To document the aquatic flora of acid lakes in Kejimkujik National Park, N.S., the presence and abundance of aquatic macrophytes growing in water deeper than 3 dm were recorded in 20 lakes. Of the 45 species found, the most important were Sphagnum macrophyllum, Eriocaulon septangulare, Utricularia purpurea, Scirpus subterminalis, Pontederia cordata, Nuphar variegatum, Nymphaea odorata, Eleocharis acicularis, Sparganium angustifolium, Potamogeton confervoides, Lobelia dortmanna, Potamogeton epihydrus, and Utricularia vulgaris. To explore the relationship between floristic composition and water chemistry, information on 12 chemical variables and colour was related to species presence–absence using a nonparametric test based on relative neighbourhood graphs. Analyses of variance (ANOVAs) using chemical data and six groups suggested by a conditional clustering of the species presence–absence data demonstrated significant heterogeneity in Ca, pH, and HCO3. Furthermore, these three proved to be highly correlated. A canonical variate analysis of the six groups revealed one significant axis and separated the lakes into two major groups, characterized by relative acidity. An ANOVA of these two groups established that colour was also significant. There were fewer species in the more acidic (range 8–20, average 15) than in the less acidic lakes (range 15–32, average 22).