Longnose Skate Research Articles

A tale of two species: Disaggregating mixed historical catches of two most common skates in the Northeast Pacific Ocean

Historical catch data represent a key source of information for fisheries stock assessment models. Historically, commercial fishery catch statistics were estimated from the portion of catch landed in ports. However, many species with relatively low economic value have not been recorded on a species basis but instead as a part of an aggregate category. Reconstructing component species catch from an aggregate category is a common challenge for fisheries stock assessment efforts around the world. Skates are one group of species with low economic value for which landed catch has not been commonly reported by species. In this paper, we present a novel approach to disaggregate the historical catch of the two most abundant skate species on the West Coast of the United States, longnose skate (Caliraja rhina) and big skate (Beringraja binoculata), landed within the aggregated skate category, in ports of Washington State. We used a combination of fishery-dependent and fishery-independent data sources to account for changes in the spatial extent of the fishery over time, and differences in the depth distribution of these two skate species. While developed to disentangle aggregate catch of longnose and big skates, the approach is not limited to skates on the West Coast of the United States, but can be adapted for any species which landings have been reported within an aggregated category elsewhere.

A Faunistic Revision of Longnose Skates of the Genus Dipturus (Rajiformes: Rajidae) from the Southern Southwestern Atlantic Ocean, Based on Morphological and Molecular Evidence

The identity of longnose skates (Dipturus-Zearaja-like skates) in the southern cone of the Americas has been a topic of extensive debate. This study employs a comprehensive analysis encompassing morphometrics, claspers, and the examination of COI and NADH2 sequence data to conclusively demonstrate the existence of only two longnose skate species in the southwestern Atlantic Ocean, extending south of 35 °S. Notably, Dipturus argentinensis Díaz de Astarloa, Mabragaña, Hanner and Figueroa, 2008 is revealed as a junior synonym of D. trachyderma (Krefft and Stehmann, 1975). Dipturus leptocaudus (Krefft and Stehmann, 1975) remains a northern valid species, but the specimen from the Falkland Islands (Malvinas) is recognized as a misidentification of D. trachyderma. Zearaja flavirostris (Philippi, 1892) and Dipturus lamillai Concha, Caira, Ebert and Pompert, 2019 are confirmed as junior synonyms of Zearaja brevicaudata (Marini, 1933). These findings contradict the previous report of six species within the same region over the last decade and underscore the presence of D. trachyderma and Z. brevicaudata south of 35 °S in the southwestern Atlantic. Additionally, this study notes the occurrence of only one specimen of Z. chilensis (Guichenot, 1848) in the Falkland Islands (Malvinas), suggesting an unusual frequency of this eastern Pacific skate in the southern Southwest Atlantic. Given that clasper morphology serves as the key distinguishing trait between Dipturus and Zearaja species, we provided a detailed analysis of the clasper characteristics of the Atlantic D. trachyderma, unequivocally situating it within Dipturus. The diagnostic characteristics include: (i) the presence of cartilage with the distal portion referred to as the sentinel, a feature absent in Zearaja; (ii) longer ventral terminal cartilage with the distal end referred to as the funnel, compared to Zearaja; and (iii) a non-spatulate distal lobe, a distinctive trait specific to Dipturus.

The complete mitochondrial genomes of the flapper skate Dipturus intermedius and the longnose skate Dipturus oxyrinchus

We describe the complete mitochondrial genomes of the flapper skate Dipturus intermedius (Parnell 1837) and the longnose skate Dipturus oxyrinchus (Linnaeus 1758), which have been obtained by Sanger sequencing. We report the length of the sequences to be 16,906 and 16,911 bp, respectively. The length and structure of gene regions, containing 13 protein-coding regions, 22 tRNA genes, two rRNA genes, and two non-coding areas, resemble those of related skate species. Despite D. intermedius being considered a cryptic species with D. batis, the full mitogenomes confirm that D. intermedius and D. oxyrinchus are more genetically similar. In comparison to other Dipturus species, D. intermedius is missing a whole codon in its cytochrome oxidase subunit 2 gene. These mitogenomes will be a useful resource furthering investigation of the population genetic differences and evolutionary history of skate species.

Morphological and Molecular Evidence Reveals the Longnose Skate Zearaja brevicaudata (Marini, 1933) to be a Senior Synonym of Dipturus lamillai Concha, Caira, Ebert & Pompert 2019.

