Lodging Resistance Research Articles

How do novel plant growth regulators and cultivation models strategies affect mechanical strength, lodging resistance and maize productivity in semi-arid regions?

Plant growth regulators are synthetic compounds that have become a significant and technical guarantee for agricultural productivity. In China, "Jindeli", which contains active elements of ethephon and cycocel (EC), has been proven to prevent maize stem elongation, improve maize stem thickness, stem morphology and mechanical strength, root growth, lodging resistance, and yield under various cultivation models. Diethyl aminoethyl hexanoate (DA-6) can promote cell division and growth. From 2020–2021, four growth regulators sprays were used to conduct a field experiment; G1: water spraying; G2: EC spraying; G3: DA-6 spraying; G4: EC+DA-6 spraying under two cultivation models; R: ridge covered with plastic film mulching and T: traditional flat planting without plastic mulching. The results indicated that RG4 treatment considerably decreased plant height, internode length, ear height, lodging rate, and center of gravity height, while improved the internode bending strength, cross-sectional area, cortical thickness, and stem vascular bundles as compared with rest of all other treatments. RG4 treatment considerably improved internode diameter, stem mechanical strength, filling degree, root growth, mean tilt angle, and lignin content, while significantly reducing LAI. In addition, RG4 considerably enhanced the quality of corn stems, such as increasing mechanical properties and enhancing the compressive strength of corn stalks that content of hemicellulose, cellulose, and lignin has been increased. Furthermore, RG4 treatment significantly improved grain yield by optimizing leaf layer structure and increasing bleeding saps levels, increasing the grains per row and ear. Thus, under the RG4 treatment maize lodging rate was decreased 72.1%, and increased WUE (52.8%), and grain yield (46.6%). In conclusion, the results clearly demonstrate that in the semi-arid regions risk of lodging can be avoided by spraying EC+DA-6 with ridge covered plastic film mulching to the enriched stalk quality, shaping plant morphological characteristics, and proving a stable cultivation model to improving maize productivity.

Effect of a novel dwarfing mutant site on chromosome 4B on agronomic traits in common wheat.

The introduction of dwarfing genes triggered a wave of "green revolution". A number of wheats dwarfing genes have been reported in previous studies, and only a small fraction of these have been applied to production practices. Therefore, the development of novel dwarfing genes for wheat is of great value. In this study, a novel dwarfing site, Rht-yz, identified in the Yanzhan mutation, is located on chromosome 4B (30-33MB) and its mechanism of action is different from that of Rht-B1b (C-T mutation), but whether it affects the Rht-B1a (TraesCS4B02G043100) or other genes is unclear. Exogenously applied GA3 experiments showed that Rht-yz is one of the gibberellin-insensitive dwarf genes. The effects of the dwarf gene Rht-yz on agronomic traits in wheat were evaluated in the field using Yanzhan, Yanzhan mutations, F2:3 and F3:4 lines. The results showed that Rht-yz improved lodging resistance by reducing plant height, increasing diameter, wall thickness and mechanical strength of the basal stem. In terms of yield traits, Rht-yz had negative effects on tiller number plant-1, biomass plant-1 and yield plant-1, but had no significant effect on harvest index, 1000-kernel weight and spike traits. In addition, Rht-yz significantly increased crude protein, wet gluten and starch content. Therefore, the rational use of the new dwarfing site Rht-yz has potential and value in dwarf wheat breeding.

Optimal N fertilizer management method for improving maize lodging resistance and yields by combining controlled-release urea and normal urea

