logK Values Research Articles

Distribution and partition of polycyclic aromatic hydrocarbon in surface water of the Pearl River Estuary, South China

Water samples were collected in the Pearl River Estuary in July 2002 and April 2003. The particulate and dissolved phase polycyclic aromatic hydrocarbons (PAHs) were determined. Total PAH concentrations in water samples were higher in April of 2003 (C (p): 4.0-39.1 ng/L or 445.1-1,089.9 ng/g; C (w): 15.9-184.2 ng/L) than in July of 2002 (C (p): 2.6-26.6 ng/L or 297.7-1,336.6 ng/g; C (w): 12.9-28.3 ng/L). It was found that 5, 6-ring PAHs enrich in the inner estuary samples and so did 3-ring PAHs in the July samples. Compositional differences in the suspended particulate matter (SPM) might be responsible for this observation. The partition coefficient (K (p)) increased with the increasing of the particular organic carbon content of suspended particles as well as the salinity of water, decreased with the increase of the total suspended particles content of samples. A linear correlation between logK (OC) and logK (OW) was found in two sampling periods. The observed values of logK (OC) exceed their predicted values derived form linear free energy relationship between logK (oc) and logK (ow), which could be attributed to the nonlinear sorption of soot-like carbons in suspended particles.

Retention characteristics of a new butylimidazolium-based stationary phase. Part II: anion exchange and partitioning

A surface-confined ionic liquid (SCIL) and a commercial quaternary amine silica-based stationary phase were characterized employing the linear solvation energy relationship (LSER) method in binary methanol/water mobile phases. The retention properties of the stationary phases were evaluated in terms of intermolecular interactions between 28 test solutes and the stationary phases. The comparison reveals a difference in the hydrophobic and hydrogen bond acceptance interaction properties between the two phases. The anion exchange retention mechanism of the SCIL phase was demonstrated using nucleotides. The utility of the SCIL phase in predicting logk (IL/water) values by chromatographic methods is also discussed.

Quantitative in silico analysis of the selectivity of graphitic carbon synthesized by different methods

Molecular interaction energy (MI) values calculated by molecular mechanics (MM2) using a model graphitic carbon phase were used for studying the selectivity of different types of graphitic carbon columns. The MI values well correlated with logk values measured on a graphitic carbon synthesized from 100% organic materials (r = 0.961, n = 13) but not with logk values measured on a graphitic carbon synthesized using silica matrix (r = 0.558, n = 17). The latter logk values correlated well with the hydrogen bonding energy values calculated using a model silica phase (r = 0.856, n = 17). The reason for the poor correlation of the logk values measured on the latter graphitic carbon is that the silica matrix might not be completely eliminated in the production process.

A study of solvent effects on complex formation of tungsten(VI) with ethylenediaminediacetic acid in aqueous solutions of propanol

By using spectrophotometric and potentiometric techniques, the formation constants of the species formed in the systems H++W(VI) + ethylenediaminediacetic acid and H+ + ethylenediaminediacetic acid were determined in aqueous solutions of propanol at 25°C and a constant ionic strength of 0.1 mol dm−3 sodium perchlorate. The composition of the complex was determined by the continuous variation method. It was shown that tungsten(VI) formed a mononuclear 1: 1 complex with ethylenediaminediacetic acid of the type WO3L3− at −log[H+] = 5.8. The formation constants in various media were analyzed in terms of the Kamlet-Taft parameters. Solvents were parameterized by dipolarity/polarizability scales π*, hydrogen-bond donor (HBD) strength α, and hydrogen-bond acceptor strength β. Linear dependences (LSERs) on these solvent parameters were used to correlate and predict a wide variety of solvent effects and provide an analysis of them. Linear relationships were observed when log KS values were plotted versus π*. Finally, the results are discussed in terms of the effect of solvents on complex formation.

