthic invertebrates(Leese et al. 2021).

N immobilization treatment revisited: A retarded and temporary effect unfolded in old‐field restoration

AbstractAimThere is increasing recognition that plant–soil feedbacks drive species co‐existence; therefore the below‐ground compartment should be better considered in ecological restoration. Addition of carbon is a restoration measure that relies on indirect plant–soil relationships by immobilizing soil nitrogen in microbial biomass to manipulate competitive hierarchies between plant species. The aim of the present work was to evaluate the impact of six years of carbon amendment in old‐field restoration in the long term, 20 years after the first application.LocationOld‐fields and reference sand steppe on dry calcareous sandy soil in Fülöpháza, Kiskun LTER site (46°53′ N, 19°24′ E), Hungary, Pannonian biogeographic region, Europe.MethodsWe applied carbon amendment in the form of sucrose and sawdust on three abandoned agricultural fields between 1998 and 2003. Vegetation was surveyed in 1998–2006 and re‐sampled in 2008, 2010 and 2018 on permanent 2 m × 2 m coenological relevés for carbon‐amended, control and reference plots (n = 144). We used principal response curves (PRC) to describe vegetation development trajectories and linear mixed‐effects models to test changes in cover of vascular plants and cryptogams, nitrogen requirement groups and restoration species groups with time and treatment.ResultsCarbon amendment resulted in lower soil nitrogen availability, and lower cover of vascular plants and cryptogams compared to control, but these differences became visible only four to five years after the first application and disappeared three years after the cessation of treatment. Minor treatment effects on the cover of oligotrophic, mesotrophic and target species were found.ConclusionsCarbon amendment did not speed up the recovery of sand grasslands; however, the reduction of cover (vegetation and cryptogam) can be a window of opportunity for other species to colonize that can be used as a complement to other treatments. Long‐term monitoring is especially important in evaluating restoration interventions that focus on indirect above‐ground–below‐ground linkages.

Hidden soils and their carbon stocks at high-elevation in the European Alps (North-West Italy)

Alpine soils store large quantities of total organic carbon (TOC). Given their high sensitivity to climate change, they may release large amounts of CO2 in a warming climate scenario. Thus, it is important to know their C stocks in order to estimate its possible release. While C stocks of forest, dwarf shrub and alpine grassland soils are well documented, little is known about soils and C stocks in high-elevated periglacial environments dominated by frost-driven processes. The object of this study is the periglacial environment of the Stolenberg Plateau (LTER site Istituto Mosso, 3030 m a.s.l.), at the foot of the Monte Rosa Massif (NW Italian Alps). The plateau is mostly covered by a thick stony layer, organized in periglacial blockfields and blockstreams. The plant cover reaches only 3–5%. During the construction of a chair lift, open trenches revealed, unexpectedly, well-developed soils under the active periglacial stone cover. In particular, thick (30–65 cm) and dark TOC-rich A horizons were observed. Below these Umbric horizons, Cambic Bw ones were developed but discontinuous. Despite the lack of vegetation, C stocks were remarkably high (up to ~ 5 kg m−2), comparable to vegetated soils at lower elevation. Non-invasive geophysical methods revealed that these hidden soils were widespread on the plateau under the stony cover, with a mean thickness of around 50 cm. These TOC-rich soils, without vegetation and covered by periglacial landforms, represent a unique pedoenvironment suggesting new perspectives on the actual C-stocks at high-elevation sites, which are probably underestimated.

Can Vegetation Removal Successfully Restore Coastal Dune Biodiversity?

Coastal dune habitats have been declining globally over the last several decades due to rapid urbanization. Within remaining dune systems, dune fixation has resulted in further losses of mobile dunes with negative impacts on their associated species. Some studies suggest vegetation removal can initially promote habitat heterogeneity, and increase availability of suitable habitats for psammophile, xeric and endemic mobile dune species, but longer-term responses are generally unknown. We investigated the temporal trends of four taxonomic groups to determine the effect of vegetation removal on dune assemblages over a 12-year period at an LTER site. Three different forms of removal are investigated here—removal in a grid form on fixed dunes, removal of the wind-facing slope vegetation on semi-fixed dunes and opportunistic off-road driving on disturbed dunes. Results were varied across taxa, highlighting the need for multi-taxa monitoring in conservation and restoration management. Overall, fixed dune treatment had very little effect, while a stronger response was found in semi-fixed treatments in particular for mobile dune indicator species, which showed evidence of recolonization within a few years following treatment. Disturbed dunes were most similar to mobile dunes for animal taxa indicating that pulse removal may not be as effective as continuous press disturbance. Nevertheless, a less destructive form of disturbance such as re-introduction of grazing might be preferable and requires further investigation.