Despite being an efficient nitrogen (N) management method, the effects of controlled-release urea combined with normal urea (CRUNU) on stem and root lodging and yield in maize have been rarely reported. Therefore, we conducted a field trial for three years between 2020 and 2022 using two N fertilizer types (CRUNU and normal urea (NU)) and three N application levels (low: 135 kg N ha–1; medium: 180 kg N ha–1; and high: 225 kg N ha–1) to evaluate their effects on stem and root lodging and the yield in maize, and the factors involved. The results showed that, compared with NU, CRUNU reduced the stem and root lodging rate under the three N application rates, and all were lowest under the medium N application rate. The decreased stem and root lodging rate was mainly attributed to the improved the synchronization of nitrogen supply and demand, reduced population traits (plant height, ear height, and center of gravity height), improved morphological traits (length and mass density) for the basal second, third, and fourth internodes (I2, I3, and I4), increased mechanical properties (stem breaking strength and rind penetration strength), greater stem lodging resistance index (SLRI), enhanced chemical compositions (lignin and its related synthetase activities, cellulose, and hemicellulose) in I2, I3, and I4, and increases in the stem bending strength, root average diameter, and vertical root-pulling resistance under CRUNU. In addition, the SLRI values for different internodes followed the order of: I2 > I3 > I4, thereby indicating that I2 and I3 played important roles in stem lodging resistance. Furthermore, compared with NU, the maize grain yield increased by 1.27–44.83% under CRUNU with the three N application rates. In particular, there was no significant difference in the grain yield between the high and medium N application rates under CRUNU. In conclusion, CRUNU combined with N application at a rate of 180 kg ha–1 may be a superior N fertilizer management method.

Effect of planting density on yield and architecture suitability of groundnut (Arachis hypogaea) varieties

A field experiment was conducted during rainy (kharif) seasons of 2018 and 2019 at the research farm of Sri Venkateswara Agricultural College (Acharya N. G. Ranga Agricultural University), Tirupati, Andhra Pradesh, to study the effect of planting density on yield and architecture suitability of groundnut (Arachis hypogaea L.) varieties. The experiment included 4 sowing densities (D1, 33.3 plants/m2; D2, 50 plants/m2; D3, 66.6 plants/m2 and D4, 100 plants/m2) and 3 genotypes with varying architecture (G1, Kadiri 6-erect; G2, Kadiri 9-decumbent 2; and G3, Dharani-decumbent 3). The results showed that across planting densities, Dharani and Kadiri 9 genotypes showed higher architectural traits, structural carbohydrates and kernel yield compared to the Kadiri 6. A significant positive correlation was detected between the lodging percentage and both plant height (r = 0.88**) and internodal length (r = 0.61*). Significant negative correlations, were identified between lodging percentage and several parameters, including leaf thickness (r = -0.92**), specific leaf weight (r = -0.93**), stem diameter (r = -0.79**), specific stem weight (r = -0.97**), number of branches (r = -0.72**), cellulose content (r = -0.80**), and lignin content (r = -0.79**). These findings indicate that the decumbent architecture is optimal for achieving groundnut lodging resistance and kernel yield in high-density planting systems.

Yield, lodging, and water use efficiency of Tef [Eragrostis tef (zucc) Trotter] in response to carbonized rice husk application under variable moisture condition.

Terminal drought and lodging are among the major yield-limiting factors for tef cultivation in the highly weathered soils of the Ethiopian highlands. Therefore, a study was conducted to assess the yield and lodging responses of tef to varying moisture depletion levels (MDL) and the application of carbonized rice husk (CRH). A two-year 4×4 factorial experiment with 20, 35, 55, and 75% MDL and 0, 291, 582, and 873 kg ha-1 of CRH was laid out in a split-plot design, with each treatment replicated four times. The pooled mean ANOVA showed leaf area index (LAI) and lodging index (LI) were not significantly influenced by the main and interaction effects of MDL and CRH (p > 0.05); however, individual year ANOVA showed that both LI and LAI were influenced by the interaction of MDL and CRH (p<0.05) in 2021 and 2022, respectively. The lowest LI (19.7%) was obtained from the application of 873 kg CRH ha-1, followed by 20.6% from 582 kg CRH ha-1 in 2022. A 20.7% LI reduction was recorded in 2022 compared to 2021. Tef plant height and number of tillers per plant were significantly affected by MDL at p<0.05 and p<0.01, respectively, but not by CRH and its interaction with MDL. The effect of MDL was significant on tef HI (p<0.01) but not on traits including grain yield, straw yield, and water use efficiency. In conclusion, the pooled mean analysis result showed that, though there was no significant difference in yield, tef irrigated at 55% MDL provided a maximum HI of 33.8%, which was 6.21% more than the control, and increased the level of lodging resistance with a LI of 31.9%, which was next to 75% MDL with 582 kg ha-1 CRH. The authors suggested that the research should further be verified across locations for wide application.