Retention prediction of adrenoreceptor agonists and antagonists on a diol column in hydrophilic interaction chromatography

Retention prediction models using multiple linear regression (MLR) and artificial neural networks (ANN) were developed for adrenoreceptor agonists and antagonists chromatographed on a diol column under hydrophilic interaction chromatographic (HILIC) mode at three pH conditions (3.0, 4.0 and 5.0). Using stepwise MLR, the retention behavior of the analytes was satisfactorily described by a five-predictor model; the predictors being the percentage of acetonitrile in the mobile phase (% ACN), the logarithm of partition coefficient (logD), the number of hydrogen bond donor (HBD), the number of hydrogen bond acceptor (HBA), and the total absolute atomic charge of the molecule (TAAC). Among the five descriptors, % ACN had the strongest effect on the retention as indicated by its relatively higher standardized coefficient compared to the other four predictors. The inclusion of the four predictors which are related to the properties of the compounds (logD, HBD, HBA and TAAC), suggested hydrophilic interaction, hydrogen bonding and ionic interaction as possible mechanisms of retention of the analytes on the studied system. The models derived from MLR also showed adequate fit as proven by the high correlation (R2 as high as 0.9667) between observed and predicted logk values for the training set and good predictive power on the test set (R2 greater than 0.97). ANN analyses of the data were also conducted using the five predictors derived from MLR as inputs and logk as output. The trained ANNs showed better predictive abilities as compared to MLR models as indicated by relative higher R2 and lower root mean square error of predictions (RMSEP) for both training and test sets. The derived models can be used as references for method development and optimization of chromatographic conditions for the separation of adrenoreceptor agonists and antagonists.

Modeling the movement of a pH perturbation and its impact on adsorbed zinc and phosphate in a wastewater‐contaminated aquifer

Chemical conditions were perturbed in an aquifer with an ambient pH of 5.9 and wastewater‐derived adsorbed zinc (Zn) and phosphate (P) contamination by injecting a pulse of amended groundwater. The injected groundwater had low concentrations of dissolved Zn and P, a pH value of 4.5 resulting from equilibration with carbon dioxide gas, and added potassium bromide (KBr). Downgradient of the injection, breakthrough of nonreactive Br and total dissolved carbonate concentrations in excess of ambient values (excess TCO2) were accompanied by a decrease in pH values and over twentyfold increases in dissolved Zn concentrations above preinjection values. Peak concentrations of Br and excess TCO2 were followed by slow increases in pH values accompanied by significant increases in dissolved P above preinjection concentrations. The injected tracers mobilized a significant mass of wastewater‐derived Zn. Reactive transport simulations incorporating surface complexation models for adsorption of Zn, P, hydrogen ions, and major cations onto the aquifer sediments, calibrated using laboratory experimental data, captured most of the important trends observed during the experiment. These include increases in Zn concentrations in response to the pH perturbation, perturbations in major cation concentrations, attenuation of the pH perturbation with transport distance, and increases in alkalinity with transport distance. Observed desorption of P in response to chemical perturbations was not predicted, possibly because of a disparity between the range of chemical conditions in the calibration data set and those encountered during the field experiment. Zinc and P desorbed rapidly in response to changing chemical conditions despite decades of contact with the sediments. Surface complexation models with relatively few parameters in the form of logK values and site concentrations show considerable promise for describing the influence of variable chemistry on the transport of adsorbing contaminants.

DSC study of linolenic acid autoxidation inhibited by BHT, dehydrozingerone and olivetol

Abstract Non-isothermal oxidation of linolenic acid (LNA) in bulk phase was monitored by differential scanning calorimetry. The kinetic parameters E a, Z and k (activation energies, pre-exponential factors, and rate constants, respectively) were calculated by Ozawa-Flynn-Wall method for the first detectable exothermic effect of uninhibited LNA oxidation. The kinetic parameters were also calculated for LNA oxidation inhibited by 2,6-di-tert-butyl-4-methylphenol (BHT), and two natural compounds, 1,3-dihydroxy-5-pentylbenzene (olivetol), and 4-(4’-hydroxy-3’-methoxyphenyl)-3-buten-2-one (DHZ, dehydrozingerone) at various concentrations. For oxidation processes at 25, 90 and 180°C the plots of logk values vs. concentration of phenolic compounds indicated that optimal concentration of inhibitor determined for one particular temperature cannot be extrapolated to other temperatures.