Abiotic Parameters and Pedogenesis as Controlling Factors for Soil C and N Cycling Along an Elevational Gradient in a Subalpine Larch Forest (NW Italy)

Mountain regions are vulnerable to climate change but information about the climate sensitivity of seasonally snow-covered, subalpine ecosystems is still lacking. We investigated the impact of climatic conditions and pedogenesis on the C and N cycling along an elevation gradient under a Larch forest in the northwest (NW) Italian Alps. The environmental gradient that occurs over short distances makes elevation a good proxy for understanding the response of forest soils and nutrient cycling to different climatic conditions. Subalpine forests are located in a sensitive elevation range—the prospected changes in winter precipitation (i.e., shift of snowfalls to higher altitude, reduction of snow cover duration, etc.) could determine strong effects on soil nitrogen and carbon cycling. The work was performed in the western Italian Alps (Long-Term Ecological Research- LTER site Mont Mars, Fontainemore, Aosta Valley Region). Three sites, characterized by similar bedrock lithology and predominance of Larix decidua Mill., were selected along an elevation gradient (1550–1900 m above sea level-a.s.l.). To investigate the effects on soil properties and soil solution C and N forms of changing abiotic factors (e.g., snow cover duration, number of soil freeze/thaw cycles, intensity and duration of soil freezing, etc.) along the elevation gradient, soil profiles were opened in each site and topsoils and soil solutions were periodically collected from 2015 to 2016. The results indicated that the coldest and highest soil (well-developed Podzol) showed the highest content of extractable C and N forms (N-NH4+, DON, DOC, Cmicr) compared to lower-elevation Cambisols. The soil solution C and N forms (except N-NO3−) did not show significant differences among the sites. Independently from elevation, the duration of soil freezing, soil volumetric water content, and snow cover duration (in order of importance) were the main abiotic factors driving soil C and N forms, revealing how little changes in these parameters could considerably influence C and N cycling under this subalpine forest stand.

Influence of permafrost, rock and ice glaciers on chemistry of high-elevation ponds (NW Italian Alps)

Permafrost degradation, rock-glacier thawing, and glacier retreat are influencing surface water quality at high elevations. However, there is a lack of knowledge on the dominant geochemical reactions occurring in different cryospheric conditions and how these reactions change during the ice-free season. In the Col d'Olen area (LTER site, NW Italian Alps), four ponds with similar sizes, located in basins with different cryospheric features (glacier, permafrost, rock glacier, none of these), are present in a geographically limited area. All ponds were sampled weekly in 2015 and partially in 2014. Major ions, selected trace elements, and biotic parameters (dissolved organic carbon-DOC, fluorescence index-FI, and nitrate) are examined to evidence the effect of different cryospheric features on water characteristics. Where cryospheric conditions occur chemical weathering is more intensive, with strong seasonal increase of major ions. Sulphide oxidation dominates in glacier and permafrost lying on acid rocks, probably driven by enhanced weathering of freshly exposed rocks in subglacial environment and recently deglaciated areas, and active layer thickness increase. Differently, carbonation dominates for the rock glacier lying on ultramafic rocks. There, high Ni concentrations originate from dissolution of Mg-bearing rocks in the landform. In all settings, pH neutralisation occurs because of the presence of secondary carbonate lithology and ultramafic rocks. Nitrate highest concentrations and changes occur in cryospheric settings while DOC and FI do not show strong differences and seasonal variations. The establishment of more frequent monitoring for water quality in high-elevated surface waters is necessary to provide greater statistical power to detect changes on longer time scales.