Integrated VIS/NIR Spectrum and Genome-Wide Association Study for Genetic Dissection of Cellulose Crystallinity in Wheat Stems.

Cellulose crystallinity is a crucial factor influencing stem strength and, consequently, wheat lodging. However, the genetic dissection of cellulose crystallinity is less reported due to the difficulty of its measurement. In this study, VIS/NIR spectra and cellulose crystallinity were measured for a wheat accession panel with diverse genetic backgrounds. We developed a reliable VIS/NIR model for cellulose crystallinity with a high determination coefficient (R2) (0.95) and residual prediction deviation (RPD) (4.04), enabling the rapid screening of wheat samples. A GWAS of the cellulose crystallinity in 326 wheat accessions revealed 14 significant SNPs and 13 QTLs. Two candidate genes, TraesCS4B03G0029800 and TraesCS5B03G1085500, were identified. In summary, this study establishes an efficient method for the measurement of cellulose crystallinity in wheat stems and provides a genetic basis for enhancing lodging resistance in wheat.

Management of Seeding Rate and Nitrogen Fertilization for Lodging Risk Reduction and High Grain Yield of Mechanically Direct-Seeded Rice under a Double-Cropping Regime in South China

Precision hill-drop direct seeding using mechanical drilling is a unique direct seeding technique employed in south China that offers advantages such as excellent grain yield and high lodging resistance. Improving yield and lodging-related traits is essential for efforts to improve mechanically direct-seeded rice (MDSR) production. Seeding rates (SR) and nitrogen (N) fertilization rate are two of the main factors affecting grain yield and lodging resistance under MDSR production. However, little information about double-season MDSR production in south China is available. Here, we evaluated yield and lodging risk for two rice cultivars Huanghuazhan, HHZ, lodging-resistant; Xiangyaxiangzhan, XYXZ, lodging-susceptible across two consecutive growing seasons under two under two seeding rates (LSR, 30 cm × 18 cm; HSR, 30 cm × 12 cm) and three N fertilization rates (N1 = 100 kg ha−1, reduced N; N2 = 150 kg ha−1, normal N; and N3 = 200 kg ha−1, enhanced N). We found that increased SR and N fertilization rate improved grain yield and increased lodging risk. SR and N were consistently and positively related to plant height (PH), gravity center height (GCH), the length from the broken basal internode to the panicle tip (SL), the fresh plant weight of the plant part above the broken point (FW), and the length of the two basal internodes. SR and N decreased breaking force (F) and breaking strength (BM), driving increased lodging risk as reflected by increases in lodging index (LI) values. Culm diameter (CD) and culm wall thickness (CWT) did not respond consistently to SR and N treatments. Correlation analysis revealed that PH, GCH, the length of first and second basal internodes, FW, and bending moment for the whole plant (WP) were positively correlated with LI, while F and BM were negatively associated with LI. These findings suggest that the increased lodging risk resulting from high SR could be mitigated by applying appropriate rates of N; that is, this work suggests that grain yield can be maximized and lodging risk minimized by increasing SR while decreasing N fertilization rate. Seasonal differences in the effects of SR and N fertilization should be considered to achieve a high grain yield and maintain high lodging resistance. Our study suggests that increasing SR and decreasing N fertilization can enhance rice grain yield while improving lodging resistance for both varieties. Optimizing grain yield by increasing SR while reducing lodging risk by lowering N application rates may maintain lodging resistance and improve grain yield.