Free-base corroles: determination of deprotonation constants in non-aqueous media

A series of free-base corroles with different electron-donating or electron-withdrawing substituents were reacted with piperidine, 4-aminopyridine, 2-methylimidazole, 2-aminopyridine or pyridine in PhCN and the UV-visible spectral changes monitored during conversion of ( Cor ) H 3 to [( Cor ) H 2]- as a function of the concentration and strength of the added organic base. Analysis of the UV-visible spectral changes as a function of the added base concentration enabled calculation of equilibrium constants ( logK ) for deprotonation of each corrole under the given experimental conditions. Relationships are examined between the experimentally measured logK values and previously published spectroscopic and structural properties of the compounds.

Solubilization of nitrotoluenes in micellar nonionic surfactant solutions

A key factor in selecting surfactants to enhance chemical or biological transformation or physical removal of an organic pollutant from contaminated soil is knowledge of the pollutant's solubility behavior in the surfactant solution. This study investigated the influence of nonionic surfactant structure on the solubility of 4-nitrotoluene (NT), 2,3-dinitrotoluene, 2,4-dinitrotoluene, 2,6-dinitrotoluene, and 2,4,6-trinitrotoluene (TNT) at room temperature. For a series of alkyl phenol ethoxylates (Tergitol NP-8 to NP-40), decreasing the ethoxylate chain length increased the solubility of these nitrotoluenes by a factor of two or less in 10 g l(-1) surfactant solutions, but did not significantly change their molar solubilization ratios (MSR, e.g. 0.02 for TNT) or their micelle-water partition coefficients (K(m), e.g. 3.4 for TNT). For Tergitol NP-8 solutions ranging from 1.0 to 12.4 g l(-1), no enhancement in NT solubility was found, suggesting that the cloud point was reached. The MSRs for Tween 80 were higher than those of Tween 20 and the MSRs of Brij-58 were higher than those for Brij-35. When comparing solutes, NT had the highest solubility and MSR (0.28-0.41), while TNT had the lowest solubility and MSR (0.02-0.03). A linear relationship between K(m) values and octanol-water partition coefficients based on Triton X-100 predicted the logK(m) values within 0.5 of their measured values. A linear solvation free energy correlation for K(m) suggested the importance of solute volume and effective hydrogen bond basicity in the partitioning process while implying that the nitrotoluenes are solubilized in a polar portion of the micelle.

Density Functional Theory‐Based Prediction of Some Aqueous‐Phase Chemistry of Superheavy Element 111. Roentgenium(I) Is the “Softest” Metal Ion.

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The Affinity of Indium(III) for Nitrogen-donor Ligands in Aqueous Solution. A Study of the Complexing of Indium(III) with Polyamines by Differential Pulse Voltammetry, Density Functional Theory, and Crystallography

The affinity of In(III) for N-donor ligands was investigated by differential pulse voltammetry, DFT calculations, and crystallography. The structure of [In(tpen)(CH3COO)](ClO4)2 ・ 0.5H2O (1) is reported (tpen = N,N,N´ ,N´-tetrakis(2-pyridylmethyl)ethylenediamine): Monoclinic, P21/n, a = 8.687(4), b = 7.767(8), c = 20.432(10) Å , β = 93.372(8)°, Z = 4, R = 0.0518. The In(III) center is 7-coordinate, with six In-N bonds to the tpen ligand in the range 2.306 - 2.410 Å, and a unidentate acetate group with In-O = 2.247 Å. The formation constants of In3+ in 0.1 M NaNO3+ at 25 °C are (M = In(III), L = ligand, H = proton): L = triethylenetetramine, logβ (MLH2) = 25.3±}0.3, logK1 = 14.43±}0.09, and logβ (ML(OH)2) = 27.7±}0.1; tetraethylenepentamine, logβ (MLH) = 20.8±}0.2, and ML (logβ (ML) = 20.1±}0.3); diglycolic acid, (logβ (MLH) = 8.06±}0.06), logK1 = 6.02±} 0.06, logβ2 = 9.40±}0.08; tpen, logK1 = 17.71±}0.07; N,N´-bis(2-pyridylmethyl)ethylenediamine, logK1 = 14.69±}0.05; 1,10-phenanthroline, logK1 = 6.81±}0.07, logK2 = 6.44±}0.07, logK3 = 6.20±}0.08. Correlations are shown between the determined formation constants for the polyamines and logK1(NH3) values for a wide variety of metal ions. For M(II) ions, the log K1(NH3) values are experimental data, but for M(III) ions the data are predicted by an empirical dual-basicity equation, including logK1(NH3) = 4.0 for In(III). DFT calculations are used to obtain ΔE for the reaction [M(H2O)6]n+ + NH3 ⇆[M(H2O)5NH3]n+ + H2O for M(II) through M(IV) ions in water, represented as a structureless medium with the dielectric constant of water. Correlations are found that support the predicted value of logK1(NH3) for In(III) of 4.0. The nature of the intercepts on such correlations are discussed.