Longnose skates have great economic importance in South American fisheries, and in order to preserve them, it is important to have a well-defined taxonomic status of their species. Dipturus lamillai was recently described for Malvinas Islands waters based on morphological and molecular comparisons with Zearaja chilensis. Although D. lamillai has been compared with several congeneric species, it was not properly compared with the morphologically similar Zearaja brevicaudata, the most abundant longnose skate in the Southwest Atlantic. Here, these species were compared by morphological and molecular analyses in order to evaluate their conspecificity. Linear morphometric variables of holotype and paratypes of D. lamillai and 69 specimens of Z. brevicaudata were compared and investigated using Principal Component Analysis. In addition, thorn patterns, denticle distributions, color, and clasper morphology were compared. No body proportions or other single character that could differentiate D. lamillai from Z. brevicaudata were found. Molecular analyses comprised of the comparison of the Cytochrome oxidase subunit I (COI) and the NADH dehydrogenase subunit 2. The results of the Maximum Likelihood (ML) carried out for each molecular marker showed that sequences from D. lamillai clustered together with those of Z. brevicaudata, and the molecular distance determined by Kimura two-parameter were lower than the expected for different species. Additionally, the Automatic Barcode Gap Discovery method and the Bayesian implementation of the Poisson tree processes were carried out with COI sequences to explore species limits, and their results were consistent with ML analyses. In summary, the results obtained showed that there are no morphological or molecular differences between these nominal species of the valid skate genus Zearaja, leading to the conclusion that they are conspecific. Therefore, we designated Z. brevicaudata as a senior synonym of D. lamillai.

Rapid age estimation of longnose skate (

There is a paucity of age data for chondrichthyan fishes owing, in large part, to limitations in traditional age estimation methods. Fourier transform near-infrared (FT-NIR) spectroscopy has shown promise as an alternative, more efficient method for acquiring age data from chondrichthyans. However, studies are limited to sharks in the southern hemisphere. We explored FT-NIR spectroscopy to predict age for a batoid species in the northern hemisphere. The longnose skate (Raja rhina) is one of a small number of batoids for which annual band periodicity in vertebral centra has been validated, allowing for traditional age estimation and making it an ideal candidate for this study. We fit a multivariate partial least-square predictive model between FT-NIR spectra collected from vertebral centra and traditional age estimates, and tested model predictive skill by using external validation. Using FT-NIR spectroscopy, we were able to predict age for longnose skates between the ages of 1 and 14 years with precision and bias near equal to those of traditional methods in less than a quarter of the time. These results support potential for FT-NIR spectroscopy to increase the amount of age data available for assessments used to inform the conservation and management of this sensitive group of species.

Right on target: using data from targeted stocks to reconstruct removals of bycatch species, a case study of longnose skate from Northeast Pacific Ocean

Fisheries stock assessments rely heavily on historical catch information to understand how a stock responds to exploitation and make meaningful forecasts under alternative management and environmental scenarios. However, for many bycatch species historical removals are virtually unknown, as a large portion of the catch was discarded at sea. For example, historical discard of elasmobranch species such as skates and sharks have been reported as 95 percent of the total catch based on available data. The longnose skate is one the most abundant groundfishes on the continental slope of the U.S. Pacific Coast by biomass, and the most abundant skate species in the Northeast Pacific Ocean. We developed a method to estimate catch of longnose skate on the U.S. West Coast based on the catch of Dover sole, a co-occurring targeted species with which longnose skate is caught. This method allowed us to reconstruct historical longnose skate catches back to the beginning of the bottom trawl fisheries and improve stock assessment for this species. We also examined the impact of using our method versus other common methods of catch reconstruction to inform stock assessment models, and found that the target-based predictive method produced results that more accurately reflected the life history and typical stock dynamics of elasmobranch taxa. Our method is not limited to the specific case of longnose skate and could be easily adapted for other species and areas.