Biological and economic traits of Yasmina – a new variety of six-row spring barley with high productive potential

Abstract. The Yasmina variety is a new, highly productive spring fodder barley. It was created at the Institute of Agriculture in Karnobat by means of a combinatorial selection method. The biological and economic traits of the variety were tested in the Institute’s competitive variety trials and the IASAS system during 2019-2020. The aim of this study was to present the biological and economic traits of the new recognized spring six-row barley variety Yasmina. In the ecological network regions, it demonstrated high productivity. The mean yield from the new variety obtained in 4 Bulgarian regions was proven higher than the one from the standard variety Venera by 22.0%. During the testing period, the variety realized a yield of up to 6500 kg/a. With high protein content of 13.51%, it is ideally suited for fodder.The variety has good lodging resistance. Yasmina was recognized as an original cultivar with Order No RD-12-4/10 Mar 2021 by the Minister of Agriculture, Food and Forestry and was approved for entry in List A of the Official Variety List of the Republic of Bulgaria.

Silicon Fertilizer Addition Can Improve Rice Yield and Lodging Traits under Reduced Nitrogen and Increased Density Conditions

Reducing nitrogen fertilizer application, selecting a reasonable planting density, and adding silicon fertilizer can be used together to decrease excessive nitrogen fertilizer inputs in rice fields, reduce production costs, and ensure stable rice yield. However, the dynamics of the stem and internodes, as well as the changes in the physical and physiological characteristics of rice under a combination of these three strategies, are still unclear. In this study, we aimed to clarify these effects to improve the efficiency of rice production in northeastern China. A 2-year field experiment was conducted using five treatments: a conventional densification treatment (DM), a densification combined with reduced N input (−20%) treatment (DLM), and three densifications combined with reduced N input (−20%) and basal silicon fertilizer treatments (low fertilizer: DLMS1; medium fertilizer: DLMS2; and high fertilizer: DLMS3). This study revealed that the addition of silicon fertilizer improved rice yield compared to that under reduced nitrogen or increased density treatments alone, prevented excessive ineffective tillering after a density increase, and increased the number of productive panicles. Among the treatments, the DLMS3 treatment had the highest yields of 10.53 t/ha and 10.73 t/ha over the 2 years. Reducing nitrogen and increasing density reduced the weight and length of single panicles, while the addition of silicon fertilizer was beneficial for improving stem toughness, improving the physical and physiological characteristics of the plants and panicles, and enhancing plant bending resistance. Among the treatments, DLMS3 had the highest bending resistance, which increased by 440.1 g and 503.8 g compared to the lowest values in the DM treatment in 2020 and 2021, respectively. Nitrogen reduction resulted in the lowest lodging index values, with DLMS3 having the lowest values in both years, which decreased by 19.6% and 22.5% compared to the highest values in DM (2020) and DLM (2021), respectively. This study indicates that the application of 150.0 kg/ha silicon fertilizer in combination with reduced nitrogen and increased density (DLMS3) reduces the lodging index while ensuring rice yield, preventing a tradeoff between yield reduction and lodging due to a density increase or due to nitrogen reduction combined with a density increase and allowing for a reduction in nitrogen fertilizer input, which could ensure a uniform yield and an increase in lodging resistance. These results provide a scientific basis for rice cultivation measures that lead to high yield and lodging resistance while protecting the environment.

Registration of USDA‐N6006 soybean germplasm combining high yield, flood tolerance, and elevated oil content

AbstractUSDA‐N6006 soybean [Glycine max (L.) Merr.] (Reg. no. GP‐527, PI 704140) is a conventional F4–derived early maturity group (MG) VI germplasm jointly released by USDA‐ARS and North Carolina Agricultural Research Service in 2023. USDA‐N6006 is the first MG VI, publicly released germplasm that combines flood tolerance with high‐yield lodging resistance, and elevated seed oil. Over 19 environments of the MG VI USDA Southern Uniform Soybean Trials (2017–2018), seed yield of USDA‐N6006 (3393 kg ha−1) was similar to high‐yielding lodging‐resistant check cultivars ‘NC‐Dunphy’ (3427 kg ha−1) and ‘NC‐Dilday’ (3475 kg ha−1). It matured 1 day earlier than NC‐Dunphy and exhibited similar lodging scores. Over 5 years of testing in North Carolina (2016–2019), USDA‐N6006 exhibited very robust flood tolerance. Mean flooding scores were numerically or statistically (p &lt; 0.05) superior to the four flood‐tolerant controls at both V4 and R1 growth stages. USDA‐N6006 was not intentionally bred to be flood tolerant and identified as such only through an extensive screening of “in house” USDA breeding lines. USDA‐N6006 and most of its antecedents are unique in that they are derived from unreleased breeding lines developed at the flood prone Tidewater Research station in North Carolina. Inadvertent selection for flood tolerance may have been a part of the USDA's long‐term breeding effort to improve yield. Seed oil content of USDA‐N6006 (237 g kg−1) was similar to that of elevated seed oil cultivar NC‐Dilday, but significantly higher than NC‐Dunphy (228 g kg−1) in the Uniform Trials. Seed protein content and estimated meal protein contents of USDA‐N6006 (389 g kg−1 and 46.4%, respectively) were similar to that of NC‐Dunphy. USDA‐N6006 should be excellent parental stock for applied breeding in the southern United States.