Effect of solvation on the reaction rate constants of the diphenylaminyl radical with phenols and hydroquinones

The kinetics of the reactions of the diphenylaminyl radical with unhindered phenols and hydroquinones in acetonitrile at 294 K was studied by laser flash photolysis. The rate constants k range from 104 to 106 L mol−1 s−1 and depend on the nature of substituents in phenols and hydroquinones. The k values also depend on the solvent nature and decrease by 6.5 and 50 times, on the average, when decane is replaced by toluene and acetonitrile, respectively. The logk values in decane, toluene, and acetonitrile depend linearly on the dissociation energies DOH of OH bonds in phenols and hydroquinones. Taking into account this dependence and using the experimental k value in acetonitrile, the estimate DOH = 346.6 kJ mol−1 was obtained for 2,5-dichlorohydroquinone. The thermodynamic parameters of formation of H-bonded complexes of phenols and hydroquinones with toluene and acetonitrile were calculated in the framework of the multiplicative approach to thermodynamic description of H-bonding. The rate constants k(free) of the reactions of the diphenylaminyl radical with free phenols and hydroquinones in toluene and acetonitrile were estimated. Comparison of the k(free) values with each other and experimental k values in decane suggests that the changes in k upon solvent replacement is mainly caused by the formation of H-complexes of phenols and hydroquinones with the solvent.

Voltammetry as Virtual Potentiometric Sensor in Modelling of a Metal/Ligand System and Refinement of Stability Constants. Part 5

AbstractThe concept of virtual potential (employed here in modelling operations), a unique experimental setup designed and built in our laboratories, and new regression equations derived for nonlinear fitting of quasi‐reversible direct‐current polarograms were combined with the existing rigorous treatment and refinement of polarographic data to establish reliable metal/ligand models and accurate stability constants for the lead(II)/glycine/OH− and lead(II)/sarcosine/OH− systems (sarcosine = N‐methylglycine). In the case of glycine, the complexes [M(HL)], [ML], [ML2], and [ML3] were identified, and their stability constants (as log β) were established to be 10.51 ± 0.06, 4.58 ± 0.02, 7.19 ± 0.10, and 9.27 ± 0.02, respectively, the complex [ML3] being reported here for the first time (Table 2). The system with sarcosine involving [M(HL)], [ML], [ML2], [ML3], and [ML2(OH)2], with the stability constants (as log β) 11.01 ± 0.04, 4.18 ± 0.03, 7.23 ± 0.03, 9.1 ± 0.3, and 15.97 ± 0.07, respectively, is reported for the first time (Table 3). The log K1 value for PbII with sarcosine is a fraction of a log unit smaller when compared with the PbII complex with glycine, in agreement with the literature data for CuII, NiII, and ZnII showing the same trend for these two ligands. The proposed nonlinear curve‐fitting operations expand the applicability of polarography to study reliably and conveniently quasi‐reversible, on the polarographic time scale, metal/ligand systems (systems with involved heterogeneous kinetics).

Density Functional Theory-Based Prediction of Some Aqueous-Phase Chemistry of Superheavy Element 111. Roentgenium(I) Is the ‘Softest' Metal Ion

