Long-term Monoculture Research Articles

Conversion to Greenhouse Cultivation from Continuous Corn Production Decreases Soil Bacterial Diversity and Alters Community Structure

Changes in crop types and long-term monoculture substantially impact soil microbial communities. Exploring these changes and their influencing factors is of great significance for addressing the challenges posed by continuous cropping. Soil surface layer samples from greenhouse tomatoes fields cultivated for 5 (Y5), 9 (Y9), 13 years (Y13), and a surrounding corn field (CK) as a control were analyzed. The Y13 sample showed a significant increase in the relative abundance of Pseudomonadota (43.1%) and a decrease in Actinobacteria (50.3%) compared to the CK sample. Soil bacterial alpha diversity generally declined from the CK to Y13 (0.1–22.2%) sample, with a small peak in Y9 for Chao1 and Observed_species. Significant differences in Chao1 and Observed_ species were observed between the CK and Y13 samples. Beta diversity analysis revealed a pronounced variation in soil bacterial community structure across planting years, with the divergence from the CK sample intensifying over time. In comparison to the Y5 vs. CK samples, Y9 and Y13 exhibited marked differences from the CK across the same and broader metabolic pathways, suggesting a potential convergence of microbial activities over time. The Y9 and Y13 samples showed significantly higher biosynthesis abundance (7.50% and 6.36%, respectively) than the CK. In terms of soil physicochemical indices, the carbon–nitrogen ratio was the primary factor influencing soil bacterial composition. In conclusion, we found that crop alteration and continued planting changed the soil’s bacterial composition and increasing planting years suppressed the soil’s bacterial diversity, leading to a stable bacterial ecology after nine years. Implementing appropriate measures during this critical period is vital for optimal soil utilization.

Synergistic changes in bacterial community composition, function, and soil characteristics of tomato rhizosphere soil under long-term monoculture conditions

Tomato is widely cultivated all over the world, and long-term monoculture has resulted in decreased tomato yields and stunted plant growth. Soil bacterial communities have a profound effect on plant growth and health, and the effect of different planting years on rhizosphere soil microorganisms of tomato is not clear. In this study, metagenomic sequencing was used to analyze the rhizosphere soil microorganisms of tomatoes cultivated continuously for 3, 6 years (short-term continuous cropping), 9, and 12 years (long-term continuous cropping) (LZ3, LZ6, LZ9, LZ12). The results showed that the pH in LZ9 was significantly higher than that in the other treatments, the relative abundance of Planctomycetes and Candidatus Rokubacteria in LZ3 were higher than those in the other treatments, the relative abundance of Proteobacteria was significantly higher in LZ6 and LZ9 than that in the other treatments, and the relative abundance of Chloroflexi and Bacteroidetes in LZ12 were higher than those in the other treatments. At the genus level, the relative abundance of Nocardioides, Sphingomonas, Pseudolabrys were lower in LZ3 than that in other treatments, and the relative abundance of Gaiella was significantly higher in short-term continuous cropping than that in LZ9. The pH, hydrolyzable nitrogen (HN), and available potassium (AK) were the most important factors driving the changes in microbial communities. The relative abundance of amino acid metabolism, terpenoid and polyketide metabolism decreased significantly with years of continuous cropping, and that total nitrogen (TN), HN, and available phosphorus (AP) were significantly correlated with translation, amino acid metabolism, and cell growth and death. Continuous cropping leads to nutrient imbalance in tomato soils, which affects the structure and functional composition of soil microbial communities, providing insights into microbial community response to continuous tomato cropping, but further in-depth studies are needed.