Dynamic of nitrogen and dissolved organic carbon in an alpine forested catchment: atmospheric deposition and soil solution trends

A number of studies have reported decreasing trends of acidifying and N deposition inputs to forest areas throughout Europe and the USA in recent decades. There is a need to assess the responses of the ecosystem to declining atmospheric pollution by monitoring the variations of chemical species in the various compartments of the forest ecosystem on a long temporal scale. In this study, we report on patterns and trends in throughfall deposition concentrations of inorganic N, dissolved organic N (DON) and C (DOC) over a 20-year (1995–2015) period in the LTER site -Val Masino (1190 m a.s.l.), a spruce forest, in the Central Italian Alps. The same chemical species were studied in the litter floor leachates and mineral soil solution, at three different depths (15, 40 and 70 cm), over a 10-year period (2005–2015). Inorganic N concentration was drastically reduced as throughfall and litter floor leachates percolated through the topsoil, where the measured mean values (2 µeq L-1) were much lower than the critical limits established for coniferous stands (14 µeq L-1). The seasonal temperature dependence of throughfall DOC and DON concentration suggests that the microbial community living on the needles was the main source of dissolved organic matter. Most of DOC and DON infiltrating from the litter floor were retained in the mineral soil. The rainfall amount was the only climatic factor exerting a control on DOC and N compounds in throughfall and forest floor leachates over a decadal period. Concentration of SO4 and NO3 declined by 50% and 26% respectively in throughfall deposition. Trends of NO3 and SO4 in forest floor leachates and mineral soil solution mirrored declining depositions. No trends in both DON and DOC concentration and in DOC/DON ratio in soil solutions were observed. These outcomes suggest that the declining NO3 and SO4 atmospheric inputs did not influence the dynamic of DON and DOC in the Val Masino forest. The results of this study are particularly relevant, as they are based on a comprehensive survey of all the main compartments of the forest ecosystem. Moreover, this kind of long-term research has rarely been carried out in the Alpine region.

Thirty years of ecological research at the Gran Sasso d’Italia LTER site: climate change in action

Since 1986, vegetation monitoring of alpine plant communities has been performed at the Gran Sasso d’Italia LTER site (https://deims.org/c0738b00-854c-418f-8d4f-69b03486e9fd) in the Central Apennines, through phytosociological relevés and abundance and coverage estimation of the vascular flora at fine scale. The monitoring activities for abiotic parameters regard air and soil temperatures, rainfall, snowfall and snow cover persistence. A comparative analysis of changes in species composition, life forms, life strategies and morpho-functional types allowed recognition of dynamical processes (fluctuation and degeneration) and an increase in stress- and drought-tolerant and ruderal species, probably linked to a general process of climate change. A trend of variation forced by increasing drought was recorded in high-mountain plant communities, normally within a dynamic fluctuation process. There has been a 50–80% change in species composition with respect to the total number of species observed over the years. Whereas the total number of species has increased in all communities, in high-mountain mesic grassland 20% of sensitive species have completely disappeared. Early signs of a degeneration process were already discernible after seven years: such signs are more evident in snow-dependent communities, with a quantitative increase in more thermophilic and drought-tolerant species and a parallel decrease in more mesic, cryophilic and competitive species. In particular, the following phenomena have been recorded in high-mountain mesic grassland, in agreement with predicted or observed phenomena in other Alpine or Arctic areas: (a) coverage increase (or appearance) of ruderal and stress- and drought-tolerant species; (b) coverage decrease (or disappearance) of cryophilic, mesic and competitive species. These short-term changes could lead, in the medium- or long-term, to a disgregation process affecting the high elevation plant communities of the Apennines (including the local extinction of most of the cold-adapted species), due to their very low resilience. The phenomena described may be linked to the observed climate change which occurred during the last century (in particular in the last 50 years) in the Apennines, consisting mainly, in the mountains, of a strong reduction in the duration of snow-cover and an increase in mean and minimum annual temperatures.

Feeding Essential Biodiversity Variables (EBVs): actual and potential contributions from LTER-Italy

The conceptual framework of Essential Biodiversity Variables (EBVs) aims to capture the major dimensions of biodiversity change by structuring biodiversity monitoring and by ruling data collection amongst different providers. Amongst the research infrastructures adopting and implementing the EBV framework, LTER-Europe - the European node of ILTER (International Long-Term Ecological Research) - follows the approach to compare site-based biodiversity observations within and across its networks. However, a synoptic overview of their contributions with EBVs-relevant data is still missing, since data are not made available for several reasons. In this paper, we assess the capacity of LTER-Italy, one of the richest and heterogeneous networks of LTER sites in Europe, to provide data to “Species Distribution” and “Species Abundance” EBVs without inspecting and downloading their contents. To this aim, we mine the EBVs information which is publicly structured and shared by LTER site managers through DEIMS-SDR, the LTER-Europe online metadata repository. We classify the sites according to two types of contributions: (i) the actual contribution, based on metadata of datasets and (ii) the potential contribution, based on metadata of sites. Through these assessments, we investigate if LTER-Italy monitoring activities can provide EBVs measures and which sites currently provide datasets. By comparing the two contributions, we pinpoint the factors hampering the accessibility of LTER-Italy data and suggest solutions to increase the discoverability and reusability of LTER-Italy EBVs measurements. The research provides the first overview of EBVs monitored in LTER-Italy and the corresponding data management practices, as well as an evaluation of the interoperability of this network with respect to other research organisations for legal and technical aspects.