A previous approach (Hancock, R. D.; Bartolotti, L. J. Inorg. Chem. 2005, 44, 7175) using DFT calculations to predict log K1 (formation constant) values for complexes of NH3 in aqueous solution was used to examine the solution chemistry of Rg(I) (element 111), which is a congener of Cu(I), Ag(I), and Au(I) in Group 1B. Rg(I) has as its most stable presently known isotope a t(1/2) of 3.6 s, so that its solution chemistry is not easily accessible. LFER (Linear free energy relationships) were established between DeltaE(g) calculated by DFT for the formation of monoamine complexes from the aquo ions in the gas phase, and DeltaG(aq) for the formation of the corresponding complexes in aqueous solution. For M2+, M3+, and M4+ ions, the gas-phase reaction was [M(H2O)6]n+(g) + NH3(g) = [M(H2O)5NH3]n+(g) + H2O(g) (1), while for M+ ions, the reaction was [M(H2O)2]+(g) + NH3(g) = [M(H2O)NH3]+(g) + H2O(g) (2). A value for DeltaG(aq) and for DeltaE for the formation of M = Cu2+ in reaction 1, not obtained previously, was calculated by DFT and shown to correlate well with the LFER obtained previously for other M2+ ions, supporting the LFER approach used here. The simpler use of DeltaE values instead of DeltaG(aq) values calculated by DFT for formation of monoamine complexes in the gas phase leads to LFER as good as the DeltaG-based correlations. Values of DeltaE were calculated by DFT to construct LFER with M+ = H+, and the Group 1B metal ions Cu+, Ag+, Au+, and Rg+, and with L = NH3, H2S, and PH3 in reaction 3: [M(H2O)2]+(g) + L(g) = [M(H2O)L]+g) + H2O(g) (3). Correlations involving DeltaE calculated by DMol3 for H+, Cu+, Ag+, and Au+ could reliably be used to construct LFER and estimate unknown log K1 values for Rg(I) complexes of NH3, PH3, and H2S calculated using the ADF (Amsterdam Density Functional) code. Log K1 values for Rg(I) complexes are predicted that suggest the Rg(I) ion to be a very strong Lewis acid that is extremely "soft" in the Pearson hard and soft acids and bases sense.

Investigation of lipophilicity of anticancer‐active thioquinoline derivatives

The lipophilicity of a series of anticancer propargylthioquinoline derivatives has been investigated using chromatographic and computational methods. The parameters of relative lipophilicity (R(MO) and logk0) of the tested compounds were determined experimentally both by reversed-phase thin layer (RP-TLC), and high-performance liquid chromatographic methods (RP-HPLC, LiChrospher RP18 column), with mixtures of acetonitrile and water as mobile phases. Their phospholipophilicity (logk(0IAM)) was determined using immobilized artificial membrane HPLC (IAM. PC DD2 Regis column). Mobile phase acetonitrile concentrations were in the ranges 50-90% (RP-TLC), 55-90% (RP-HPLC) and 35-60% (IAM-HPLC). The R(M), logk and logk(IAM) values of the compounds investigated were linearly dependent on acetonitrile concentration. The analysis led to the calculation of R(MO), logk0 and logk(0IAM) parameter values for each of the tested compounds. Their partition coefficients (logP) were also calculated with the Pallas and CAChe programs. The obtained results indicated that, among experimental methods, both RP-TLC and RP-HPLC gave similar results, and these methods enable the determination of lipophilicity of derivatives of thioquinolines. Using the IAM-HPLC technique a simple method of estimation of phospholipoplilicity was described. The CAChe program might better predict calculated lipophilicity logP values, and therefore is a useful tool for the early stage of design of new propargyl thioquinolines.

Complexes of Greatly Enhanced Thermodynamic Stability and Metal Ion Size-Based Selectivity, Formed by the Highly Preorganized Non-Macrocyclic Ligand 1,10-Phenanthroline-2,9-dicarboxylic Acid. A Thermodynamic and Crystallographic Study

