A high power pulsed radio frequency electron linac is designed by BARC, India to accelerate 30 MeV, 10 A, 10 ns beam for neutron-time-of-flight applications. It will be used as a neutron generator and will produce ∼1012–1013 n/s. It is essential to reduce the beam instability caused by space charge effect and the beam cavity interaction. In this paper, the wakefield losses in the accelerating section due to bunch of RMS (Root mean square) length 2 mm (at the gun exit) is analysed. Loss and kick factors are numerically calculated using CST wakefield solver. Both the longitudinal and transverse wake potentials are incorporated in beam dynamics code ELEGANT to find the transverse emittance growth of the beam propagating through the linac. Beam loading effect is examined by means of numerical computation carried out in ASTRA code. Beam break up start current has been estimated at the end of the linac which arises due to deflecting modes excited by the high current beam. At the end, transverse beam dynamics of such high current beam has been analysed.