Peroxynitrite (ONOO−) is an important reactive oxygen species, and excess ONOO− in the body can lead to a range of diseases. Addressing the need for sensitive detection ONOO−, in this work, a highly sensitivity and selectivity long-wavelength fluorescent probe (named CIS) was designed for tracking ONOO− in biological cells. Probe CIS featured carbazole as the fluorophore and the CC double bond with two electron withdrawing –CN groups as the recognition site. The probe CIS exhibited the typical aggregation-induced emission (AIE) and intramolecular charge transfer (ICT) characteristics with the bright red fluorescent emission in high water fraction (fw ≥ 50 %) and negligible emission in low water fraction. The fluorescence emission wavelength of probe CIS is 631 nm, with a large Stokes shift (151 nm), which can sensitively detect ONOO− in DMSO: H2O (7:3, v/v) environment. Notably, the probe CIS exhibited a wide pH detection range (pH = 3–10), a low detection limit of 36.66 nM, high selectivity and minimal interference. Furthermore, probe CIS demonstrated excellent biocompatibility and low cytotoxicity, and can be used for the detection of exogenous ONOO− in 4T1 cells (Mouse breast cancer cells). These research results indicate that probe CIS has potential application prospects in the biological aspects.