The metal ion-complexing properties of 1,10-phenanthroline-2,9-dicarboxylic acid (PDA) are reported. The protonation constants (pK1 = 4.75, pK2 = 2.53) and formation constants (log K(1)) for PDA with Mg(II) (3.53), Ca(II) (7.3), Sr(II) (5.61), Ba(II) (5.43), La(III) (13.5), Gd(III) (16.1), Zn(II) (11.0), Cd(II) (12.8), Pb(II) (11.4), and Cu(II) (12.8) were determined by UV-vis spectroscopy in 0.1 M NaClO4 at 25 degrees C. The log K(1) values for most of these metal ions were high enough that they were not displaced from their PDA complexes even at pH 2. The log K(1) values were determined using the UV spectra to monitor the competition with EDTA (or DTPA; EDTA = ethylendiamine tetraacetic acid, DTPA = diethylenetriamine pentaacetic acid) as a function of pH according to the equilibrium: M(EDTA) + PDA + nH+ = M(PDA) + EDTAHn. The log K1 values indicate that the rigid extended aromatic backbone of PDA leads to high levels of ligand preorganization and selectivity toward large metal ions (e.g., Ca(II), Cd(II), Gd(III)) with an ionic radius of about 1.0 A and greatly enhanced thermodynamic stability as compared to similar ligands without the reinforcing aromatic backbone. The structure of [Ca(PDA)(H2O)2].2H2O (1) is reported: orthorhombic, Fdd2, a = 44.007(9) A, b = 18.945(4) A, c = 7.2446(14) A, V = 6040(2) A(3), Z = 16, R = 0.0882. The Ca(II) ion has a coordination number of eight, lying in the plane of the tetradentate PDA, with Ca-N bonds averaging 2.55 A and Ca-O bonds to the two acetate groups of PDA averaging 2.45 A. These are very close to the normal Ca-L bonds of this type, supporting the idea that a metal ion the size of Ca(II) (ionic radius approximately 1.0 A) will fit into PDA in a low-strain manner. The remaining four coordination sites on Ca(II) in 1 come from two coordinated water molecules and a chelating carboxylate bridging from an adjacent [Ca(PDA)(H2O)2].2H2O complex. Potential applications of PDA as a ligand in biomedical applications such as Gd(III) contrast agents in MRI are discussed.

Solute-Solvent Interaction Effects on Protonation Equilibrium of Substituted N-Benzylidene-2-hydroxyanilines in Aqueous Ethanol: The Application of Factor Analysis to Solvatochromic Parameters and Protonation Equilibria

In this study, the stoichiometric protonation constants, logK OH and logK NH, of sixteen substituted N-benzylidene-2-hydroxyanilines have been determined potentiometrically in ethanol-water mixtures of varying composition (10–80% ethanol by volume) at 25.0±0.1°C. The values of the constants, logK, were submitted to factor analysis in order to obtain the number of factors which affect the variation of the whole data sets of protonation constants and, afterwards, to target factor analysis to identify these factors. The influence of solvatochromic parameters in the interactions between Schiff bases derivatives and the solvent studied was identified and quantified. Kamlet and Taft general equations allow calculation of the logK values of Schiff bases studied in any ethanol-water mixtures up to 80% (v/v) and thus provide the knowledge of the acid-base behaviour in these solvent media. Further, the quasi-lattice quasi-chemical (QLQC) theory of preferential solvation has been applied to quantify the preferential solvation by water of electrolytes in ethanol-water mixtures.

Micelles for the Self‐Assembly of “Off–On–Off” Fluorescent Sensors for pH Windows

A micellar approach is proposed to build a series of systems featuring an "off-on-off" fluorescent window response with changes in pH. The solubilizing properties of micelles are used to self-assemble, in water, plain pyrene with lipophilized pyridine and tertiary amine moieties. Since these components are contained in the small volume of the same micelle, pyrene fluorescence is influenced by the basic moieties: protonated pyridines and free tertiary amines behave as quenchers. Accordingly, fluorescence transitions from the "off" to the "on" state, and viceversa, take place when the pH crosses the pK(a) values of the amine and pyridine fragments. To obtain an "off-on-off" fluorescent response in this investigation we use either a set of dibasic lipophilic molecules (containing covalently linked pyridine and tertiary amine groups) or combinations of separate, lipophilic pyridines and tertiary amines. The use of combinations of dibasic and monobasic lipophilic molecules also gives a window-shaped fluorescence response with changes in pH: it is the highest pyridine pK(a) and the lowest tertiary amine pK(a) that determine the window limits. The pK(a) values of all the examined lipophilic molecules were determined in micelles, and compared with the values found for the same molecules in solvent mixtures in which they are molecularly dispersed. The effect of micellization is to significantly lower the observed protonation constants of the lipophilized species. Moreover, the more lipophilic a molecule is, the lower the observed logK value is. Accordingly, changing the substituents on the basic moieties or modifying their structure, tuning the lipophilicity of the mono- or dibases, and choosing among a large set of possible combination of lipophilized mono- and dibases have allowed us to tune, almost at will, both the width and the position along the pH axis of the obtained fluorescent window.