Diverse biological communities promote SOM molecular diversity and compositional transformations during natural fallow stage in paddy fields

Monoculture cultivation patterns in agro-ecosystems only provide less varied soil organic matter (SOM) molecules of plant origin. Whether and how the natural fallow stage between cultivation seasons facilitates the restoration of SOM molecular diversity and mitigates the adverse impacts of constant cropping pattern is elusive. Here, we utilized FT-ICR-MS, UHPLC-MS/MS, and high-throughput sequencing to investigate the biological change processes in SOM molecular composition under cultivation and fallow status in a long-farmed paddy field. Our study showed that SOM molecular diversity increased by 45.70%–85.36% in fallow stage compared to rice cultivation season. SOM molecular diversity was positively correlated with bacterial diversity and root exudate molecular diversity, and negatively correlated with fungal diversity. Notably, root exudate molecular diversity accounted for 48.48% of the variation in SOM molecular diversity. The increased SOM molecular diversity in fallow stage was attributed more to the diverse plant-produced molecules than the microbe-consumed molecules. Plant species turnover resulted in the conversion of root exudate components to Organoheterocyclic compounds and Organic acids/derivatives from rice planting stage to fallow stage. Recruited microbes were dominated by Basidiomycita, Ascomycota, Acidobacteria, Chloroflexi and Proteobacteria, resulting in the transformation from carbohydrates, lipid-like SOM molecules to lipid-like and lignin-like SOM molecules. Both field and microcosm experiments confirmed that root exudates are the main source of SOM molecules, and are influenced by the soil microbial community. This study provides solid evidence that fallow status in agro-ecosystems provides explosion of biodiversity and counteracts the negative effects of long-term monoculture cultivation on SOM diversity.Graphical

Effect of long-term radish (Raphanus sativus var. sativus) monoculture practice on physiological variability of microorganisms in cultivated soil

Long-term monoculture may affect soil environment biodiversity. An example of such a plant is radish (Raphanus sativus var. sativus), an economically important crop in Poland, a quick-growing vegetable with intensified harvest throughout the season. The aim of this study was to determine changes in biodiversity of soil under radish cultivation and to compare the research methods applied. The monoculture practice affected soil pH, but the organic carbon content remained stable. 16S RNA-seq analysis revealed changes in soil microbial population, with the dominant phyla Proteobacteria (37.3%), Acidobacteria (19%), and Actinobacteria (16%), and the dominant taxa Gaiella (1.59%), Devosia (1.51%) and Nocardioides (1.43%). These changes have not fully expressed in the number of culturable microorganisms, where only fungal abundance changed significantly. However, the physiological state of microbial cells (λ) indicated that oligotrophs and copiotrophs were in a vegetative (λ > 3.0) state at the beginning of the season and fungi at the end of the year. Changes in the biodiversity of soil microorganisms were visualised using Community Level Physiological Profiling, where an oscillation in Average Well Colour Development (OD560 = 0.78–1.48) was observed in successive months of radish culture, with biodiversity indices (Shannon and Substance richness) remaining similar. The greatest variation in the influence of monoculture practice on soil factors was observed for the soil enzymes activities (for dehydrogenase and peroxidase activities – 0.5 μg TPF/h/g DW and 1.5 μmolPYGL/h/g DW respectively). Alkaline phosphatases predominated among this group of enzymes, and the activity of carbon metabolism enzymes decreased over the season, except for invertases, where an increase in activity of up to 50 μg Glc/h/g DW was observed. All the parameters studied indicated changes in the soil environment. Nevertheless the microbial community remains stable during the whole experiment returning to equilibrium in a quite short time after changing conditions.

Immediate impacts of soybean cover crop on bacterial community composition and diversity in soil under long-term Saccharum monoculture.