Bomb radiocarbon analyses validate and inform age determination of longnose skate (Raja rhina) and big skate (Beringraja binoculata) in the north Pacific Ocean

Age and growth estimates based on growth band counts of sectioned vertebrae have been produced for longnose skate (Raja rhina) and big skate (Beringraja binoculata [formerly Raja binoculata]) populations in the Gulf of Alaska, British Columbia and California. Previous growth studies involving estimates from different laboratories in the USA (Alaska Fisheries Science Center, AFSC; Pacific Shark Research Center, PSRC at Moss Landing Marine Laboratories) and Canada (Fisheries and Oceans Canada, DFO) have produced dissimilar results for either species, highlighting the need for development of a consistent age determination protocol and more importantly an age validation study. Archived large specimens of longnose skate and big skate collected in Monterey Bay, CA, in 1980 and 1981 had minimum preliminary age estimates from vertebral growth band counts old enough to suggest that radiocarbon (14C) signals from bomb testing conducted in the late-1960s could be used to establish dates of growth band formation. To this end, we micro-milled skate vertebral thin sections, measured Δ14C using mass spectrometry, and estimated year of growth band formation based on the estimated age from growth band counts using both unstained and stained preparation methods Non-linear random effects modeling, implemented in a Markov Chain Monte Carlo (MCMC) simulation, was used to compare the skate Δ14C data set to a marine teleost otolith reference chronology for the California Current System. Results showed Δ14C measurements for big skate were non-informative as none of the archived samples were old enough for comparison to the reference curve, hence validation of the age estimation approach was not possible. However, for longnose skate, Δ14C data were more informative to fit pulse function models and compare results to the reference chronology. Modeling results indicated longnose skate age estimates based on unstained vertebral thin sections were less biased (overestimated to a smaller degree) than estimates based on stained vertebral thin sections. The degree of bias depended on agency ageing criteria, with the least biased age estimates produced by age readers from the AFSC. The AFSC age estimates had about a 70% probability that age estimates of longnose skate was within+/− 2 years of the expected age based on the radiocarbon assays. We were able to validate the age estimation methodology for longnose skate and establish criteria for growth band counts, which should now be useful to generate region-specific accurate growth and life history parameters required for more reliable stock assessment approaches.

Dietary variability in two common Alaskan skates (Bathyraja interrupta and Raja rhina)

Determining trophic relationships within and among species can provide insight into the structure and function of an ecosystem, and can inform the development of multi-species monitoring and management plans. The goal of this study was to address the need for dietary and trophic information of two common and abundant skates in Prince William Sound (PWS), the Bering skate, Bathyraja interrupta, and longnose skate, Raja rhina. Based on identification and analysis of stomach content data, both species were found to be generalist predators with diets dominated by crustaceans and supplemented with teleosts. The primary source of dietary variability for each species was total length, with spatial variables (i.e., latitude, longitude, and depth) also explaining a large portion of total dietary variability in the Bering skate. However, only a small proportion of the total intraspecific dietary variation was accounted for among the analyzed variables, suggesting substantial individual-based differences in the feeding habits of each species. Trophic level estimates indicated that the Bering skate and longnose skates <100 cm total length (TL) were secondary consumers, whereas longnose skates ≥100 cm TL were more piscivorous, tertiary consumers. Significant interspecific dietary differences were also evident, suggesting trophic separation, likely as a function of skate size. Given their abundance and generalistic feeding behavior, PWS skates can provide a means of monitoring demersal community health; information about their foraging ecology will be valuable in gaining a better understanding of trophodynamics within the PWS food web.

Structure and mechanical implications of the pectoral fin skeleton in the Longnose Skate (Chondrichthyes, Batoidea).

Batoid fishes have very light cartilaginous skeletons that facilitate their elegant swimming by applying their enlarged wing-like pectoral fins. Previous studies have shown structural features and mechanical properties of the mineralized cartilage skeleton in various batoid fishes. However, the details of the pectoral fin structure at different length scales, as well as the relationship between the mechanical properties and structural design remains unknown. The present work illustrates the hierarchical structure of the pectoral fin of the Longnose Skate (a representative batoid fish) and verifies the materials configuration and structural design increases the stiffness of fin skeleton without a loss in flexibility. These results have implications for the design of strong but flexible materials and bio-inspired autonomous underwater vehicles (AUVs).

