We show that the formation of active matter structures requires them to modify their surroundings by creating inhomogeneities such as concentration gradients and fluid flow around the structure constituents. This modification is crucial for the stability of the ordered structures. We examine the formation of catalytic Janus particle aggregates at low volumetric fractions in the presence of hydrodynamic interactions (HIs). Our study shows the types of structures formed for various values of the kinetic constant of the catalytic reaction. The presence of HI causes the aggregate particles to have higher mobility than in the case of the absence of such interactions, which is reflected in the behavior of the pair distribution function. Although HI decreases energy conversion efficiency, they play a significant role in the formation of complex structures found in nature. Self-organization of these structures is driven by direct feedback loops between structure formation and the surrounding medium. As the structures alter the medium by consuming substrate and perturbing fluid flow, the substrate concentration, in turn, dictates the kinetics and configuration of the structures.
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