Saccharum yield decline results from long-term monoculture practices. Changes in cropping management can improve soil health and productivity. Below-ground bacterial community diversity and composition across soybean (Glycine max (L.) Merr) cover crop, Saccharum monoculture (30+ year) and fallowed soil were determined. Near full length (~1,400 base pairs) of 16S rRNA gene sequences were extracted from the rhizospheres of sugarcane and soybean and fallowed soil were compared. Higher soil bacterial diversity was observed in the soybean cover crop than sugarcane monoculture across all measured indices (observed operationational taxonomic units, Chao1, Shannon, reciprocal Simpson and Jackknife). Acidocateria, Proteobacteria, Bacteroidetes and Planctomycetes were the most abundant bacterial phyla across the treatments. Indicator species analysis identified nine indicator phyla. Planctomycetes, Armatimonadetes and candidate phylum FBP were associated with soybean; Proteobacteria and Firmicutes were linked with sugarcane and Gemmatimonadetes, Nitrospirae, Rokubacteria and unclassified bacteria were associated with fallowed soil. Non-metric multidimensional scaling analysis showed distinct groupings of bacterial operational taxonomic units (97% identity) according to management system (soybean, sugarcane or fallow) indicating compositional differences among treatments. This is confirmed by the results of the multi-response permutation procedures (A = 0.541, p = 0.00045716). No correlation between soil parameters and bacterial community structure was observed according to Mantel test (r = 211865, p = 0.14). Use of soybean cover-crop fostered bacterial diversity and altered community structure. This indicates cover crops could have a restorative effect and potentially promote sustainability in long-term Saccharum production systems.

Plant parasitic nematodes in the soil and roots of winter wheat grown in crop rotation and long-term monoculture

Plant parasitic nematodes in the soil and roots of winter wheat grown in crop rotation and long-term monoculture

Characterization of human stem cell-derived hepatic stellate cells and liver sinusoidal endothelial cells during extended in vitro culture.

Background: There is a significant need for predictive and stable in vitro human liver representations for disease modeling and drug testing. Hepatic stellate cells (HSCs) and liver sinusoidal endothelial cells (LSECs) are important non-parenchymal cell components of the liver and are hence of relevance in a variety of disease models, including hepatic fibrosis. Pluripotent stem cell- (PSC-) derived HSCs (scHSCs) and LSECs (scLSECs) offer an attractive alternative to primary human material; yet, the suitability of scHSCs and scLSECs for extended in vitro modeling has not been characterized. Methods: In this study, we describe the phenotypic and functional development of scHSCs and scLSECs during 14 days of 2D in vitro culture. Cell-specific phenotypes were evaluated by cell morphology, immunofluorescence, and gene- and protein expression. Functionality was assessed in scHSCs by their capacity for intracellular storage of vitamin A and response to pro-fibrotic stimuli induced by TGF-β. scLSECs were evaluated by nitric oxide- and factor VIII secretion as well as endocytic uptake of bioparticles and acetylated low-density lipoprotein. Notch pathway inhibition and co-culturing scHSCs and scLSECs were separately tested as options for enhancing long-term stability and maturation of the cells. Results and Conclusion: Both scHSCs and scLSECs exhibited a post-differentiation cell type-specific phenotype and functionality but deteriorated during extended culture with PSC line-dependent variability. Therefore, the choice of PSC line and experimental timeframe is crucial when designing in vitro platforms involving scHSCs and scLSECs. Notch inhibition modestly improved long-term monoculture in a cell line-dependent manner, while co-culturing scHSCs and scLSECs provides a strategy to enhance phenotypic and functional stability.

Agroforestry—a key tool in the climate-smart agriculture context: a review on coconut cultivation in Sri Lanka

Long-term monoculture of coconuts has resulted in several land-use-related concerns, such as decreasing land productivity, degraded soil, and ineffective resource utilization on a local and global level. Modifying traditional coconut farming with agroforestry concepts is a well-suited predominant nature-based solution for Sri Lanka as well as for other coconut-growing countries to achieve environmental, social, and economic benefits. By intentionally and intensively integrating annual and perennial plants with farm animals in a dynamic and interactive manner, this land-use system creates a sustainable harmonious mini-ecosystem with landscape restoration. Agroforestry mixed with coconut cultivation decreases the risk of crop failure, generates additional income sources, and balances the ecosystem functions by increasing species richness, enhancing soil physical, biological, and chemical properties, opening new carbon sequestration pathways, purifying air and water sources, and being an excellent feedstock source for bioenergy generation. This environmentally friendly farming will promote the Kyoto Protocol and lessen global warming by limiting the atmospheric buildup of greenhouse gases. A proper and accurate plan is required to implement a successful and profitable long-lived coconut-based agroforestry system. The objective of this paper is to recognize the various agroforestry concepts applicable to coconut-based farming, highlight the wide range of benefits and ecosystem services that can be gained through in-situ and ex-situ agroforestry practices, and explore the challenges that may arise during the integration of agroforestry techniques into a coconut-based farming system.