GmSTF accumulation mediated by DELLA protein GmRGAs contributes to coordinating light and gibberellin signaling to reduce plant height in soybean

Plant height influences plant architecture, lodging resistance, and yield performance. It is modulated by gibberellic acid (GA) metabolism and signaling. DELLA proteins, acting as central repressors of GA signaling, integrate various environmental and hormonal signals to regulate plant growth and development in Arabidopsis. We examined the role of two DELLA proteins, GmRGAa and GmRGAb, in soybean plant height control. Knockout of these proteins led to longer internodes and increased plant height, primarily by increasing cell elongation. GmRGAs functioned under different light conditions, including red, blue, and far-red light, to repress plant height. Interaction studies revealed that GmRGAs interacted with the blue light receptor GmCRY1b. Consistent with this, GmCRY1b partially regulated plant height via GmRGAs. Additionally, DELLA proteins were found to stabilize the protein GmSTF1/2, a key positive regulator of photomorphogenesis. This stabilization led to increased transcription of GmGA2ox-7b and subsequent reduction in plant height. This study enhances our understanding of DELLA-mediated plant height control, offering Gmrgaab mutants for soybean structure and yield optimization.

CRISPR/Cas9-mediated enhancement of semi-dwarf glutinous traits in elite Xiangdaowan rice (Oryza sativa L.): targeting SD1 and Wx genes for yield and quality improvement.

In rice cultivation, the traits of semi-dwarfism and glutinous texture are pivotal for optimizing yield potential and grain quality, respectively. Xiangdaowan (XDW) rice, renowned for its exceptional aromatic properties, has faced challenges due to its tall stature and high amylose content, resulting in poor lodging resistance and suboptimal culinary attributes. To address these issues, we employed CRISPR/Cas9 technology to precisely edit the SD1 and Wx genes in XDW rice, leading to the development of stable genetically homozygous lines with desired semi-dwarf and glutinous characteristics. The sd1-wx mutant lines exhibited reduced gibberellin content, plant height, and amylose content, while maintaining hardly changed germination rate and other key agronomic traits. Importantly, our study demonstrated that exogenous GA3 application effectively promoted growth by compensating for the deficiency of endogenous gibberellin. Based on this, a semi-dwarf glutinous elite rice (Oryza sativa L.) Lines was developed without too much effect on most agronomic traits. Furthermore, a comparative transcriptome analysis unveiled that differentially expressed genes (DEGs) were primarily associated with the anchored component of the membrane, hydrogen peroxide catabolic process, peroxidase activity, terpene synthase activity, and apoplast. Additionally, terpene synthase genes involved in catalyzing the biosynthesis of diterpenoids to gibberellins were enriched and significantly down-regulated. This comprehensive study provides an efficient method for simultaneously enhancing rice plant height and quality, paving the way for the development of lodging-resistant and high-quality rice varieties.

Diverging cell wall strategies for drought adaptation in two maize inbreds with contrasting lodging resistance.

