Efficient nitrogen (N) management is crucial for maximizing the growth of young blueberry plants (Vaccinium corymbosum). This study evaluates the effects of the N fertilization form (ammonium, NH4+; nitrate, or NO3−) and application timing on the blueberries’ establishment, N and Ca absorption, and N distribution. The experiment was conducted in the southern hemisphere, in Chile, from October 2023 to January 2024. Six-month-old blueberry cv. Blue Ribbon plants were cultivated in pots. NH4+ and NO3− were used as full or split-dose applications using the 15N isotopic dilution technique. Plant leaves, stems, root growth, and biomass, as well as their N and Ca contents, were measured. Our results showed that 90 days after nitrogen application, blueberry plants obtained the lowest biomass in their leaves, stems, and roots when NO3− was applied in T1 or T1T2. The same pattern was observed for N and Ca contents, hence for N recovery. During the first period (T1) of application, heavy rain (100 mm) was registered over the course of a few days and caused leaching. Therefore, applying nitrate to young blueberry plants cultivated in areas with spring rainfall and low temperatures would not be recommended because the leaching losses and lower growth conditions, such as low temperatures and high precipitation, led to reduced transpiration, resulting in lower calcium and nitrogen contents. These confirm that N fertilization management (form and timing) can ensure a better establishment for young blueberry plants, optimizing their growth and sustainable production by minimizing nitrogen losses.