Response of abundance, diversity, and network of rhizosphere fungal community to monoculture of cut chrysanthemum.

The effects of different monoculture years on rhizosphere fungal communities (abundance, diversity, structure, and cooccurrence network) of cut chrysanthemum were determined. Three different monoculture years were (i) planting for only 1year (Y1), (ii) continuous monoculture for 6years (Y6), and (iii) continuous monoculture for 12years (Y12). Compared to the Y1 treatment, the Y12 treatment significantly decreased the rhizosphere fungal gene copy numbers but increased the potential pathogen Fusarium oxysporum (P < 0.05). Both the Y6 and Y12 treatments significantly increased fungal diversity (Shannon and Simpson indices), but Y6 had great potential to enhance fungal richness (Chao1 index) relative to the Y12 treatment. Monoculture treatments decreased the relative abundance of Ascomycota but increased that of Mortierellomycota. Four ecological clusters (Modules 0, 3, 4, and 9) were observed in the fungal cooccurrence network across the Y1, Y6, and Y12 treatments, and only Module 0 was significantly enriched in the Y12 treatment and associated with soil properties (P < 0.05). RDA (redundancy analysis) and Mantel analysis showed that soil pH and soil nutrients (organic carbon, total nitrogen, and available phosphorus) were the key factors affecting fungal communities during monoculture of cut chrysanthemum. Overall, the changes in soil properties were responsible for shaping rhizospheric soil fungal communities in long-term rather than short-term monoculture systems. KEY POINTS: • Both short- and long-term monocultures reshaped the soil fungal community structure. • Long-term monoculture enhanced the network complexity of the fungal community. • Soil pH, C and N levels mainly drove modularization in the fungal community network.

Effects of the Long-Term Continuous Cropping of Yongfeng Yam on the Bacterial Community and Function in the Rhizospheric Soil

Replant disease caused by continuous cropping commonly occurs in yam with consecutive monoculture. However, little is known about how the continuous cropping of yam affects the rhizospheric soil bacterial community structure. In this study, the effects of continuous cropping on rhizospheric soil characteristics, bacterial diversity, and community structure were investigated in the Yongfeng yam fields under monoculture for 1, 5, 10, 15, and 20 years. Long-term monoculture caused soil acidification and increased the concentration of available potassium (AK) and available phosphorus (AP), and soil bacterial richness, but decreased the soil bacterial diversity. An exception was for the field under monoculture for 20 years as it showed the highest bacterial diversity. The relative abundance of beneficial bacteria, such as Proteobacteria, Actinobacteria, and Chloroflexi decreased while the relative abundance of harmful bacteria, including Gemmatimonadetes and Acidobacteria, increased with an extended continuous cultivation time. The networks varied among yams with different cultivation years and became complex with the increase in cultivation years. However, after time in monoculture, the bacterial network decreased gradually and existed stably. These changes in bacterial community composition and co-occurrence of networks may increase the potential risk of soil-borne disease and reduce the yield and quality of Yongfeng yam.

Differentially enriched fungal communities in root rot resistant and susceptible varieties of tobacco (Nicotiana tabacum L.) under continuous monoculture cropping.

