The Shunyi (SY) earth fissures originated due to groundwater pumping and have caused severe damage to the Beijing Capital International Airport (BCIA) and other infrastructure in Beijing, China. They are distributed along the pre-existing NE-SW trending normal Shunyi-Liangxiang (SL) fault zone, with 1–30 cm vertical offsets. Previous studies of this long-term ground displacement have concluded that a subsidence bowl has formed on the footwall (northwestern side) of the SL fault in the BCIA. However, based on our observations, the relative subsidence occurred exclusively on the southeastern side, behaving like the activation of the SL fault. This complex deformation pattern has led to the formation mechanism of the SY earth fissures remaining unclear. In this study, two groups of numerical simulations based on the geological and hydrogeological settings of the SY earth fissures were performed. In Scenario I, the pumping load was on the footwall, whereas in Scenario II, the pumping load was on the hanging wall. Our results show that there are always two areas in the faulted model that have undergone pumping-induced subsidence. The first subsidence area indicates that the actual regional subsidence bowl occurred extensively around the pumping well. This subsidence was blocked by the pre-existing normal fault zone. The second subsidence area is localized and occurred abruptly in the hanging wall adjacent to the fault zone regardless of the effect of the position of the pumping load. This localized differential subsidence, representing the secondary surface faulting, was accompanied by earth fissure formation due to concentration of the surface shear strain. These simulation results agree with the actual land deformation across the SY earth fissures. Furthermore, our results suggest that both the formation location and deformation pattern of the SY earth fissures were dependent upon the characteristics of the pre-existing SL fault zone. This is mainly attributed to the fact that the fault zone has a lower resistance than the surrounding materials. Our findings reveal the formation mechanism of the SY earth fissures and provide a new understanding of pumping-induced earth fissures in other faulted areas.