The plant cell wall is a plastic structure of variable composition that constitutes the first line of defence against environmental challenges. Lodging and drought are two stressful conditions that severely impact maize yield. In a previous work, we characterised the cell walls of two maize inbreds, EA2024 (susceptible) and B73 (resistant) to stalk lodging. Here, we show that drought induces distinct phenotypical, physiological, cell wall, and transcriptional changes in the two inbreds, with B73 exhibiting lower tolerance to this stress than EA2024. In control conditions, EA2024 stalks had higher levels of cellulose, uronic acids and p-coumarate than B73. However, upon drought EA2024 displayed increased levels of arabinose-enriched polymers, such as pectin-arabinans and arabinogalactan proteins, and a decreased lignin content. By contrast, B73 displayed a deeper rearrangement of cell walls upon drought, including modifications in lignin composition (increased S subunits and S/G ratio; decreased H subunits) and an increase of uronic acids. Drought induced more substantial changes in gene expression in B73 compared to EA2024, particularly in cell wall-related genes, that were modulated in an inbred-specific manner. Transcription factor enrichment assays unveiled inbred-specific regulatory networks coordinating cell wall genes expression. Altogether, these findings reveal that B73 and EA2024 inbreds, with opposite stalk-lodging phenotypes, undertake different cell wall modification strategies in response to drought. We propose that the specific cell wall composition conferring lodging resistance to B73, compromises its cell wall plasticity, and renders this inbred more susceptible to drought.

Generation of major glutelin-deficient (GluA, GluB, and GluC) semi-dwarf Koshihikari rice line.

We generated a new Koshihikari rice line with a drastically reduced content of glutelin proteins and higher lodging resistance by using new and conventional plant breeding techniques. Using CRISPR/Cas9-mediated genome editing, we generated mutant rice with drastically decreased contents of major glutelins. A Koshihikari rice mutant line, a123, lacking four glutelins (GluA1, GluA2, GluB4, and GluB5) was used as a host, and another five major glutelin genes (GluA3, GluB1a, GluB1b, GluB2, and GluC) were knocked out through two iterations of Agrobacterium-mediated transformation. Mutant seeds were deficient in the GluA family, GluB family, and GluC, and the line obtained was named GluABC KO. Glutelin content was much lower in GluABC KO than in the existing low-glutelin rice mutant LGC-1. A null segregant of GluABC KO was selected using new-generation sequencing and backcrossing, and the sd-1 allele for the semi-dwarf trait was introduced to increase lodging resistance.

Optimizing nitrogen management can improve stem lodging resistance and stabilize grain yield of japonica rice in rice-crayfish coculture systems

Nitrogen (N) is a major factor affecting rice yield and lodging resistance. Previous studies have primarily investigated the impact of N management on rice lodging in conventional rice monoculture (RM); however, few studies have performed such investigations in rice-crayfish coculture (RC). We hypothesized that RC would increase rice lodging risk and that optimizing N application practices would improve rice lodging resistance without affecting food security. We conducted a two-factor (rice farming mode and N management practice) field experiment from 2021 to 2022 to test our hypothesis. The rice farming modes included RM and RC, and the N management practices included no nitrogen fertilizer, conventional N application, and optimized N treatment. The rice yield and lodging resistance characteristics, such as the morphology, mechanical and chemical characteristics, anatomic structure, and gene expression levels, were analysed and compared among the different treatments. Under the same N application practice, RC decreased the rice yield by 11.1–24.4% and increased the lodging index by 19.6–45.6% compared with the values yielded in RM. In RC, optimized N application decreased the plant height, panicle neck node height, centre of gravity height, bending stress, and lodging index by 4.0–4.8%, 5.2–7.8%, 0.5–4.5%, 5.5–10.5%, and 1.8–19.5% compared with those in the conventional N application practice, respectively. Furthermore, it increased the culm diameter, culm wall thickness, breaking strength, and non-structural and structural carbohydrate content by 0.8–4.9%, 2.2–53.1%, 13.5–19.2%, 2.2–24.7%, and 31.3–87.2%, respectively. Optimized N application increased sclerenchymal and parenchymal tissue areas of the vascular bundle at the culm wall of the base second internode. Furthermore, optimized N application upregulated genes involved in lignin and cellulose synthesis, thereby promoting lower internodes on the rice stem and enhancing lodging resistance. Optimized N application in RC significantly reduced the lodging index by 1.8–19.5% and stabilized the rice yield (>8,570 kg ha–1 on average). This study systematically analysed and compared the differences in lodging characteristics between RM and RC, and these findings will aid in the development of more efficient practices for RC that will reduce N fertilizer application.

