This study shows that the Mond Estuary, Persian Gulf experiences notable time-dependent longitudinal salinity variations. Monthly-seasonal variability in salinity changes from a positive estuarine system in wintertime to inverse and salt-plug estuaries during summertime. A highly unsteady state (time scale of hours-days) occurs in the wintertime named the freshwater lens estuary (FLE), in which a low-salinity water mass (lens) is confined by both marine and riverine saltwater sources. Here, FLE dynamics is investigated using realistic and idealized numerical models and two 25-hour data sets collected immediately before a hypersaline runoff (weak FLE condition) and during another one (strong FLE condition). The Péclet Number (Pe) reveals a much stronger advective transports than diffusive one (Pe>5.7) throughout the estuary. An exception from this behavior (stronger mixing with Pe=0.8) is observed at the estuary downstream, where a significant amount of freshwater mixes with seawater during the weak FLE conditions. Also, the minimum hypersaline runoff of ∼400 m3/s estimated by the numerical model can dampen tidal waves at the head of the estuary. In an idealized basin, the model shows that FLE longitudinal flows form two cells of positive estuarine circulation separated by a maximum mixing zone (the potential energy anomaly <0.75 J/m3). In the Mond Estuary, a sea-level rise of 20 cm increases salinity in the FLE state and the positive estuary during winter. Conversely, it decreases salinity in the inverse and salt-plug estuaries in summer.