Time series and beyond: multifaceted plankton research at a marine Mediterranean LTER site

Plankton are a pivotal component of the diversity and functioning of coastal marine ecosystems. A long time-series of observations is the best tool to trace their patterns and variability over multiple scales, ultimately providing a sound foundation for assessing, modelling and predicting the effects of anthropogenic and natural environmental changes on pelagic communities. At the same time, a long time-series constitutes a formidable asset for different kinds of research on specific questions that emerge from the observations, whereby the results of these complementary studies provide precious interpretative tools that augment the informative value of the data collected. In this paper, we review more than 140 studies that have been developed around a Mediterranean plankton time series gathered in the Gulf of Naples at the station LTER-MC since 1984. These studies have addressed different topics concerning marine plankton, which have included: i) seasonal patterns and trends; ii) taxonomic diversity, with a focus on key or harmful algal species and the discovery of many new taxa; iii) molecular diversity of selected species, groups of species or the whole planktonic community; iv) life cycles of several phyto- and zooplankton species; and v) interactions among species through trophic relationships, parasites and viruses. Overall, the products of this research demonstrate the great value of time series besides the record of fluctuations and trends, and highlight their primary role in the development of the scientific knowledge of plankton much beyond the local scale.

Climatic and pedoclimatic factors driving C and N dynamics in soil and surface water in the alpine tundra (NW-Italian Alps)

In alpine tundra the interannual and seasonal variability of C and N forms in soil and lake water during the short snow-free season could be significant and related to climatic and pedoclimatic variables. The hypothesis that not only the climatic and pedoclimatic parameters recorded during the summer season but also the ones measured during the previous snow-covered season could contribute to explaining the C and N dynamics in soil and surface water was tested along 10 snow-free seasons in 3 sites in the alpine tundra in the north-western Italian Alps (LTER site Istituto Mosso). Among the considered parameters, the snow cover duration (SCD) exerted a primary control on soil N-NH4+, DOC, Cmicr, Nmicr and DOC:DON ratio, with an inverse relationship. A long SCD might cause the consumption of all the subnival substrata by the soil microorganisms, determining a C starvation during the subsequent snow-free season. An opposite trend was observed for the lake water, where a longer SCD corresponded to a higher content of inorganic N forms. Among the pedoclimatic indices, the number of soil freeze/thaw cycles (FTC) recorded during the snow-covered season had a positive relation with most of soil C and N forms and N-NO3− in lake water. Only the soil DON showed an inverse pattern, and this result is consistent with the hypothesis that FTC released soil DON, subsequently decomposed and mineralized. Only N-NO3− had a significant intraseasonal variability, reaching the highest values in September both in soil and water, revealing a significant slowdown of the contribution of soil N immobilization processes.

Development of the DayCent-Photo model and integration of variable photosynthetic capacity

We integrated a photosynthetic sub-model into the daily Century model (DayCent) to improve the estimations of seasonal changes in carbon fluxes at the Niwot Ridge LTER site and the Harvard forest LTER site (DayCent-Photo). The photosynthetic sub-model, adapted from the SIPNET/PnET family of models, includes solar radiation and vapor pressure deficit controls on production, as well as temperature and water stress terms. A key feature we added to the base photosynthetic equations is the addition of a variable maximum net photosynthetic rate (Amax). We optimized the parameters controlling photosynthesis using a variation of the Metropolis-Hastings algorithm along with data-assimilation techniques. The model was optimized and validated against observed net ecosystem exchange (NEE) and estimated gross primary production (GPP) and ecosystem respiration (RESP) values for AmeriFlux sites at Niwot Ridge and Harvard forest. The inclusion of a variable Amax rate greatly improved model performance (NEE RMSE = 0.63 gC·m–2, AIC = 2099) versus a version with a single Amax parameter (NEE RMSE = 0.74 gC·m–2, AIC = 3724). DayCent-Photo was able to capture the inter-annual and seasonal flux patterns for NEE, GPP, ecosystem respiration (RESP), and daily actual evapotranspiration (AET), but tended to overestimate yearly NEE uptake. The DayCent-Photo model has been successfully set up to simulate daily NEE, GPP, RESP, and AET for deciduous forest, conifer forests, and grassland systems in the US using AmeriFlux data sets and has recently been improved to include the impact of UV radiation surface litter decay (DayCent-UV). The simulated influence of a variable Amax rate suggests a need for further studies on the process controls affecting the seasonal photosynthetic rates. The results for all of the forest and grassland sites show that maximum Amax values occurs early during the growing period and taper off toward the end of the growing season.