Root rot is a major disease of tobacco that causes crop losses of up to 15-20% of global tobacco production. The present study aimed to compare the fungal communities, and physicochemical properties of rhizosphere soil of root rot resistant (Yunyan 87; Y) and susceptible (Honghua Dajinyuan; H) tobacco varieties. Four treatments of each variety under continuous monocropping cultures included: control groups (HT0 and YT0); 2 years of continuous cropping (HT2 and YT2); 4 years of continuous cropping (HT4 and YT4); and 8 years of continuous cropping (YT8 and HT8). The soil physicochemical properties including available nitrogen (AN), available phosphorus (AP), available potassium (AK), and organic matter (OM) were increased (p < 0.05) from HT0 to HT8, whereas the resistant variety (Y) showed an inconsistent trend from YT0 to YT8. The pH was decreased (p < 0.05) from HT0 to HT8 and YT0 to YT8. Further, the disease incidence rate and disease index of the H variety also increased (p < 0.05) from HT0 to HT8. Alpha diversity analysis revealed that susceptible variety had higher fungal diversity from HT0 to HT8, while resistant variety exhibited lower diversity from YT0 to YT8. Ascomycota and Mortierellomycota were the dominant phyla in H and Y. Ascomycota abundance was increased (p < 0.05), whereas Mortierellomycota was decreased (p < 0.05) for continuous cropping years in H and Y. Penicillium, Fusarium, and Chrysosporium were the top three abundant genera in both varieties. The relative abundance of Penicillium spp. was increased (p < 0.05) in Y, whereas decreased (p < 0.05) in H variety. Specifically, Chrysosporium spp. was increased (p < 0.05) whereas Fusarium spp. was decreased (p < 0.05) in YT2. Redundancy analysis (RDA) revealed that fungal communities in H and Y rhizospheres were influenced by pH and carbon content, respectively. The top three highly enriched (p < 0.05) pathways in both varieties were fatty acid elongation, fatty acid β-oxidation I, and glyoxylate cycle. Our study concluded that resistant variety exhibited lower fungal diversity and functionally enriched metabolic pathways than susceptible variety that might be the result of molecular breeding practices, however, the relative abundance of Penicillium spp. were increased in resistant variety under long-term monoculture cropping.

Synergistic changes of rhizosphere bacterial community and soil properties in greenhouse soils under long-term tomato monoculture

Tomato is a dominant vegetable crop in China that is often continuously cultivated in greenhouses, which causes a series of soil quality issues such as nutrient imbalance or microbial degradation. The deterioration caused by long-term monoculture remain poorly understood. Here, we investigated the microbiological and edaphic parameters in a chronosequence of tomato monoculture greenhouse (0–20th years) in Northwest China via 16S rRNA sequencing and soil nutrient determination. We found that the rhizosphere bacteria shifted significantly throughout the 20-year cropping period, but was more closely related to the no monoculture soil bacteria in the last five-year period (15–20th years) than in the first five-years (1–6th year). Soil properties of nitrogen (N), phosphorus (P), and organic carbon (TOC) increased first, then decreased (9th year), and finally remained stable (15–20th year). In addition, monoculture influenced soil properties that subsequently drove the bacterial community change. N, P, and TOC directly affected bacterial composition and potential functions. Intriguingly, functional genes related to stress resistance increased, while others associated with microbial growth decreased, suggesting that monoculture increased the stress of bacterial community. This study revealed how bacteria and their functioning were impacted by 20 years of monoculture, which was strongly associated with the changes of soil properties. This further illustrates the cause of how soil health and quality deterioration in long-term monoculture systems.

Plants control the structure of mycorrhizal and pathogenic fungal communities in soil in a 50-year maize monoculture experiment