Nutritional content, mercury, and trace element analyses of two skate (Rajidae) species in the Gulf of Alaska

Seafood is recognized as an important source of proteins and long chain omega-3 fatty acids. However, one of the primary concerns with seafood consumption is the level of heavy metals, particularly mercury, present in fish tissues, which may influence the demand of certain fishery products. We sampled muscle and liver tissues from 20 big (Beringraja binoculata) and 20 longnose (Raja rhina) skates collected near Kodiak and Cordova, Alaska, and analyzed their nutritional content (protein, moisture and lipid content and fatty acid profiles), heavy metal (mercury, arsenic, cadmium, lead) and trace element (selenium) load. Big and longnose skate muscle was composed of lean protein (14.7%±0.7% SD) with 1.2% (±0.4%) lipids and 83% (±0.8%) moisture. Skate livers were very high in lipids, between 52.5 and 57.5% and had high percentages of omega-3 fatty acids (30.2%). Mercury in these skates had mean levels of 0.21mg/kg, lower than average levels found in Pacific halibut (Hippoglossus stenolepis). Overall, the risk/benefit ratio of consuming skate muscle was slightly positive (3.62%) based on the balance of mercury toxicity and omega-3 fatty acid benefits. Big skates were overall more beneficial to consume, and only longnose skates from Cordova had a negative risk/benefit ratio. These data can be used by the fishing industry to understand current and future market demands for skate products, and to be aware of any health concerns of consuming Gulf of Alaska skates.

Impact of light on catch rate of four demersal fish species during the 2009–2010 U.S. west coast groundfish bottom trawl survey

To determine the influence of light on catch of demersal fish, we examined the relationship between near-bottom light levels, catch rates, and catch probability for four abundant groundfish species well represented in annual bottom trawl surveys on the U.S. west coast: arrowtooth flounder (Atheresthes stomias), greenstriped rockfish (Sebastes elongatus), longnose skate (Raja rhina), and Pacific hake (Merluccius productus). Relative downward irradiance was measured with MK-9 archival tags during annual trawl surveys along the U.S. west coast in 2009 and 2010. Near-bottom light levels were recorded for 818 hauls at depths less than 400m. Significant linear relationships were observed between catch per unit effort (CPUE, kgha−1) and near-bottom light (P<0.05). CPUE of arrowtooth flounder, longnose skate, and Pacific hake was negatively related to near-bottom light. For these species, CPUE decreased 16–22% per unit increase in log10 light (μEm−2s−1). CPUE of greenstriped rockfish increased 39% per unit increase in log10 light. Light, depth, and latitude explained 15–47% of the variance in CPUE for the four species. Catch probability was significantly related to light, depth, latitude, and relative time of day (P<0.05). For all species, catch probability varied inversely with light when depth was less than 200m. At depths of 200–300m, catch probability increased with light for arrowtooth flounder and greenstriped rockfish. Catch probability for Pacific hake decreased slightly at depths greater than 200m while longnose skate was relatively unaffected by light at these depths. We used these relationships to explain the variability in catch rates for individual species within bottom trawl surveys. By influencing the density and distribution of these groundfish species, light can alter catch rates. Furthermore, we found possible herding of greenstriped rockfish, and trawl avoidance by arrowtooth flounder, Pacific hake, and longnose skate.

Length–Length and Width–Length Conversion of Longnose Skate and Big Skate Off the Pacific Coast: Implications for the Choice of Alternative Measurement Units in Fisheries Stock Assessment

AbstractMost traditional fisheries models have size or stage–age relationships as their foundation. Two long‐established metrics used are FL and TL. Body length measurements are linked to age, maturity, and fecundity. Obtaining FL or TL measurements are not always convenient, especially for larger fish (&gt;100 cm TL). Two skate species, Longnose Skate Raja rhina and Big Skate R. binoculata, were collected from commercial fishery landings along the coast of Washington State and length–length or width–length conversions were investigated for four metrics of size: TL, tail only length (TOL), interspiracular width (ISW), and interorbital width (IOW). Relationships between TL and alternative measures were examined using model II regression analyses and confirmed a strong linear relationship in all cases (R 2 &gt; 0.94). It is likely that both TL and TOL measures have errors due to worn‐off tail portions; conversely, the ISW is nonlaborious and convenient to obtain. The ISW metric has a smaller coefficient of variation compared with IOW if we assume that both metrics have the same distribution of measurement errors. We recommend ISW as the preferred alternative metric in the assessment of large skate. The ISW will probably yield measurements that are equivalent, or potentially superior, to traditional metrics because the measurement is taken from body parts devoid of worn‐off portions.Received December 30, 2011; accepted June 13, 2013

