The mountainous region of central Shandong Province in eastern China is renowned for its high frequency of rainstorms, which often result in devastating flood disasters and have profoundly affected the evolution of local ancient civilizations. To identify ancient flood disaster events, recognizing sediment signatures via multiple indices is important. Here, we investigated the 2018 flood deposits in the Danhe River Basin and sampled short core DH2, on which the grain size, total organic matter (TOM) content, carbonate content, magnetic susceptibility (MS) and pollen were measured. The fine grain size of the flood sedimentary layer reveals that the flood energy in the alluvial plain area is usually weak. The pollen species and concentration and the tree pollen content in the flood layer are significantly greater than those in the soil layer, suggesting that the flood sediment mainly originates from the mountainous areas in the upper reaches of the river, which provides more forest vegetation information. The MS of flood deposits is lower than that of the soil layer, which is mainly related to the intensity of pedogenesis. The research results indicate that the flood sediments in the downstream floodplain areas of small watersheds are predominantly composed of fine-grained components, with characteristics of high loss on ignition, low magnetic susceptibility, high pollen abundance and diverse species. These findings establish a multi-index identification system for paleoflood sedimentation, which has important reference significance for the study of paleoflood sedimentology and hydrology.