AimsSaprotrophic soil fungi participate in biomass mineralization, inhibit pathogen development and promote plant growth. Pathogens accumulate in soil and decrease crop yields. The structure of fungal communities is determined mainly by the organic matter content and pH of soil. Little is known about the influence of crop rotation and long-term monoculture on saprotrophic fungi that decompose plant roots and crop residues as sources of soil biomass.MethodsFungal communities that promote plant growth (arbuscular mycorrhizal fungi (AMF), yeasts, Trichoderma spp.), cellulolytic fungi and pathogenic species were analyzed in a 6-year crop rotation system (maize – spring barley – peas – winter rapeseed – winter wheat – sugar beets) and in 50-year maize monoculture. Fungal DNA was extracted from the rhizosphere and plant roots, and the ITS2 region of fungal rDNA was analyzed by high-throughput sequencing. In both treatments, weeds were controlled chemically (terbuthylazine + mesotrione + s-metolachlor) or mechanically.ResultsA total of 311 fungal species were identified. The biodiversity of soil fungi, in particular AMF and yeasts, was higher in monoculture than in crop rotation. Maize pathogens were more frequently identified in monoculture, whereas species of the genus Trichoderma were more prevalent in crop rotation. Herbicides clearly increased the abundance of cellulolytic fungi of the phyla Mucoromycota and Mortierellomycota, Mortierella spp. and Minimedusa polyspora. The abiotic properties of soil were affected by the cropping sequence. The content of organic carbon (Corg) and the availability of P and Mg decreased in monoculture. Maize yields were bound by a strong positive correlation with the availability of macronutrients and Corg in soil, as well as a weak positive correlation with the abundance of Trichoderma spp., Mucoromycota and Mortierellomycota.ConclusionsFungi exert a complex and ambiguous effect on maize biomass yields, whereas a decrease in the macronutrient content of soil in monoculture strongly decreases maize yields. In the long term, the cropping sequence considerably influences the structure of the soil microbiome which can be a reservoir of unique species and species that minimize the negative effects of monoculture in agroecosystems.Graphical

Soil conditions on bacterial wilt disease affect bacterial and fungal assemblage in the rhizosphere

Natural soil has the ability to suppress the soil-borne pathogen to a certain extent, and the assemblage of soil microbiome plays a crucial role in maintaining such ability. Long-term monoculture accelerates the forms of soil microbiome and leads to either disease conducive or suppressive soils. Here, we explored the impact of soil conditions on bacterial wilt disease (healthy or diseased) under long-term tobacco monoculture on the assemblage of bacterial and fungal communities in bulk and rhizosphere soils during the growth periods. With Illumina sequencing, we compared the bacterial and fungal composition of soil samples from tobacco bacterial wilt diseased fields and healthy fields in three growth periods. We found that Proteobacteria and Ascomycota were the most abundant phylum for bacteria and fungi, respectively. Factors of soil conditions and tobacco growth periods can significantly influence the microbial composition in bulk soil samples, while the factor of soil conditions mainly determined the microbial composition in rhizosphere soil samples. Next, rhizosphere samples were further analyzed with LEfSe to determine the discriminative taxa affected by the factor of soil conditions. For bacteria, the genus Ralstonia was found in the diseased soils, whereas the genus Flavobacterium was the only shared taxon in healthy soils; for fungi, the genus Chaetomium was the most significant taxon in healthy soils. Besides, network analysis confirmed that the topologies of networks of healthy soils were higher than that of diseased soils. Together, our results suggest that microbial assemblage in the rhizosphere will be largely affected by soil conditions especially after long-term monoculture.

Assessing Soil Quality Index Under Different Sugarcane Monoculture Periods and Soil Orders

ABSTRACT Intensive sugarcane cultivation has been carried out for more than 30 years in Indonesia and analysis of the Soil Quality Index (SQI) has not been widely carried out, especially on Entisols, Inceptisols, and Vertisols. This study aimed to assess SQI due to long-term monoculture periods in different soil orders. This study was conducted in multilocation design with two factors. The first factor was soil orders (Entisols, Inceptisols, and Vertisols), and the second one was monoculture periods (1–10, 11–20, and 21–30 years). The physical-chemical-biological properties of soil were analyzed. SQI score was calculated using Non-linear-Additive, Non-linear-Weighted Additive, Linear-Additive, and Linear-Weighted Additive scoring methods. The result show that SQI Linear-Additive method has the highest sensitivity level to observe the impact of the long-term sugarcane monoculture (2.210). SQI increased 28.2% in Inceptisols, decreased 25.8% in Vertisols and no clear pattern SQI in Entisols until monoculture 30 years monoculture periods. SQI has a greater effect on sugarcane productivity (R2 = 0.4472), than the effect with sucrose content (R2 = 0.1056). The long-term impact of sugarcane monoculture on SQI is highly dependent on soil order, so land management in a site-specific location is highly recommended based on the soil order so that sugarcane cultivation can be sustainable, resulting in optimal yields.

Variations of rhizosphere and bulk soil microbial community in successive planting of Chinese fir (Cunninghamia lanceolata).