The complete mitochondrial genome of the Longnose skate: Raja rhina (Rajiformes, Rajidae)

The complete sequence of mitochondrial DNA of a longnose skate, Raja rhina was determined for the first time. It is 16,910 bp in length containing 2 rRNA, 22 tRNA and 13 protein coding genes with the same gene order and structure as those of other Rajidae species. The nucleotide of L-strand is composed of 30.1% A, 27.2% C, 28.5% T and 14.2% G, showing a slight A + T bias. The G is the least used base and markedly lower at the third codon position (5.4%). Twelve of the 13 protein coding genes use ATG as their start codon while the COX1 starts with GTG. As for stop codon, only ND4 shows incomplete stop codon TA. This mitogenome is the first report for a species of the genus Raja, and providing a valuable resource of genetic information for understanding the phylogenetic relationship and the evolution of the genus Raja as well as the family, Rajidae.

Preliminary chemical and nutritional characterization of liver from longnose skates ( Raja rhina)

Skates ( Raja rhina) have recently become a small commercial fishery in Alaska and along the western United States coast. Most of the skate byproduct is discarded or made into meal; therefore, there is opportunity to enhance the utilization for skate byproducts. The objective of this research project was to chemically characterize longnose skate livers. Livers from five long nose skates, caught off the coast of Kodiak, Alaska, were obtained immediately after the fins (called “wings”) had been removed by a commercial processor. Each liver was subjected to the following analysis: proximate composition, minerals, amino acids, α-tocopherol, protein gel electrophoresis, fatty acid profiles, thiobarbituric acid reactive substances (TBARS) and biogenic amines (BA). Livers were composed of lipid (49.6%), moisture (41.0%), protein (10.9%) and ash (0.8%). High levels of α-tocopherol were found in the livers (142 μg/g oil). Fatty acid profile indicated that the lipids extracted from livers contained high concentrations of eicosapentaenoic acid (16.0%) and docosahexaenoic acid (17.7%). Average TBARS values were low at 1.5 μg malondialdehyde/g oil, indicating low levels of lipid oxidation. The lysine content as percent of total amino acids on a weight basis was 6.1% and methionine content was 2.8%. Analysis of BA found putrescine (31 mg/kg liver) and spermine (85 mg/kg liver) present. Preliminary results suggest long nose skate livers as an abundant source of n-3 fatty acids and amino acids.

Levels of connectivity between longnose skate (Dipturus oxyrinchus) in the Mediterranean Sea and the north-eastern Atlantic Ocean

Sequencing of a partial region of the mitochondrial control region has revealed no shared haplotypes between longnose skate (Dipturus oxyrinchus L.) sampled in the north-eastern Atlantic (Norway and Rockall) and those sampled in the Mediterranean (Mallorca). Bayesian estimation of the migration rate suggests little, if any, gene flow occurs between the regions and that the populations separated 20,000 years ago. These conclusions provide a genetic basis for long-standing observations, based on egg capsule and adult size, that longnose skate in the Mediterranean may be genetically isolated from other stocks. This result has important conservation implications for the threatened longnose skate.

Using food web model results to inform stock assessment estimates of mortality and production for ecosystem-based fisheries management

Examining food web relationships for commercially important species enhances fisheries management by identifying sources of variability in mortality and production that are not included in standard single-species stock assessments. We use a static mass-balance model to evaluate relationships between species in a large marine ecosystem, the coastal Gulf of Alaska, USA. We focus on food web relationships for four case-study species: Pacific halibut ( Hippoglossus stenolepis ), longnose skate ( Raja rhina ), walleye pollock ( Theragra chalcogramma ), and squids (order Teuthoidea). For each, we present the species’ position within the food web, evaluate fishing mortality relative to predation mortality, and evaluate diet compositions. We find that high trophic level (TL) species, whether commercially valuable (halibut) or incidentally caught (skates), have mortality patterns consistent with single-species assessment assumptions, where fishing mortality dominates natural mortality. However, assessments for commercially valuable (pollock) or incidentally caught (squids) mid-TL species can be enhanced by including food web derived predation information because fishing mortality is small compared with high and variable predation mortality. Finally, we outline food web relationships that suggest how production of species may change with diet composition or prey availability.