Identification and Gene Cloning of a Brittle Culm Mutant (bc22) in Rice

The mechanical strength of rice culm, an essential factor for lodging resistance and yield maintenance, is influenced by the composition and structure of the cell wall. In this study, we characterized a rice brittle culm mutant 22 (bc22), derived from LR005 through ethyl methanesulfonate (EMS) mutagenesis. The bc22 culm exhibited increased fragility and reduced mechanical strength compared to LR005. The mutant displayed pleiotropic effects, including a shorter plant height and panicle length, a smaller grain size, and the absence of the glume hairs. Scanning electron microscopy revealed a decrease in cell density and a looser structure in the bc22 culms. Biochemical analysis demonstrated a significant increase in hemicellulose content and a marked reduction in lignin content in the culm of bc22. Genetic analysis indicated that the brittle culm trait was governed by a single recessive gene. After employing bulked segregant analysis (BSA), whole-genome resequencing, and MutMap methods, LOC_Os02g25230 was identified as the candidate gene responsible for bc22. In bc22, a point mutation from proline (Pro) to leucine (Leu) in its coding region led to the pleiotropic phenotype. A complementation test further confirmed that the missense mutation causing the proline to leucine amino acid substitution in LOC_Os02g25230 was causative of the observed bc22 phenotype. Additionally, gene expression analysis showed that BC22 had higher expression levels in the culms, leaves, and spikelets compared to the roots. Taken together, our findings indicate that BC22 is a pleiotropic gene, and the influence of BC22 on brittleness may be associated with cell wall biosynthesis in rice culm.

Determination of the Allelic Composition of the sdw1/denso (HvGA20ox2), uzu1 (HvBRI1) and ari-e (HvDep1) Genes in Spring Barley Accessions from the VIR Collection

The lodging of barley significantly limits its potential yield, leads to the deterioration of grain quality, and complicates mechanized harvesting. More than 30 dwarfness and semi-dwarfness genes and loci are known for barley, and their involvement in breeding can solve the problem of lodging. The most common dwarfing alleles are of the genes sdw1/denso (HvGA20ox2), uzu1 (HvBRI1), and ari-e (HvDep1). The aim of this study was the design of dCAPS markers for the sdw1.c and ari-e.GP alleles and the molecular screening of barley accessions from the VIR collection for identifying these and other dwarfing alleles commonly used in breeding. Two dCAPS markers have been developed to identify the sdw1.c allele of the HvGA20ox2 gene and ari-e.GP of HvDep1. These dCAPS markers and two known from the literature CAPS and dCAPS markers of the alleles sdw1.a/sdw1.e, sdw1.c, sdw1.d, and uzu1.a were used in the molecular screening of 32 height-contrasting barley accessions. This made it possible to identify the accessions with alleles sdw1.a/sdw1.e, sdw1.c, and sdw1.d of the HvGA20ox2 gene, as well as accessions with a combination of sdw1.c and uzu1.a alleles of the genes HvGA20ox2 and HvBRI1. A comparison of the results of genotyping and phenotyping showed that the presence of dwarfing alleles in all genotypes determines high or medium lodging resistance regardless of the influence of weather conditions. Twelve accessions were found to contain the new allele sdw1.ins of the HvGA20ox2 gene, which differs from the known allele sdw1.c by a larger size of PCR products. It is characterized by the Thalos_2 transposon insertion; the subsequent GTTA insertion, common with the sdw1.c allele; and by a single-nucleotide G→A substitution at the 165 position.

Genetic Analysis of Adaptive Traits in Spring Wheat in Northeast China.