Successive planting and monoculture, as common forest management methods, are widely used globally, especially in Chinese fir plantations in the subtropical areas of southern China. Although soil fertility depletion and productivity decline caused by successive planting have been widely reported, the underlying mechanism is still ambiguous. In this study, the composition and diversity of soil microorganisms (rhizosphere and bulk soils) in Chinese fir seedlings exposed to successive planting soils (first-generation Chinese fir seedings, FCP. second-generation Chinese fir seedings, SCP. third-generation Chinese fir seedings, TCP) and broadleaf tree species soil (Phoebe zhennan S. Lee et F. N. Wei, CK) were examined with high-throughput sequencing technology. Our findings revealed that the diversity and richness of bacterial and fungal communities were remarkably reduced in TCP than FCP and SCP, and were remarkably different between FCP and SCP. At the phylum level, the fungi with greatest relative abundance were Basidiomycota (5.74–32.88%) and Ascomycota (57.63–87.38%), while the bacteria with the greatest relative abundance were Acidobacteria (23.16–31.17%) and Proteobacteria (24.71–29.32%) for all treatments in both soil types. Additionally, the relative abundance of some pathogens (Penicillium and Burkholderia) was significantly higher in TCP than in FCP and SCP, suggesting that the presence of pathogens is an important factor in increasing the incidence of soil-borne sickness. Moreover, changes in fungal and bacterial communities were predominantly driven by soil dissolved organic carbon (DOC), DOC/DON ratio (DOCN), NO3–-N, microbial biomass carbon (MBC), and MBC/MBN ratio (MBCN). Overall, the long-term monoculture of Chinese fir promotes the microecological imbalance of rhizosphere and bulk soil, and remarkably reduced soil microbial community diversity. These results can provide a scientific support for the implementation of future management measures for fir plantations (e.g., fertilization, addition of microbial fungicides, and construction of mixed forests).

Overfertilization reduces tomato yield under long-term continuous cropping system via regulation of soil microbial community composition.

Long-term monoculture cropping and overfertilization degrade soil fertility, which reduces crop growth and promotes the development of soil-borne diseases. However, it remains unclear what the temporal effects of the above factors are on the tomato yield and microbial community structure. Thus, a greenhouse experiment with different amounts of fertilization [2,196 kg ha−1 (control) and 6,588 kg ha−1 (overfertilization) of inorganic fertilizers (NPK)] was carried out with the soils used previously for 1, 2, and 12 years under monoculture of tomato. A 12-year overfertilization decreased soil pH by 1.37 units. Soil electrical conductivity (EC) and concentrations of soil nutrients are enhanced with the increase in tomato cropping duration. Higher content of soil nutrients was found under overfertilization compared to the control in the 12-year soil. Overfertilization decreased the activity of β-1,4-glucosidase (BG) and oxidase compared to the control in the 12-year soil. Bacterial diversity and richness decreased by 6 and 31%, respectively, under overfertilization in 12-year soil compared to the control. The relative abundance of Gemmatimonas and Gp6 in 12-year soil under overfertilization was 17 and 78%, respectively, lower than in control soil. Soil pH and total carbon (TC) were the major factors explaining changes in microbial composition. A 38% decrease in yield was caused by overfertilization in 12-year soil compared to the control. Microbial community composition was the main factor that moderated tomato yield. In addition, fertilization rather than cropping duration had a greater impact on tomato yield. Therefore, our results suggest that long-term overfertilization influenced soil pH, soil TC, and soil microbial community composition to regulate tomato yield.

Variations in Soil Nutrient Dynamics and Bacterial Communities After the Conversion of Forests to Long-Term Tea Monoculture Systems.