Morphological and molecular evidence for a new species of longnose skate (Rajiformes: Rajidae: Dipturus) from Argentinean waters based on DNA barcoding

Morphological and molecular evidence for a new species of longnose skate (Rajiformes: Rajidae: Dipturus) from Argentinean waters based on DNA barcoding

Morphological and molecular evidence for a new species of longnose skate (Rajiformes: Rajidae: Dipturus) from Argentinean waters based on DNA barcoding

A new species of Dipturus is described from ten specimens collected off Patagonia, Argentina. Morphological and molecular approaches were used to compare among specimens of recognized Dipturus species. By comparing morphometric, meristic and mitochondrial cytochrome c oxidase I (COI) sequence data, specimens referred to as longnose skate and originally regarded as D. chilensis were shown to be a discrete species as distinguished from both the Yellownose skate, D. chilensis and the Roughskin skate, D. trachyderma. Dipturus argentinensis n. sp. can be distinguished from all other southwestern Atlantic longnose skate species by its color pattern, lack of squamation on both upper and lower surfaces of the disc, and a long, thin tail that is approximately half the total length. The new species has one median row of 10 to 24 small caudal thorns, one or two interdorsal thorns and 35 to 40, and 34 to 43 tooth rows on upper and lower jaws, respectively. The 648 base pair COI mitochondrial DNA “barcodes” derived from specimens of D. argentinensis are identical to each other and exhibit greater than 3% sequence divergence from all other Dipturus species similarly characterized to date. Taken together, these independent morphological and molecular observations serve to corroborate one another and thus provide strong evidence for the recognition of D. argentinensis as a new species.

The population dynamics of the longnose skate, Raja rhina, in the northeast Pacific Ocean

The longnose skate, Raja rhina, is the most commonly landed skate species in the northeast Pacific Ocean. It also dominates survey catches in the area. Existing knowledge on skate biology and fisheries suggests that large skate species with late sexual maturation, like the longnose skate, are extremely vulnerable to overfishing, and if overfished they are slow to recover. Historically, in the US Pacific Coast skates have not supported directed fisheries, but have been taken as bycatch in other commercially important fisheries. For the past 13 years, landed catches of skates in waters off Washington, Oregon and California have significantly increased. Using the Stock Synthesis 2 modeling framework, a population model for the longnose skate was developed to assess the current state of the stock and reconstruct its past dynamics. Model results indicate that the longnose skate spawning biomass has slowly declined since 1915; the current stock biomass is estimated as 66% of its unexploited level. Uncertainty in regards to fishery-dependent data and female maturity parameters was explored through sensitivity analyses. The model results indicate that it is important to conduct species-specific identification in the fishery and monitor discard of longnose skate to improve the accuracy of fishery catch data and make assessment conclusions more robust.

Reproductive biology of two commercially exploited skates, Raja binoculata and R. rhina, in the western Gulf of Alaska

This study provides the first detailed information on the reproductive biology of two large and abundant eastern North Pacific Ocean skate species: big skate ( Raja binoculata) and longnose skate ( Raja rhina). Skates were collected in the western Gulf of Alaska during 2005 and 2006 after a targeted fishery for these two species developed around Kodiak Island, Alaska; both species are also taken as by-catch to other fisheries. A total of 307 females (20.1–183.3 cm TL) and 138 males (19.5–143.7 cm TL) R. binoculata, and 354 females (18.1–145.0 cm TL) and 318 males (21.1–135.8 cm TL) R. rhina were collected. Female R. binoculata were found to attain first (e.g., smallest individual) maturity at 125.8 cm TL and 50% at 148.6 cm TL. Males were found to attain first and 50% maturity at 124.0 and 119.2 cm TL, respectively. No gravid female R. binoculata, with egg cases in utero, were encountered during the study. Female R. rhina were found to attain first and 50% maturity at 102.2 and 113.1 cm TL, respectively. Gravid female R. rhina, with egg cases in utero, were recorded throughout the sampling period. Males attained first maturity at 101.0 cm TL and 50% maturity at 102.9 cm TL. Histological analysis did not reveal significant changes in spermatocyst production for either species during the sampling period. Both species appear to be reproductively active year-round as no seasonal cycle was evident. This study provides new and essential information on the reproductive biology of these two commercially targeted skate species.