Seasonal Patterns of Dry Deposition at a High‐Elevation Site in the Colorado Rocky Mountains

AbstractIn the Colorado Rocky Mountains, high‐elevation barren soils are deficient in carbon (C) and phosphorus (P) and enriched in nitrogen (N). The seasonal variability of dry deposition and its contributions to alpine elemental budgets is critical to understanding how dry deposition influences biogeochemical cycling in high‐elevation environments. In this 2 year study, we evaluated dry and wet deposition inputs to the Niwot Ridge Long Term Ecological Research (NWT LTER) site in the Colorado Rocky Mountains. The total organic C flux in wet + dry (including soluble and particulate C) deposition was >30 kg C ha−1 yr−1 and represents a substantial input for this C‐limited environment. Our side‐by‐side comparison of dry deposition collectors with and without marble insert indicated that the insert improved retention of dry deposition by ~28%. Annual average dry deposition fluxes of water‐soluble organic carbon (4.25 kg C ha−1 yr−1) and other water‐soluble constituents, including ammonium (0.16 kg NH4+ha−1 yr−1), nitrate (1.99 kg NO3− ha−1 yr−1), phosphate (0.08 kg PO43− ha−1 yr−1), and sulfate (1.20 kg SO42− ha−1 yr−1), were comparable to those in wet deposition, with highest values measured in the summer. Backward trajectory analyses implicate air masses passing through the arid west and Four Corners, USA, as dominant source areas for dry deposition, especially in spring months. Synchronous temporal patterns of deposition observed at the NWT LTER site and a distant Rocky Mountain National Park Clean Air Status and Trends Network site indicate that seasonal dry deposition patterns are regional phenomena with important implications for the larger Rocky Mountain region.

Grazing and temporal turnover in herbaceous communities in a Mediterranean landscape

AbstractQuestionWhat are the direct and indirect effects of cattle grazing on temporal turnover in Mediterranean herbaceous communities, and are there differences between species (taxonomic) and functional turnover rates? Are turnover rates related to changes in precipitation patterns?LocationThe long term ecological research (LTER) station, Ramat Hanadiv Nature Park, Israel.MethodsWe used data from a Mediterranean LTER site to analyse temporal turnover in herbaceous communities under cattle grazing and control conditions, while accounting for the potential effects of precipitation and woody cover. We analysed two types of temporal turnover: taxonomic turnover (changes in species composition) and turnover in functional traits (changes in the relative abundance of species with different functional traits).ResultsWe found that communities exhibited rapid taxonomic turnover between sampling years, which was mostly explained by changes in precipitation patterns. Furthermore, there was a strong and consistent directional trend in taxonomic turnover (21% per decade) throughout the study period, which was correlated with a long‐term trend of decreasing precipitation. This trend, however, was not significantly explained by grazing, woody cover change or their interaction. Grazing did have a significant effect on short‐term turnover rates, but its effects varied in both direction and magnitude among sites located in different habitats. Temporal turnover in functional traits was much slower than taxonomic turnover, and was also inconsistent among traits and sites. Grazing reduced the bi‐annual turnover rates in the composition of different life forms, and reduced the decadal turnover rate in the composition of different height groups in the community.ConclusionsThe results of this analysis suggest that the effect of cattle grazing on the temporal dynamics of herbaceous communities in Mediterranean ecosystems is habitat‐ and trait‐specific, and unrelated to changes in woody cover. In contrast, inter‐annual changes in precipitation patterns have a much stronger effect on turnover rates. The relationship between temporal species turnover and precipitation in these communities is therefore in line with modern co‐existence theory, by which fluctuating environmental conditions facilitate long‐term species co‐existence.