Probing Structure–Function Relationships of Serine Hydrolases and Proteases with Carbamate and Thiocarbamate Inhibitors

Benzene-1,3-di-N-n-octylcarbamate (1), benzene-1-hydroxyl-3-N-n-octylcarbamate (2), benzene-1,3-di-N-n-ocztylthiocarbamate (3), and benzene-1-hydroxyl-3-N-n-octylthiocarbamate (4) are synthesized from 1,3-benzene-diol and are characterized as the pseudo-substrate inhibitors of acetylcholinesterase, butyrylcholinesterase, cholesterol esterase, lipase, trypsin, and chymotrypsin. For these six enzyme inhibitions by 1-4, the pKi values are linearly correlated with their log ki values - Brønsted plots. Therefore, 1-4 inhibit these enzymes through a common mechanism. Moreover, both pKi and log ki values for the inhibitions by 1,3, and 4 are linearly correlated with both pKi and log ki values for the inhibitions by 2, respectively. Thus, the pKi values for the inhibitions by 2 are defined as the nucleophilicity constants of these enzymes (nenzyme). The log k2 values for the inhibitions by 1-4 are also linearly correlated with the nenzyme values. Therefore, the nucleophilicity for serine hydrolases and proteases toward 1-4 also applies the Swain-Scott correlations.

Factors Controlling Metal-Ion Selectivity in the Binding Sites of Calcium-Binding Proteins. The Metal-Binding Properties of Amide Donors. A Crystallographic and Thermodynamic Study

The metal-ion complexing properties of the ligand EDTAM (ethylenediamine-N,N,N',N'-tetraacetamide) are investigated as a model for the role of amide oxygen donors in the binding sites of Ca-binding proteins. The structures of the complexes [Ca(EDTAM)NO3]NO3 (1), [La(EDTAM)(H2O)4](NO3)3.H2O (2), and [Cd(EDTAM)(NO3)]NO3 (3) are reported: 1 monoclinic, P2(1)/c, a = 10.853(2) angstroms, b = 12.893(3) angstroms, c = 13.407(3) angstroms, beta = 103.28(3) degrees, Z = 4, R = 0.0281; 2 triclinic, P, a = 8.695(2) angstroms, b = 9.960(2) angstroms, c = 16.136(3) angstroms, alpha = 95.57(3) degrees, beta = 94.84(3) degrees, gamma = 98.72(3) degrees, Z = 2, R = 0.0394; 3 monoclinic, P2(1)/c, a = 10.767(2) angstroms, b = 12.952(2) angstroms, c = 13.273(2) angstroms, beta = 103.572(3) degrees, Z = 4, R = 0.0167. Compounds 1 and 3 are isostructural, and the EDTAM binds to the metal ion through its two N-donors and four O-donors from the amide groups. Ca(II) in 1 is 8-coordinate with a chelating NO3- group, while Cd(II) in 3 may possibly be 7-coordinate, with an asymmetrically coordinated NO3- that is best regarded as unidentate. The La(III) in 2 is coordinated to the EDTAM in a manner similar to that of 1 and 3, but it is 10-coordinate with four water molecules coordinated to the La(III). The formation constants (log K1) for complexes of a variety of metal ions with EDTAM are reported in 0.1 M NaNO3 at 25.0 +/- 0.1 degrees C. These are compared to the log K1 values for en (ethylenediamine) and THPED (N,N,N',N'-tetrakis(2-hydroxypropyl)-ethylenediamine). For large metal ions, such as Ca2+ or La3+, log K1 increases strongly when the four acetamide groups are added to en to give EDTAM, whereas for a small metal ion, such as Mg2+, this increase is small. The log K1 values for EDTAM compared to THPED suggest that the amide oxygen is a much stronger base than the alcoholic oxygen. Structures of binding sites in 40 Ca-binding proteins are examined. It is shown that the Ca-O=C bond angles involving coordinated amides in these sites are large, commonly being in the 150-180 degrees range. This is discussed in terms of the idea that for purely ionic bonding the M-O=C bond angle will approach 180 degrees, while for covalent bonding the angle should be closer to 120 degrees. How this fact might be used by the proteins to control selectivity for different metal ions is discussed.