The soil microbial community is a key indicator to evaluate the soil health and productivities in agricultural ecosystems. Monoculture and conversions of forests to tea plantations have been widely applied in tea plantation globally, but long-term monoculture of tea plantation could lead to soil degradation and yield decline. Understanding how long-term monoculture systems influence the soil health and ecosystem functions in tea plantation is of great importance for soil environment management. In this study, through the comparison of three independent tea plantations across eastern China composed of varying stand ages (from 3 to 90 years after conversion from forest), we found that long-term tea monoculture led to significant increases in soil total organic carbon (TOC) and microbial nitrogen (MBN). Additionally, the structure, function, and co-occurrence network of soil bacterial communities were investigated by pyrosequencing 16S rRNA genes. The pyrosequencing analysis revealed that the structures and functions of soil bacterial communities were significantly affected by different stand ages, but sampling sites and land-use conversion (from forest to tea plantation) had stronger effects than stand age on the diversity and structure of soil bacterial communities. Soil bacterial diversity can be improved with increasing stand ages in tea plantation. Further RDA analysis revealed that the C and N availability improvement in tea plantation soils led to the variation of structure and function in soil bacterial communities. Moreover, co-occurrence network analysis of soil bacterial communities also demonstrated that interactions among soil bacteria taxa were strengthened with increasing stand age. Our findings suggest that long-term monoculture with proper managements could be beneficial to soil ecosystems by increasing the C and N content and strengthening bacterial associations in tea plantations. Overall, this study provides a comprehensive understanding of the impact of land-use change and long-term monoculture stand age on soil environments in tea plantation.

Long-Term Monocultures of American Ginseng Change the Rhizosphere Microbiome by Reducing Phenolic Acids in Soil

American ginseng (Panax quinquefolius L.) is an important cash crop, but long-term monoculture often results in serious root rot disease and yield reduction. The dynamics of soil phenolic acids perform an important function in soil microbe–plant interactions, but the extent to which changes in phenolic acids that occur under the continuous monoculture of American ginseng influence growth and the rhizosphere microbial community are unclear. In this study, American ginseng was planted in soil that had been used for 3 years of continuous monoculture (3 yr) and into a soil with no history of planting American ginseng (0 yr). Soil phenolic acids, rhizosphere microbiome characteristics, and pathogen suppression were analyzed. In the findings, the diversity and structure of the rhizosphere microbial community were affected by monoculture history, as the diversity of fungi and bacteria in 3 yr soil was higher than in 0 yr soil. The physiological performance of American ginseng in 3 yr soil was significantly lower than that in 0 yr soil. Soil phenolic acid contents decreased with the longer monoculture history, and high concentrations of phenolic acids suppressed the growth of American ginseng-specific pathogens. Soil phenolic acids appeared to modulate the pathogen population and the rhizosphere microbiome in American ginseng monocultures.

Impacts of continuous and rotational cropping practices on soil chemical properties and microbial communities during peanut cultivation

Long-term monocultures have severely inhibited the cultivation of Chinese peanut (Arachis hypogaea L.). In this study, the effects of continuous cropping on soil chemical properties and microbial communities were investigated in peanut fields that had been in crop rotation for 10 years and in monoculture for 10 years. The results found that long-term monoculture increased the activities of available potassium, available phosphorus, available nitrogen, soil organic matter, urease, acid phosphatase and catalase; while decreasing the activity of catalase. The diversity and abundance of soil bacteria and fungi is higher under continuous peanut cultivation. At the genus level, the relative abundance of potentially beneficial microflora genera was higher in the rhizosphere soil of rotational cropping than in continuous cropping, while the opposite was true for the relative abundance of potentially pathogenic fungal genera. Principal coordinates and cluster analysis indicated that continuous cropping altered the structure of the microbial community. The results of the functional predictions showed significant differences in the functioning of the rhizosphere microbial community between continuous and rotational cropping. In conclusion, long-term continuous cropping changed the chemical properties of the soil, altered the structure and function of the soil bacterial and fungal communities in peanut rhizosphere, which to some extent reduced the relative abundance of potentially beneficial microbial genera and increased the relative abundance of potentially pathogenic fungal genera, thus increasing the potential risk of soil-borne diseases and reducing the yield and quality of peanut. Therefore, in the actual production process, attention should be paid not only to the application of chemical fertilizers, but also to crop rotation and the application of microbial fertilizers.