ABSTRACT Indoor positioning with high accuracy plays an important role in different application scenarios. As a widely used mobile communication signal, the Long-Term Evolution (LTE) network can be well received in indoor and outdoor environments. This article studies a method of using different reference signals in the LTE downlink for carrier phase time of arrival (TOA) estimation. Specifically, a solution is proposed and a multipath tracking Software Defined Receiver (SDR) is developed for indoor positioning. With our SDR indoor positioning system, the pilot signals of the LTE signals are firstly obtained by the coarse synchronization and demodulation. Then, with the assistance of the pilot signals, the time delay acquisition, the multipath estimating delay lock loop (MEDLL) algorithm, and the multipath anomaly detection are sequentially carried out to obtain navigation observations of received signals. Furthermore, to compare the performance of different pilot signals, the Secondary Synchronous Signals (SSS) and Cell Reference Signals (CRS) are used as pilot signals for carrier phase-based TOA estimation, respectively. Finally, to quantify the accuracy of our multipath tracking SDR, indoor field tests are carried out in a conference environment, where an LTE base station is installed for commercial use. Our test results based on CRS show that, in the static test scenarios, the TOA accuracy measured by the 1-σ error interval is about 0.5 m, while in the mobile environment, the probability of range accuracy within 1.0 m is 95%.