The dissection of the genetic architecture and the detection of the loci for adaptive traits are important for marker-assisted selection (MAS) for breeding. A spring wheat diversity panel with 251 cultivars, mainly from China, was obtained to conduct a genome-wide association study (GWAS) to detect the new loci, including the heading date (HD), maturating date (MD), plant height (PH), and lodging resistance (LR). In total, 41 loci existing in all 21 chromosomes, except for 4A and 6B, were identified, and each explained 4.3-18.9% of the phenotypic variations existing in two or more environments. Of these, 13 loci are overlapped with the known genes or quantitative trait loci (QTLs), whereas the other 28 are likely to be novel. The 1A locus (296.9-297.7 Mb) is a multi-effect locus for LR and PH, whereas the locus on chromosome 6D (464.5-471.0 Mb) affects both the HD and MD. Furthermore, four candidate genes for adaptive traits were identified, involved in cell division, signal transduction, and plant development. Additionally, two competitive, allele-specific PCR (KASP) markers, Kasp_2D_PH for PH and Kasp_6D_HD for HD, were developed and validated in another 162 spring wheat accessions. Our study uncovered the genetic basis of adaptive traits and provided the associated SNPs and varieties with more favorable alleles for wheat MAS breeding.

Genome-wide association studies for a comprehensive understanding of the genetic architecture of culm strength and yield traits in rice.

Lodging resistance in rice is a complex trait determined by culm morphological and culm physical strength traits, and these traits are a major determinant of yield. We made a detailed analysis of various component traits with the aim of deriving optimized parameters for measuring culm strength. Genotyping by sequencing (GBS)-based genome-wide association study (GWAS) was employed among 181 genotypes for dissecting the genetic control of culm strength traits. The VanRaden kinship algorithm using 6,822 filtered single-nucleotide polymorphisms (SNPs) revealed the presence of two sub-groups within the association panel with kinship values concentrated at<0.5 level, indicating greater diversity among the genotypes. A wide range of phenotypic variation and high heritability for culm strength and yield traits were observed over two seasons, as reflected in best linear unbiased prediction (BLUP) estimates. The multi-locus model for GWAS resulted in the identification of 15 highly significant associations (p< 0.0001) for culm strength traits. Two novel major effect marker-trait associations (MTAs) for section modulus and bending stress were identified on chromosomes 2 and 12 with a phenotypic variance of 21.87% and 10.14%, respectively. Other MTAs were also noted in the vicinity of previously reported putative candidate genes for lodging resistance, providing an opportunity for further research on the biochemical basis of culm strength. The quantitative trait locus (QTL) hotspot identified on chromosome 12 with the synergistic association for culm strength trait (section modulus, bending stress, and internode breaking weight) and grain number can be considered a novel genomic region that can serve a dual purpose of enhancing culm strength and grain yield. Elite donors in the indica background with beneficial alleles of the identified major QTLs could be a valuable resource with greater significance in practical plant breeding programs focusing on improving lodging resistance in rice.

A comprehensive review on mutation breeding milestones in cereals: Conventional to advanced molecular approaches to achieve sustainable goals in trait improvement

The grass family includes the annual common grasses known as cereals. The 5 main types of cereals are rice, wheat, barley, rye and oats. As a result of their high vitamin (20-80%) and fiber content (90%), these grains can help treat conditions like type II diabetes, complex metabolic syndrome, obesity, gastrointestinal disorders, and high cholesterol. Cereals have inspired a long history of research into their genetics, development, and evolution due to their significance in both economic and scientific terms. They need to be improved because they play a big part in global food production and crop quality is declining. The crop improvement can be done by incorporating desired features from non-adapted landraces/wild resources. That induced mutagenesis has made a significant contribution to crop improvement initiatives by producing mutant varieties with better and desired genetic modifications in the crop plants mainly in agronomically significant features. The mutants produced by the induction of physical and chemical mutagens were highly useful. The notable traits obtained by the induced mutations are semidwarfness and early maturity in rice varieties, disease resistance in barley, salinity, and drought tolerance in wheat, and lodging and disease resistance in oat and rye. In this review, we focused on identifying and developing elite mutants, their genetic function, and their utilization in future breeding programs for various traits in cereal crops.